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branch: rosetta:commits 「№20559」
Commited by: Sergey Lyskov
GitHub commit link: 「bc5ac7a8a81e39b0」
Difference from previous tested commit:  code diff
Commit date: 2024-10-11 04:48:52
code_quality.beautify

trigger clean rebuild

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branch: rosetta:commits 「№20558」
Commited by: Jack Maguire
GitHub Pull Request link: 「№197」
Merge: 「052e816d2」← 「c69d7f678」  code diff
Scheduled at: 2024-10-11 07:50:33.651961
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №197 RosettaCommons/rosetta/main ← JackMaguire/rosetta_not_sele_pr/patch_message Merge: 052e816d22dacac6b21b887def5d75be75156ab8←c69d7f6787ba0679ca5faa05f8d6e432c62f5ff7 Negative unit test for bad patches ---------------- Merge commit message: TS_ASSERT_THROWS_ANYTHING

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branch: rosetta:commits 「№20557」
Commited by: Jack Maguire
GitHub Pull Request link: 「№197」
Merge: 「052e816d2」← 「cb021a988」  code diff
Scheduled at: 2024-10-10 09:51:45.008341
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug beautification code_quality.beautify gcc-9.gcc.unit m1.clang.python39.unit windows.build.debug

Pull Request №197 RosettaCommons/rosetta/main ← JackMaguire/rosetta_not_sele_pr/patch_message Merge: 052e816d22dacac6b21b887def5d75be75156ab8←cb021a9889835d9ffedd1969deaf16c1cf1ef314 Negative unit test for bad patches ---------------- Merge commit message: typo fix

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branch: rosetta:commits 「№20556」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№187」
Merge: 「052e816d2」← 「7beceb352」  code diff
Scheduled at: 2024-10-10 00:33:12.292400
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python38.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №187 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: 052e816d22dacac6b21b887def5d75be75156ab8←7beceb352a3763c948815c2c663a4a1e879a7c31 PyRosetta, preliminary PR to add Python-3.13 support ---------------- Merge commit message: update Python-3.13 source URL

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branch: rosetta:commits 「№20555」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№187」
Merge: 「052e816d2」← 「a15288b8b」  code diff
Scheduled at: 2024-10-09 19:57:20.012107
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №187 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: 052e816d22dacac6b21b887def5d75be75156ab8←a15288b8ba680e8dc78baae3ce46a993ad6f9e43 PyRosetta, preliminary PR to add Python-3.13 support ---------------- Merge commit message: Merge branch 'main' into pyrosetta

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branch: rosetta:commits 「№20554」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「1f60bfa2b」  code diff
Scheduled at: 2024-10-09 17:24:01.762178
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python38.PyRosetta.unit mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.clang.python312.scripts.pyrosetta linux.clang.python39.scripts.pyrosetta ubuntu.clang.python312.scripts.pyrosetta linux.clang.scripts.rosetta.parse ubuntu.clang.scripts.rosetta.parse linux.clang.scripts.rosetta.validate ubuntu.clang.scripts.rosetta.validate linux.clang.scripts.rosetta.verify ubuntu.clang.scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←1f60bfa2b1501dc64e0c14db749a76a94ea87d87 Updated Ligand Motifs Code ---------------- Merge commit message: fixed call to wrong variable

Rosetta Benchmark 6 months
Tests for this revision was automatically canceled because newer set of tests for pull-request №59 was submitted!
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branch: rosetta:commits 「№20553」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「84ea0bcc0」  code diff
Scheduled at: 2024-10-07 18:05:47.550414
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←84ea0bcc0efe29ece41db0eb0760427420fd7619 Updated Ligand Motifs Code ---------------- Merge commit message: a little cleanup as well as submiting initial build of determine_real_motifs app, which utilizes the IdentifyLigandMotifs evaluate_motifs_of_pose function on an inputted pose and creates a new pose with comments based on the motifs collected off the pdb

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Test: linux.gcc.code_quality.beautification

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Test: ubuntu.gcc.code_quality.cppcheck

Failed sub-tests (click for more details):
protocols/motifs/IdentifyLigandMotifs.cc
Test: ubuntu.gcc.code_quality.merge_size

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branch: rosetta:commits 「№20552」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「07f4ce7eb」  code diff
Scheduled at: 2024-10-04 14:14:40.821394
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←07f4ce7eb442454a7e0c5da207a1222bb6673de2 Updated Ligand Motifs Code ---------------- Merge commit message: adding additinoal tracing to resolve an issue

Rosetta Benchmark 6 months
Tests for this revision was automatically canceled because newer set of tests for pull-request №59 was submitted!
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Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
include_cc_check ligand_motif_discovery
Test: linux.clang.score

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Test: linux.gcc.score

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Test: mac.clang.score

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branch: rosetta:commits 「№20551」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「e805eb7bd」  code diff
Scheduled at: 2024-10-04 12:38:35.018630
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification ubuntu.clang.code_quality.cppcheck ubuntu.gcc.code_quality.cppcheck code_quality.merge_size serialization linux.clang.code_quality.submodule_regression linux.gcc.code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←e805eb7bd2c890a788dfaa4e324a0535d87309cb Updated Ligand Motifs Code ---------------- Merge commit message: fixing location of funal return statement to be in correct location

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Test: ubuntu.gcc.code_quality.merge_size

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Test: linux.clang.performance

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Test: linux.clang.profile

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Test: linux.clang.score

Failed sub-tests (click for more details):
Test: linux.gcc.score

Failed sub-tests (click for more details):


branch: rosetta:commits 「№20550」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「1936c5cbc」  code diff
Scheduled at: 2024-10-04 12:33:05.916581
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug static beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←1936c5cbc4bfa9afdf518b31106010b558cffff0 Updated Ligand Motifs Code ---------------- Merge commit message: fixing old variable conventions. Also making mymap pass into evaluate_motifs_of_pose as not const, because you can't use the [] operator on a const map

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branch: rosetta:commits 「№20549」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「96c1434e1」  code diff
Scheduled at: 2024-10-04 12:19:57.734969
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug static beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←96c1434e15e8ea10ccbbc660cf86c661ab303b57 Updated Ligand Motifs Code ---------------- Merge commit message: adding extra_pose_info_util to ILM.cc so that it can utilize add_comment. Also fixing bad variable naming where I accentally called the function instead of vector

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branch: rosetta:commits 「№20548」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「ba0bf0ae0」  code diff
Scheduled at: 2024-10-04 12:12:44.473601
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←ba0bf0ae0bd393f638812ad68fdf15f714ef8ea3 Updated Ligand Motifs Code ---------------- Merge commit message: missing semicolon missing semicolon#

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branch: rosetta:commits 「№20547」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「7ae51212d」  code diff
Scheduled at: 2024-10-04 12:08:39.697721
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←7ae51212d4c96a768c7274e2ddbed0741e32b84a Updated Ligand Motifs Code ---------------- Merge commit message: incliding motif_utils.hh to the ILM.hh file since it uses the motif_atoms type_def

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branch: rosetta:commits 「№20546」
Commited by: Ginsparg
GitHub Pull Request link: 「№59」
Merge: 「ec708a4c4」← 「6a070a6c5」  code diff
Scheduled at: 2024-10-04 12:01:51.460447
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
build.ninja_debug graphics static windows.build.debug windows.build.release

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: ec708a4c40449ea419c8fcac0d507440400bf75f←6a070a6c5e5549e7daf02a2a5bb11b99165a2cbb Updated Ligand Motifs Code ---------------- Merge commit message: substantial update that moves the placed ligand motif collection code into a public function in a identify ligand motifs object

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branch: rosetta:commits 「№20545」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№187」
Merge: 「ba06f1143」← 「0afbe4394」  code diff
Scheduled at: 2024-10-04 11:00:49.974123
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python310.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №187 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: ba06f11430f370c2f265737635ed98d9f0323f27←0afbe43946cc862ba58b83cb1e31b2bf649c0e45 PyRosetta, preliminary PR to add Python-3.13 support ---------------- Merge commit message: trigger clean build

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branch: rosetta:commits 「№20544」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№187」
Merge: 「ba06f1143」← 「e3ea63558」  code diff
Scheduled at: 2024-10-03 22:48:36.076011
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №187 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: ba06f11430f370c2f265737635ed98d9f0323f27←e3ea635588807bb40051d9cfea57d7460f2812b6 PyRosetta, preliminary PR to add Python-3.13 support ---------------- Merge commit message: update Pybind11 to v2.13

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