Pull Request №386 RosettaCommons/RFdiffusion/main ← OrangeCatzhang/RFdiffusion/fix_scaffoldguided_design
Merge: fa340147b9006156b251d1ad0391e3ea8e5f73eb←7c30fee0abf502e30b3e32c4b7a6e47c20ad74d8
Fixed issues with designing in scaffoldguided mode
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Merge commit message:
Fixed issues with designing in scaffoldguided mode, for example: design_ppi_scaffold.sh. The solutions to issues 272 and 273 did not fully address the issue.
Pull Request №381 RosettaCommons/RFdiffusion/main ← RosettaCommons/RFdiffusion/fix_rfpeptides_ci
Merge: fa340147b9006156b251d1ad0391e3ea8e5f73eb←637a6b7379fbb29e223a794802927897c90094f9
Fix broken CI from rfpeptides examples
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Merge commit message:
add python in front of macrocycle example execution
Pull Request №348 RosettaCommons/RFdiffusion/main ← BYachnin/RFdiffusion/BYachnin/main_chain_and_res_numbering
Merge: b44206a2a79f219bb1a649ea50603a284c225050←d32205a17f244757fcbe94f4658329ef9cb0459c
Retain chain and residue numbering in RFdiffusion
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Merge commit message:
Extend available new chains to include lowercase letters
Also print a warning if the user exceeds 52 chains (using up all upper-
and lower-case chain ids).
Pull Request №346 RosettaCommons/RFdiffusion/main ← BYachnin/RFdiffusion/BYachnin/enable_symmetry
Merge: b44206a2a79f219bb1a649ea50603a284c225050←63e270f715104896a5684108f582046b1d551b1e
Retain chain and residue numbering in RFdiffusion
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Merge commit message:
For fixed chains, retain residue numbering
For chains that are completely fixed, retain the residue numbering from
the input rather than renumbering. For chains that are partially or
fully designed by RFdiffusion, it isn't clear to me what the 'correct'
behaviour should be, so these chains will be re-numbered starting at
residue 1.
Pull Request №309 RosettaCommons/RFdiffusion/main ← arikat/RFdiffusion/main
Merge: b44206a2a79f219bb1a649ea50603a284c225050←681693c346036cd1a5da61eb211c7898bd8bb13c
Update Dockerfile to include numpy1.24.3
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Merge commit message:
dummy commit to trigger test run
Pull Request №309 RosettaCommons/RFdiffusion/main ← arikat/RFdiffusion/main
Merge: b44206a2a79f219bb1a649ea50603a284c225050←bdcd913c897ad5fccadbd967676f093206d0043a
Update Dockerfile to include numpy1.24.3
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Merge commit message:
Update Dockerfile to include numpy1.24.3
Numpy2 does not work w/ current RFDiffusion, but the dockerfile automatically installs numpy2 (breaking RFDiffusion when running via docker). This just hardcodes numpy==1.24.3 to allow RFDiffusion to continue working properly.