branch: RFdiffusion:commits 「№35」
Commited by: Brian Loyal
GitHub Pull Request link: 「№286」
Merge: 「b44206a2a」「142930960」  code diff
Scheduled at: 2024-10-21 15:44:17.430288
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Pull Request №286 RosettaCommons/RFdiffusion/main ← brianloyal/RFdiffusion/main Merge: b44206a2a79f219bb1a649ea50603a284c225050←142930960dd5905403b0d6fd90696fe40650a128 Update model_runners.py ---------------- Merge commit message: Update model_runners.py Fixes https://github.com/RosettaCommons/RFdiffusion/issues/273

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№34」
Commited by: David Prihoda
GitHub Pull Request link: 「№278」
Merge: 「b44206a2a」「94c952534」  code diff
Scheduled at: 2024-10-15 08:32:51.375378
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Pull Request №278 RosettaCommons/RFdiffusion/main ← prihoda/RFdiffusion-fork/prihoda-patch1 Merge: b44206a2a79f219bb1a649ea50603a284c225050←94c952534d41743ad6e6ce47e22a4abb07ce1d68 Enable running with T < 15 ---------------- Merge commit message: Enable running with T < 15

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№33」
Commited by: David Prihoda
GitHub Pull Request link: 「№278」
Merge: 「b44206a2a」「b866ad44d」  code diff
Scheduled at: 2024-09-06 11:25:57.253909
rfd

Pull Request №278 RosettaCommons/RFdiffusion/main ← prihoda/RFdiffusion-fork/prihoda-patch1 Merge: b44206a2a79f219bb1a649ea50603a284c225050←b866ad44d0f524f7246ca226d9cd77a87334334c Enable running with T < 15 ---------------- Merge commit message: Enable running with T < 15

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№32」
Commited by: David Prihoda
GitHub Pull Request link: 「№277」
Merge: 「b44206a2a」「a7a04730e」  code diff
Scheduled at: 2024-09-06 11:15:02.914512
rfd

Pull Request №277 RosettaCommons/RFdiffusion/main ← prihoda/RFdiffusion-fork/main Merge: b44206a2a79f219bb1a649ea50603a284c225050←a7a04730e8037b2c954825b6d0d484ddac861209 Fix Torch CPU support in SE3Transformer ---------------- Merge commit message: Fix Torch CPU support in SE3Transformer

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№31」
Commited by: Joseph Watson
GitHub Pull Request link: 「№269」
Merge: 「820bfdfad」「521a488d0」  code diff
Scheduled at: 2024-08-25 10:10:10.568090
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Pull Request №269 RosettaCommons/RFdiffusion/main ← RosettaCommons/RFdiffusion/liuetal Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←521a488d0c0a39b9f08da4d2a1486ff0700a23ff Merge in code for Caixuan's paper ---------------- Merge commit message: correct example

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№30」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「abc3b005d」  code diff
Scheduled at: 2024-07-11 16:07:33.133923
rfd

Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←abc3b005dc82ed0925807e83861e8cd611b57c64 Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Use prefix_05d format

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№29」
Commited by: Eric DEVEAUD
GitHub Pull Request link: 「№253」
Merge: 「820bfdfad」「d3496a85f」  code diff
Scheduled at: 2024-06-21 11:02:21.255695
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Pull Request №253 RosettaCommons/RFdiffusion/main ← EricDeveaud/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←d3496a85ffa4d2c421ac382b84d969d522c23cf0 use user HOME dir for cache, config, models ---------------- Merge commit message: hydra config searched under HOME/rfdissusion/config/inference hydra config location may be overwitten by RFD_HYDRA_CFG env var

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№28」
Commited by: Adrian Lange
GitHub Pull Request link: 「№250」
Merge: 「820bfdfad」「f001bddbb」  code diff
Scheduled at: 2024-06-20 18:33:10.289285
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Pull Request №250 RosettaCommons/RFdiffusion/main ← awlange/RFdiffusion/awlange/bug/centroid Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←f001bddbb95be41ce782cf4924ef0e730606c837 Bug fix: centroid_m2 ---------------- Merge commit message: bug fix: centroid_m2

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№27」
Commited by: AlexTaguchi
GitHub Pull Request link: 「№249」
Merge: 「820bfdfad」「30ae39e38」  code diff
Scheduled at: 2024-06-18 17:45:22.271407
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Pull Request №249 RosettaCommons/RFdiffusion/main ← AlexTaguchi/RFdiffusion/bugfix/docker Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←30ae39e38e8196564e54674bffc688640ed4e75e Fixed Dockerfile numpy version bug ---------------- Merge commit message: Fixed Dockerfile numpy version bug

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№26」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「f9baffe58」  code diff
Scheduled at: 2024-06-03 21:35:54.219725
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Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←f9baffe58a588402d59a21c2144432536cc93a5d Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Simplify installation

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№25」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「51e45c20b」  code diff
Scheduled at: 2024-06-03 17:48:52.216515
rfd

Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←51e45c20b744d74e6d17a28fe77cbe291ca5f832 Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Fix invalid device name

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№24」
Commited by: lin onetwo
GitHub Pull Request link: 「№236」
Merge: 「820bfdfad」「86b233a24」  code diff
Scheduled at: 2024-05-08 12:01:34.952943
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Pull Request №236 RosettaCommons/RFdiffusion/main ← linonetwo/RFdiffusion/patch-1 Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←86b233a24b7981af5ef9e23df3f213557e928513 fix: Add `.long()` to seq_orig ---------------- Merge commit message: fix: Add `.long()` to seq_orig

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№23」
Commited by: lin onetwo
GitHub Pull Request link: 「№237」
Merge: 「820bfdfad」「25a29780c」  code diff
Scheduled at: 2024-05-08 12:01:34.066040
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Pull Request №237 RosettaCommons/RFdiffusion/main ← linonetwo/RFdiffusion/patch-2 Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←25a29780c50f53143f7d0090bcd8f75f76f4f164 docs: about a python command pitfall ---------------- Merge commit message: docs: about python command pitfull Based on https://github.com/RosettaCommons/RFdiffusion/discussions/226#discussioncomment-9167738

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№22」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№233」
Merge: 「820bfdfad」「25d250b0d」  code diff
Scheduled at: 2024-04-26 17:07:00.945420
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Pull Request №233 RosettaCommons/RFdiffusion/main ← roccomoretti/RFdiffusion/roccomoretti-contig_sample_detail Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←25d250b0d09e709f6106d387dd12e3d9086181df Add information about sampled contig ---------------- Merge commit message: Add information about sampled contig In addition to the general contig specification which is being used for the generation, it would also be helpful to monitor what the actual randomly sampled contig is. I believe this change does that: ``` [2024-04-26 13:29:13,350][rfdiffusion.inference.model_runners][INFO] - Using contig: ['10-100/A1083-1083/10-100/A1051-1051/10-100/A1180-1180/10-100'] [2024-04-26 13:29:13,351][rfdiffusion.inference.model_runners][INFO] - Sampled contig: ['53-53/A1083-1083/100-100/A1051-1051/86-86/A1180-1180/22-22'] ```

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№21」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「8bd29e83d」  code diff
Scheduled at: 2024-04-25 00:14:57.187677
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Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←8bd29e83ddde4a668d2fc6299b6595e38ec00d1b Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Add ability to control seed value in deterministic runs

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Test: ubuntu-20.04.clang.python39.rfd

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branch: RFdiffusion:commits 「№20」
Commited by: Junior Martins
GitHub Pull Request link: 「№229」
Merge: 「820bfdfad」「bb0131247」  code diff
Scheduled at: 2024-04-22 17:19:56.302632
rfd

Pull Request №229 RosettaCommons/RFdiffusion/main ← jrom99/RFdiffusion/main Merge: 820bfdfaded8c260b962dc40a3171eae316b6ce0←bb01312473611c9cab00158f545c559db89ad988 Allow manually setting device name (CUDA/CPU) ---------------- Merge commit message: Add config schema type hints

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Test: ubuntu-20.04.clang.python39.rfd

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