Pushed Revisions

Branch:

< 1 .. 10 11 12 13 14 15 16 17 18 19 20 >

Want to just scroll to particular revision? - use dynamic loading page! legend

branch: rosetta:commits 「№20343」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№32」
Merge: 「2c36cbc71」← 「872cd9be8」 code diff
Scheduled at: 2024-03-16 17:27:54.728599

Pull Request №32 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: 2c36cbc7108d85646ca5b8ddc89c29ac1ccde88e←872cd9be88e92bb7e19eb3a6e3e405537930b818 add support for PyRosetta ML builds ---------------- Merge commit message: add support for `--tensorflow` option

Summary

...

branch: rosetta:commits 「№20342」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№33」
Merge: 「2c36cbc71」← 「38ac3d7a1」 code diff
Scheduled at: 2024-03-16 17:15:56.300929

Pull Request №33 RosettaCommons/rosetta/main ← klimaj/rosetta/residue_selectors Merge: 2c36cbc7108d85646ca5b8ddc89c29ac1ccde88e←38ac3d7a137caf2d734773654b58dd54b76057a5 Support python bitwise operators for residue selectors in PyRosetta ---------------- Merge commit message: Add residue selector bindings test suite

Summary

...

branch: rosetta:commits 「№20341」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№33」
Merge: 「2c36cbc71」← 「7e1b1d6be」 code diff
Scheduled at: 2024-03-16 16:57:00.274131

Pull Request №33 RosettaCommons/rosetta/main ← klimaj/rosetta/residue_selectors Merge: 2c36cbc7108d85646ca5b8ddc89c29ac1ccde88e←7e1b1d6be174370179c90c4d639a295fcbd5855e Support python bitwise operators for residue selectors in PyRosetta ---------------- Merge commit message: Update comments

Summary

...

branch: rosetta:commits 「№20340」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№32」
Merge: 「2c36cbc71」← 「616793879」 code diff
Scheduled at: 2024-03-15 21:08:02.870751

Pull Request №32 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: 2c36cbc7108d85646ca5b8ddc89c29ac1ccde88e←6167938798fbfb86d011d67d26f19e8d28e9a92b add support for PyRosetta ML builds ---------------- Merge commit message: update Binder

Summary

...

branch: rosetta:commits 「№20339」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№32」
Merge: 「2c36cbc71」← 「e99b1292c」 code diff
Scheduled at: 2024-03-15 17:12:30.079972

Pull Request №32 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: 2c36cbc7108d85646ca5b8ddc89c29ac1ccde88e←e99b1292c6e9c5b0e74581f73a4c339db8a41453 add support for PyRosetta ML builds ---------------- Merge commit message: add `--torch` option

Summary

...

branch: rosetta:commits 「№20338」
Commited by: moritzertelt
GitHub Pull Request link: 「№26」
Merge: 「2c36cbc71」← 「d210bd3ee」 code diff
Scheduled at: 2024-03-12 10:16:26.269019

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №26 RosettaCommons/rosetta/main ← MoritzErtelt/rosetta/SamplingModification Merge: 2c36cbc7108d85646ca5b8ddc89c29ac1ccde88e←d210bd3ee7216d7c15fc1ad4c3f8fc0e526d91dd QOL update to the PerResidueEsmProbabilitiesMetric ---------------- Merge commit message: Quality of life updates including: Citation for ESM, Softmax and Perplexity numerical stability by checking for Inf and NaNs, typos

Rosetta Benchmark 8 months
Tests for this revision was automatically canceled because newer set of tests for pull-request №26 was submitted!

...

Test: linux.gcc.code_quality.beautification

View log

View log in dialog View log in log in separate window

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
database_md5 replica_docking

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
ThreadingInputter cyclization database_md5 ddG_of_mutation features fiber_diffraction_fad fold_and_dock metalloprotein_broker output_schema

Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5

Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5

Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
ThreadingInputter cyclization database_md5 ddG_of_mutation fiber_diffraction_fad fold_and_dock metalloprotein_broker output_schema

Test: linux.clang.profile

Failed sub-tests (click for more details):
hotspot_hashing jd2test loop_modeling monte_carlo_hbnet relax_native

branch: rosetta:commits 「№20337」
Commited by: tydingcw
GitHub Pull Request link: 「№24」
Merge: 「717d2e823」← 「02fcf5a22」 code diff
Scheduled at: 2024-02-28 14:47:14.652815

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №24 RosettaCommons/rosetta/main ← tydingcw/rosetta/crosslinkmover_lanthionine Merge: 717d2e8232174371f0c672564f23a097062db88a←02fcf5a228d92476888c10023b55fa8d2d43dfd0 Crosslinker Mover lanthionine ---------------- Merge commit message: beautifier

...

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
database_md5 replica_docking simple_cycpep_predict_beta_thioether_lariat simple_cycpep_predict_lanthionine simple_cycpep_predict_thioether_lariat

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
ambiguous_nmr_distance_constraint autoNOE_rosetta crosslinkermover_lanthionine crosslinkermover_methyllanthionine cyclization database_md5 ddG_of_mutation dehydro_aa_patch design_glycans fiber_diffraction_fad fold_and_dock noe_assignment number_of_residuetypes output_schema simple_cycpep_predict_beta_thioether_lariat simple_cycpep_predict_lanthionine simple_cycpep_predict_thioether_cis_sampling simple_cycpep_predict_thioether_lariat small_molecule_lattice_dock

Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5

Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5

Test: mac.clang.python39.integration

Test: linux.clang.performance

Failed sub-tests (click for more details):
basic_options_OptionCollection core_import_pose_pose_from_pdbstring core_scoring_Score instantiate_modules_filters instantiate_modules_movers instantiate_modules_packer_palettes instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors instantiate_modules_simple_metrics instantiate_modules_task_operations protocols_docking_DockingHighRes protocols_docking_DockingLowRes protocols_moves_ShearMover protocols_moves_SmallMover protocols_optimization_Minimizer_dfpmin protocols_optimization_Minimizer_dfpmin_armijo protocols_optimization_Minimizer_dfpmin_armijo_nonmonotone utility_tag_Tag_Create

Test: linux.clang.profile

Failed sub-tests (click for more details):
FloppyTail build_rotamers jd2test loop_modeling relax_native

branch: rosetta:commits 「№20336」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」← 「e09da1523」 code diff
Scheduled at: 2024-02-25 14:20:51.881543

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←e09da15232da4d908b96ec6f8c328a46308556ff Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Fix docstrings and error messages

...

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features small_molecule_lattice_dock

Test: linux.clang.performance

Failed sub-tests (click for more details):
instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors

Test: linux.clang.profile

Failed sub-tests (click for more details):
loop_modeling monte_carlo_hbnet relax_native

branch: rosetta:commits 「№20335」
Commited by: tydingcw
GitHub Pull Request link: 「№24」
Merge: 「717d2e823」← 「4081b0e20」 code diff
Scheduled at: 2024-02-25 11:41:17.697765

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №24 RosettaCommons/rosetta/main ← tydingcw/rosetta/crosslinkmover_lanthionine Merge: 717d2e8232174371f0c672564f23a097062db88a←4081b0e20342da76c87efd8c04ef162a26132ee0 Crosslinker Mover lanthionine ---------------- Merge commit message: fixing terminal AA amgibuouos constraints and simple cycy pep predict thioether making only cis peptide bonds at N terminus

...

Test: linux.gcc.code_quality.beautification

View log

View log in dialog View log in log in separate window

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
database_md5 replica_docking simple_cycpep_predict_beta_thioether_lariat simple_cycpep_predict_lanthionine simple_cycpep_predict_thioether_lariat

Test: linux.clang.integration.release_debug_no_symbols

Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5

Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5

Test: mac.clang.python39.integration

Test: linux.clang.profile

Failed sub-tests (click for more details):
abinitio build_rotamers relax_native

branch: rosetta:commits 「№20334」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」← 「1c25cd284」 code diff
Scheduled at: 2024-02-24 20:48:40.099021

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←1c25cd28448e86e7c056146667ab70b3ad61167f Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Fix docstring

...

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features

Test: linux.clang.performance

Failed sub-tests (click for more details):
instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors

Test: linux.clang.profile

Failed sub-tests (click for more details):
fixbb jd2test relax_native

branch: rosetta:commits 「№20333」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」← 「fd7293ab8」 code diff
Scheduled at: 2024-02-24 17:18:33.674258

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←fd7293ab8baca64eedbd4003d2944ac222c8d977 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Test closing cluster

...

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features

Test: linux.clang.performance

Failed sub-tests (click for more details):
instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors

Test: linux.clang.profile

Failed sub-tests (click for more details):
FloppyTail abinitio fixbb hotspot_hashing loop_modeling monte_carlo_hbnet relax_native rosie_ligand_dock

Test: linux.gcc.cxx11thread.serialization.unit

Failed sub-tests (click for more details):
protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds

branch: rosetta:commits 「№20332」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」← 「6fa4dce94」 code diff
Scheduled at: 2024-02-24 16:51:11.761911

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←6fa4dce940774a6acc648b9acd8c0b76cdc5c780 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Refactor class attribute for testing

...

Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features

branch: rosetta:commits 「№20331」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」← 「5c638b41f」 code diff
Scheduled at: 2024-02-24 15:28:23.987507

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←5c638b41f95cb57c02c33f2b15e8ec13454fb720 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Validate min len 1

...

Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features small_molecule_lattice_dock

Test: linux.clang.performance

Failed sub-tests (click for more details):
instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors

Test: linux.clang.profile

Failed sub-tests (click for more details):
abinitio docking fixbb

branch: rosetta:commits 「№20330」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」← 「5d167d977」 code diff
Scheduled at: 2024-02-24 15:23:45.512239

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←5d167d9778e667044e9d6868b60a4975bed696a5 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Validate min len for clients attribute for earlier versions of attrs

Summary
PyRosetta.unit 「1」

...

Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

branch: rosetta:commits 「№20329」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」← 「46f6ce801」 code diff
Scheduled at: 2024-02-23 12:11:12.738960

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←46f6ce801e0da4180888ca617a928a99907bd366 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Update typing

...

Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

Failed sub-tests (click for more details):
T900_distributed

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features small_molecule_lattice_dock

Test: linux.clang.performance

Failed sub-tests (click for more details):
basic_options_OptionCollection core_import_pose_pose_from_pdbstring core_scoring_Score instantiate_modules_filters instantiate_modules_movers instantiate_modules_packer_palettes instantiate_modules_residue_selectors instantiate_modules_simple_metrics instantiate_modules_task_operations protocols_docking_DockingHighRes protocols_docking_DockingLowRes protocols_moves_ShearMover protocols_moves_SmallMover protocols_optimization_Minimizer_dfpmin protocols_optimization_Minimizer_dfpmin_armijo protocols_optimization_Minimizer_dfpmin_armijo_nonmonotone utility_tag_Tag_Create

Test: linux.clang.profile

Failed sub-tests (click for more details):
AnchoredDesign FloppyTail hotspot_hashing

branch: rosetta:commits 「№20328」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№22」
Merge: 「801ac8afe」← 「49bbd52b5」 code diff
Scheduled at: 2024-02-20 12:30:21.873098

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №22 RosettaCommons/rosetta/main ← roccomoretti/rosetta/cart_bonded_upper_fix Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←49bbd52b5e4e55f47c1796a923aa4c9ddf173bc1 Fix issue with CartesianBondedEnergy. ---------------- Merge commit message: Fix issue with CartesianBondedEnergy. Calling rsd1.upper_connect() is not well formed if the residue is not an upper connection. CartesianBondedEnergy makes the assumption that if you're not an upper terminus, you have an upper connect. This isn't always the case with more esoteric residues. But if we combine with the is-protein check that is being done anyway, we can avoid the majority of the cases where this may be a problem.

...

Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking

Test: linux.clang.performance

Failed sub-tests (click for more details):
instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors

Test: linux.clang.profile

Failed sub-tests (click for more details):
AnchoredDesign FloppyTail abinitio build_rotamers docking fixbb hotspot_hashing ligand_dock_7cpa rosie_ligand_dock

< 1 .. 10 11 12 13 14 15 16 17 18 19 20 >

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled