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branch: rosetta:commits 「№21131」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№636」
Merge: 「c6e41681b」← 「91605dd8d」 code diff
Scheduled at: 2026-03-30 02:00:52.162378

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←91605dd8d2c9e00324cf235708f02e0f239f74d6 Split T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Clean up unit test subprocesses

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit

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Test: ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit

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branch: rosetta:commits 「№21130」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№636」
Merge: 「c6e41681b」← 「7c23878e9」 code diff
Scheduled at: 2026-03-29 17:35:10.213546

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←7c23878e947a54dd2dea08025b6873d3e50977bf Test splitting T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Testing scorefunction transition through intermediate PDB format serialization

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit

Failed sub-tests (click for more details):
T920_PyRosettaCluster_TestReproducibilityRemodelTaskUpdates

Test: ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit

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Test: ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python314.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit

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branch: rosetta:commits 「№21129」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№638」
Merge: 「a8f70994f」← 「141b4a5f4」 code diff
Scheduled at: 2026-03-28 17:45:15.379694

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←141b4a5f4f3f6231792459804c533d459182b29c Generate type stubs when building packages ---------------- Merge commit message: Disable type-stubs generation on Conda Python-3.8 platform

Summary
ubuntu.clang.cxx11thread.serialization.python38.release.PyRosetta.Release

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Test: ubuntu.clang.cxx11thread.serialization.python38.release.PyRosetta.Release

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branch: rosetta:commits 「№21128」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№639」
Merge: 「c6e41681b」← 「392d8579f」 code diff
Scheduled at: 2026-03-28 16:49:29.716746

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←392d8579f4be9242d23d95c9a21d60656ec7b821 Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: Revert "Revert "New Pose per subprocess"" This reverts commit 389bfd45dac71197a4f12a65d34968c18869dff9.

Summary

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branch: rosetta:commits 「№21127」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№639」
Merge: 「c6e41681b」← 「ae1af6328」 code diff
Scheduled at: 2026-03-28 16:41:05.069125

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←ae1af63286476bea5f2a9a0b714aba20accff3b4 Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: Set scorefunctions in protocols

Summary

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branch: rosetta:commits 「№21126」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№637」
Merge: 「c6e41681b」← 「9ab83b632」 code diff
Scheduled at: 2026-03-28 16:08:28.678884

Pull Request №637 RosettaCommons/rosetta/main ← klimaj/rosetta/stress_test Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←9ab83b632292c751d5e81b7a11e0174e0d4e6ed3 Stress test subprocess concurrency on Benchmark server ---------------- Merge commit message: Merge branch 'main' of github.com:klimaj/rosetta into stress_test

Summary

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branch: rosetta:commits 「№21125」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№639」
Merge: 「c6e41681b」← 「c6037e60b」 code diff
Scheduled at: 2026-03-27 22:49:20.015942

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←c6037e60b06a368b2b3dfb2db76ebe9128d8c264 Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: New Pose per subprocess

Summary

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branch: rosetta:commits 「№21124」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№639」
Merge: 「c6e41681b」← 「0cc881dc1」 code diff
Scheduled at: 2026-03-27 21:40:40.690390

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←0cc881dc1cddff7e545e18ca83d8f5f613b283da Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: Add Pose data; enable verbose

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: ubuntu-24.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

branch: rosetta:commits 「№21123」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№638」
Merge: 「a8f70994f」← 「24a3c1111」 code diff
Scheduled at: 2026-03-27 19:13:02.722942

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←24a3c1111dae46111ee0364bd6cb87599d65c2ce Generate type stubs when building packages ---------------- Merge commit message: Refresh setup.py and update Conda build procedure to generate type stubs

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Test: ubuntu.clang.cxx11thread.serialization.python38.release.PyRosetta.Release

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Test: mac.clang.cxx11thread.serialization.python38.release.PyRosetta.conda.Release

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Test: ubuntu.clang.cxx11thread.serialization.python38.release.PyRosetta.conda.Release

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branch: rosetta:commits 「№21122」
Commited by: Jason C. Klima
GitHub commit link: 「e5a76a2dbd7e42e1」
Difference from previous tested commit: code diff
Commit date: 2026-02-03 01:21:37

Update SecureUnpickler disallowed packages (#611) This PR updates the `pyrosetta.secure_unpickle.SecureUnpickler` class to block some additional callable targets via the `pickle` module, including `numpy.load` and `pandas.read_pickle` modules. Unit tests added herein demonstrate that secure `numpy`/`pandas` modules like `numpy.array` and `pandas.DataFrame` are still deserializable.

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Test: ubuntu.clang.cxx11thread.serialization.python310.release.PyRosetta.conda.Release

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Test: linux.clang.python312.scripts.pyrosetta

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Test: ubuntu-20.04.clang.python312.scripts.pyrosetta

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branch: rosetta:commits 「№21121」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№638」
Merge: 「a8f70994f」← 「04f6d2f57」 code diff
Scheduled at: 2026-03-27 14:52:08.146962

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←04f6d2f57c302a7843a922d57d12d895add376ef Generate type stubs when building packages ---------------- Merge commit message: Generate type stubs

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Test: m1.clang.cxx11thread.serialization.python314.release.PyRosetta.Release

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Test: mac.clang.python312.release.PyRosetta.Release

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python314.release.PyRosetta.Release

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Test: ubuntu.clang.python312.release.PyRosetta.Release

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branch: rosetta:commits 「№21120」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№637」
Merge: 「a8f70994f」← 「031f5ce9a」 code diff
Scheduled at: 2026-03-27 13:35:41.592544

Pull Request №637 RosettaCommons/rosetta/main ← klimaj/rosetta/stress_test Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←031f5ce9a9ba79b3c25f1cb811f26d576d46ef6c Stress test subprocess concurrency on Benchmark server ---------------- Merge commit message: Temporarily rename sub-tests

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Test: mac.clang.cxx11thread.serialization.python38.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

Test: mac.clang.cxx11thread.serialization.python39.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

Test: ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit

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Test: ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit

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Test: ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit

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Test: ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit

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Test: ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

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Test: ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit

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Test: ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit

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Test: ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit

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Test: ubuntu-22.04.clang.cxx11thread.serialization.python314.PyRosetta.unit

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Test: ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit

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Test: ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit

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Test: ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-22.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

Test: ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python314.PyRosetta.unit

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Test: ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit

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Test: ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit

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Test: ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit

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Test: ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit

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Test: ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit

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Test: ubuntu-24.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit

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Test: ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

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branch: rosetta:commits 「№21119」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№637」
Merge: 「a8f70994f」← 「5742ca31e」 code diff
Scheduled at: 2026-03-27 02:52:47.969437

Pull Request №637 RosettaCommons/rosetta/main ← klimaj/rosetta/stress_test Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←5742ca31e604a99aca4d8d665e97a75af55477c4 Stress test subprocess concurrency on Benchmark server ---------------- Merge commit message: Add pose serialization

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

Test: ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

Test: ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

Test: ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

Test: ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit

Failed sub-tests (click for more details):
A001_stress_test

branch: rosetta:commits 「№21118」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№637」
Merge: 「a8f70994f」← 「27f6b28ce」 code diff
Scheduled at: 2026-03-26 21:28:17.547442

Pull Request №637 RosettaCommons/rosetta/main ← klimaj/rosetta/stress_test Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←27f6b28cebccb8fa2c5ec666ecf587df84c461c9 Stress test subprocess concurrency on Benchmark server ---------------- Merge commit message: Initial commit

Summary

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branch: rosetta:commits 「№21117」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№636」
Merge: 「a8f70994f」← 「4b3f7c1af」 code diff
Scheduled at: 2026-03-26 18:38:39.191572

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←4b3f7c1afb11005612320dabb1d9866481a0141f Test splitting T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Initial commit

Summary

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branch: rosetta:commits 「№21116」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№588」
Merge: 「612b6ef9e」← 「798931eac」 code diff
Scheduled at: 2026-03-26 15:14:02.681670

Pull Request №588 RosettaCommons/rosetta/main ← htruscott/rosetta/pyrosetta_stubs Merge: 612b6ef9e9d4638e6f1e47fabee02587d9453733←798931eac0d19e229191ee2970f7bbc42401595f add *.pyi stub generation support for bindings in rosetta.so ---------------- Merge commit message: Add a new-line to .gitignore

Summary

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queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled