branch: RFdiffusion:commits 「№27」
Commited by: AlexTaguchi
GitHub Pull Request link: 「№249」
Merge: 「820bfdfad」「30ae39e38」  code diff
Scheduled at: 2024-06-18 17:45:22.271407
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Pull Request №249 RosettaCommons/RFdiffusion/main ← AlexTaguchi/RFdiffusion/bugfix/docker Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←30ae39e38e8196564e54674bffc688640ed4e75e Fixed Dockerfile numpy version bug ---------------- Merge commit message: Fixed Dockerfile numpy version bug

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№26」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「f9baffe58」  code diff
Scheduled at: 2024-06-03 21:35:54.219725
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Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←f9baffe58a588402d59a21c2144432536cc93a5d Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Simplify installation

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№25」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「51e45c20b」  code diff
Scheduled at: 2024-06-03 17:48:52.216515
rfd

Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←51e45c20b744d74e6d17a28fe77cbe291ca5f832 Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Fix invalid device name

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№24」
Commited by: lin onetwo
GitHub Pull Request link: 「№236」
Merge: 「820bfdfad」「86b233a24」  code diff
Scheduled at: 2024-05-08 12:01:34.952943
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Pull Request №236 RosettaCommons/RFdiffusion/main ← linonetwo/RFdiffusion/patch-1 Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←86b233a24b7981af5ef9e23df3f213557e928513 fix: Add `.long()` to seq_orig ---------------- Merge commit message: fix: Add `.long()` to seq_orig

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№23」
Commited by: lin onetwo
GitHub Pull Request link: 「№237」
Merge: 「820bfdfad」「25a29780c」  code diff
Scheduled at: 2024-05-08 12:01:34.066040
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Pull Request №237 RosettaCommons/RFdiffusion/main ← linonetwo/RFdiffusion/patch-2 Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←25a29780c50f53143f7d0090bcd8f75f76f4f164 docs: about a python command pitfall ---------------- Merge commit message: docs: about python command pitfull Based on https://github.com/RosettaCommons/RFdiffusion/discussions/226#discussioncomment-9167738

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№22」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№233」
Merge: 「820bfdfad」「25d250b0d」  code diff
Scheduled at: 2024-04-26 17:07:00.945420
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Pull Request №233 RosettaCommons/RFdiffusion/main ← roccomoretti/RFdiffusion/roccomoretti-contig_sample_detail Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←25d250b0d09e709f6106d387dd12e3d9086181df Add information about sampled contig ---------------- Merge commit message: Add information about sampled contig In addition to the general contig specification which is being used for the generation, it would also be helpful to monitor what the actual randomly sampled contig is. I believe this change does that: ``` [2024-04-26 13:29:13,350][rfdiffusion.inference.model_runners][INFO] - Using contig: ['10-100/A1083-1083/10-100/A1051-1051/10-100/A1180-1180/10-100'] [2024-04-26 13:29:13,351][rfdiffusion.inference.model_runners][INFO] - Sampled contig: ['53-53/A1083-1083/100-100/A1051-1051/86-86/A1180-1180/22-22'] ```

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№21」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「8bd29e83d」  code diff
Scheduled at: 2024-04-25 00:14:57.187677
rfd

Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←8bd29e83ddde4a668d2fc6299b6595e38ec00d1b Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Add ability to control seed value in deterministic runs

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№20」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「bb0131247」  code diff
Scheduled at: 2024-04-22 17:19:56.302632
rfd

Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←bb01312473611c9cab00158f545c559db89ad988 Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Add config schema type hints

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№19」
Commited by: patriksimurka
GitHub Pull Request link: 「№168」
Merge: 「820bfdfad」「98dc1539a」  code diff
Scheduled at: 2023-12-07 14:03:59.314090
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Pull Request №168 RosettaCommons/RFdiffusion/main ← patriksimurka/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←98dc1539a67b5c9552bd8d42986e160aa5cf031d Fix symmetric oligomer example bug in readme ---------------- Merge commit message: Fix symmetric oligomer example bug in readme

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branch: RFdiffusion:commits 「№18」
Commited by: Fatboy
GitHub Pull Request link: 「№156」
Merge: 「820bfdfad」「8fa27c861」  code diff
Scheduled at: 2023-11-15 09:27:21.641948
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Pull Request №156 main←patch-1 Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←8fa27c861c5a7cbf8740cc911c9ff71316a9e151 Update SE3nv.yml ---------------- Merge commit message: Update SE3nv.yml Pytorch-gpu is needed instead of pytorch. It will pull the dependencies on its own.

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branch: RFdiffusion:commits 「№17」
Commited by: Joseph Watson/Watchwell
GitHub Pull Request link: 「№136」
Merge: 「46c0ef680」「22584a2a7」  code diff
Scheduled at: 2023-10-03 17:26:48.715064
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Pull Request №136 main←joewatchwell-patch-1 Merge: 46c0ef6803df475b10ebe0a9b5cf490002fda7b0←22584a2a7d64e919883f674037b886e269737d7f Update LICENSE ---------------- Merge commit message: Update LICENSE

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branch: RFdiffusion:commits 「№16」
Commited by: Joseph Watson
GitHub Pull Request link: 「№126」
Merge: 「46c0ef680」「c68e28db2」  code diff
Scheduled at: 2023-09-13 20:17:55.801136
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Pull Request №126 main←JW_PR2 Merge: 46c0ef6803df475b10ebe0a9b5cf490002fda7b0←c68e28db2278627ac0d5886e2337e9f6f801bb9d Updated README ---------------- Merge commit message: Updated README

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branch: RFdiffusion:commits 「№15」
Commited by: Joseph Watson
GitHub Pull Request link: 「№125」
Merge: 「ba8446eae」「7bdc90c9b」  code diff
Scheduled at: 2023-09-13 19:32:06.917082
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Pull Request №125 main←JW_PR2 Merge: ba8446eae0fb80c121829a67d3464772cc827f01←7bdc90c9b7b3a251119bfac8a632d7d219022701 Implemented inpaint_str and added example ---------------- Merge commit message: Implemented inpaint_str and added example

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branch: RFdiffusion:commits 「№14」
Commited by: Javier Castellanos
GitHub Pull Request link: 「№117」
Merge: 「ba8446eae」「c5877f3ff」  code diff
Scheduled at: 2023-09-01 02:02:41.347148
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Pull Request №117 main←dockerfile-conda Merge: ba8446eae0fb80c121829a67d3464772cc827f01←c5877f3ffb1d34476c423e4da666326d19186e90 Update Dockerfile to use conda ---------------- Merge commit message: added linker path for singularity

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branch: RFdiffusion:commits 「№13」
Commited by: Javier Castellanos
GitHub Pull Request link: 「№117」
Merge: 「ba8446eae」「013de05eb」  code diff
Scheduled at: 2023-08-31 18:15:20.559108
rfd

Pull Request №117 main←dockerfile-conda Merge: ba8446eae0fb80c121829a67d3464772cc827f01←013de05eb76554cfd8e9391fb762e435da3de106 Update Dockerfile to use conda ---------------- Merge commit message: Update Dockerfile to use conda

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branch: RFdiffusion:commits 「№12」
Commited by: Joseph Watson
GitHub Pull Request link: 「№96」
Merge: 「9149e5395」「c9ba72d90」  code diff
Scheduled at: 2023-07-25 13:36:42.479140
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Pull Request №96 main←JW_PR Merge: 9149e5395a33e8b365782b34a91c09e0f29e8117←c9ba72d90fb5614d81ed122429563927aa9af932 Added p53 scaffolding example ---------------- Merge commit message: Added input pdb for p53 case

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