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branch: rosetta:commits 「№20974」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№523」
Merge: 「dd237bff7」← 「708bde35d」  code diff
Scheduled at: 2025-09-19 23:49:52.825480
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №523 RosettaCommons/rosetta/main ← klimaj/rosetta/unpickle Merge: dd237bff7744593e0c8be997f152476a3630ba31←708bde35d7e31bba06d4ed9a562b7a4c2142132f Supporting secure unpickling in PyRosetta ---------------- Merge commit message: Set SecureSerializerBase._pickle_protocol to pickle.DEFAULT_PROTOCOL

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branch: rosetta:commits 「№20973」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№524」
Merge: 「dd237bff7」← 「6e4fc1c8d」  code diff
Scheduled at: 2025-09-19 20:26:37.493174
m1.clang.python314.PyRosetta.unit mac.clang.python314.PyRosetta.unit ml.clang.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit m1.clang.cxx11thread.serialization.python314.release.PyRosetta.conda.Release mac.clang.cxx11thread.serialization.python314.release.PyRosetta.conda.Release ubuntu.clang.cxx11thread.serialization.python314.release.PyRosetta.conda.Release

Pull Request №524 RosettaCommons/rosetta/main ← lyskov/rosetta/python-3.14 Merge: dd237bff7744593e0c8be997f152476a3630ba31←6e4fc1c8d2e3ca168db4ea65c171efdebfda4bba add support for Python-3.14 ---------------- Merge commit message: add python-3.14

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Test: m1.clang.cxx11thread.serialization.python314.release.PyRosetta.conda.Release

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Test: mac.clang.cxx11thread.serialization.python314.release.PyRosetta.conda.Release

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Test: ubuntu.clang.cxx11thread.serialization.python314.release.PyRosetta.conda.Release

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branch: rosetta:commits 「№20972」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№523」
Merge: 「dd237bff7」← 「81cee737b」  code diff
Scheduled at: 2025-09-19 19:33:18.782694
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №523 RosettaCommons/rosetta/main ← klimaj/rosetta/unpickle Merge: dd237bff7744593e0c8be997f152476a3630ba31←81cee737bfc7c4a2e1eec3b46b25d71681207f96 Supporting secure unpickling in PyRosetta ---------------- Merge commit message: Merge branch 'main' into unpickle

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Test: gcc-9.gcc.python37.PyRosetta.unit

Failed sub-tests (click for more details):
T300_PyJobDistributor


branch: rosetta:commits 「№20971」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№517」
Merge: 「df75a9c48」← 「c3a6e9222」  code diff
Scheduled at: 2025-09-18 19:48:29.258914
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit release.PyRosetta.documentation ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №517 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←c3a6e92225e07cea632dda96759f22e778572918 update pyrosetta_documentation release-test script ---------------- Merge commit message: fix string formatting

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branch: rosetta:commits 「№20970」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№517」
Merge: 「df75a9c48」← 「9538761bc」  code diff
Scheduled at: 2025-09-18 14:45:01.025662
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit release.PyRosetta.documentation ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №517 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←9538761bcf073685b1f85df636cc025d0f25ea69 update pyrosetta_documentation release-test script ---------------- Merge commit message: disable test run on imports

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Test: ubuntu-20.04.clang.cxx11thread.serialization.python311.release.PyRosetta.documentation

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branch: rosetta:commits 「№20969」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№503」
Merge: 「df75a9c48」← 「83b067026」  code diff
Scheduled at: 2025-09-17 17:19:09.675420
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №503 RosettaCommons/rosetta/main ← klimaj/rosetta/init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←83b067026aed043a2959869e6f6cc846a7318c9b Supporting a universal PyRosetta initialization file ---------------- Merge commit message: git checkout cluster_init

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branch: rosetta:commits 「№20968」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№520」
Merge: 「df75a9c48」← 「4bdac7d57」  code diff
Scheduled at: 2025-09-17 17:19:05.798464
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №520 RosettaCommons/rosetta/main ← roccomoretti/rosetta/fix_highresdocker_copy Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←4bdac7d574897a0e0838873f2392405098cabc1a Fix dropped settings issues in HighResDocker ---------------- Merge commit message: Fix dropped settings issues in HighResDocker The copy constructor of HighResDocker was not copying over the resfile_ member, which means it was ignoring that setting. Since the copy constructor is effectively a straight member-by-member copy, we can simply delete it and rely on the autogenerated copy constructor. Additionally, I noticed that the initialize_from_options() function was declaring local variables, rather than changing the member variables. Fix this.

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking


branch: rosetta:commits 「№20967」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№511」
Merge: 「df75a9c48」← 「e43e1e2f1」  code diff
Scheduled at: 2025-09-17 17:10:10.060736
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №511 RosettaCommons/rosetta/main ← klimaj/rosetta/cluster_init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←e43e1e2f14c13b88e6b785a4c33b95e737d92557 Integrating PyRosetta initialization files into PyRosettaCluster ---------------- Merge commit message: Update version

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branch: rosetta:commits 「№20966」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№511」
Merge: 「df75a9c48」← 「d430d3180」  code diff
Scheduled at: 2025-09-16 22:19:40.005208
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №511 RosettaCommons/rosetta/main ← klimaj/rosetta/cluster_init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←d430d31802a64dcb1689670cfffd9ee7ffe37483 Integrating PyRosetta initialization files into PyRosettaCluster ---------------- Merge commit message: Merge branch 'init' of github.com:klimaj/rosetta into cluster_init

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branch: rosetta:commits 「№20965」
Commited by: Rachel Clune
GitHub Pull Request link: 「№503」
Merge: 「df75a9c48」← 「72eace4ac」  code diff
Scheduled at: 2025-09-16 18:28:11.048373
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №503 RosettaCommons/rosetta/main ← klimaj/rosetta/init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←72eace4ace8e0ce8b32f9d018e6636160cbde25e Supporting a universal PyRosetta initialization file ---------------- Merge commit message: Add security warning for pickle usage in pose_from_init_file Added a warning about the security risks of using the pickle module in the pose_from_init_file function.

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branch: rosetta:commits 「№20964」
Commited by: Rachel Clune
GitHub Pull Request link: 「№462」
Merge: 「df75a9c48」← 「f399b4d7c」  code diff
Scheduled at: 2025-09-16 18:18:51.424101
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №462 RosettaCommons/rosetta/main ← klimaj/rosetta/cluster_io Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←f399b4d7cf438b71eeee5dad4ca1bb29fabee661 Support saving PackedPose objects and arbitrary score data in PyRosettaCluster ---------------- Merge commit message: Add warning to .pkl_pose and .b64_pose file information Added warning about the security issues that come with pickled files (https://docs.python.org/3/library/pickle.html).

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branch: rosetta:commits 「№20963」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№511」
Merge: 「df75a9c48」← 「17501690b」  code diff
Scheduled at: 2025-09-15 14:35:16.880245
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №511 RosettaCommons/rosetta/main ← klimaj/rosetta/cluster_init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←17501690bbf3e6fb5bfee1e6835c5373441b7949 Integrating PyRosetta initialization files into PyRosettaCluster ---------------- Merge commit message: Update imports

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branch: rosetta:commits 「№20962」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№511」
Merge: 「df75a9c48」← 「6cf7ef656」  code diff
Scheduled at: 2025-09-14 19:20:58.558502
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №511 RosettaCommons/rosetta/main ← klimaj/rosetta/cluster_init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←6cf7ef6561dcd1c6f5b76ae250d1c6aa280d4546 Integrating PyRosetta initialization files into PyRosettaCluster ---------------- Merge commit message: Update typing and docstrings

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branch: rosetta:commits 「№20961」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№503」
Merge: 「df75a9c48」← 「f4dd6514a」  code diff
Scheduled at: 2025-09-14 19:08:32.992042
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №503 RosettaCommons/rosetta/main ← klimaj/rosetta/init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←f4dd6514a71e68f7eef9839208a0e7b4e805f8c6 Supporting a universal PyRosetta initialization file ---------------- Merge commit message: git checkout cluster_init; Clean up setup_init_dict and read_json methods; Abridge line lengths; Define PyRosettaIsInitializedError and PyRosettaIsNotInitializedError

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branch: rosetta:commits 「№20960」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№503」
Merge: 「df75a9c48」← 「345eff325」  code diff
Scheduled at: 2025-09-10 22:01:39.226832
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №503 RosettaCommons/rosetta/main ← klimaj/rosetta/init Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←345eff325bbfa1b95f9ad906896e059ae9930639 Supporting a universal PyRosetta initialization file ---------------- Merge commit message: Catch 'poses' argument parameter with TypeError if not pose or iterable

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branch: rosetta:commits 「№20959」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№517」
Merge: 「df75a9c48」← 「77ca5fc9e」  code diff
Scheduled at: 2025-09-10 17:58:02.792670
release.PyRosetta.documentation

Pull Request №517 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: df75a9c48e763e52a7aa3f5dfba077f4da88dbf5←77ca5fc9e112c4b9d17d4cc0af4452cc0428d128 update pyrosetta_documentation release-test script ---------------- Merge commit message: add doc generation for __init__ functions

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