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branch: commits 「№14185」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№4365」
Merge: 「e1e61459e」「293b22e4a」  code diff
Scheduled at: 2019-11-13 21:56:20.808815
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit

Pull Request №4365 master←sergey/binder Merge: e1e61459e6ead5a43804d6e96e4ac8ff9a6bd404←293b22e4a68cf2d6ed020d6239386d3529568307 Binder update to fix PyRosetta build on GCC-7/8/9 ---------------- Merge commit message: Updating Binder, adding include map for `std::function`.

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branch: commits 「№14184」
Commited by: James Scott
GitHub Pull Request link: 「№4364」
Merge: 「516ead2bd」「a8d6b6dfb」  code diff
Scheduled at: 2019-11-13 18:27:22.187105
foldit.build.debug foldit.build.release foldit.defines foldit.levels foldit.unit.debug foldit.unit.release

Pull Request №4364 interactive/develop←jtscott/interactive_ligand_remix_viewport Merge: 516ead2bd3ffd1175864048c02a7d0c39c8c01fd←a8d6b6dfbd8e5f6f90da2d835832e292e0c8ec62 Foldit: Ligand Reaction Design Tool ---------------- Merge commit message: Merge from interactive/develop and merge conflict resolution

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branch: commits 「№14183」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№4363」
Merge: 「e1e61459e」「21545a874」  code diff
Scheduled at: 2019-11-13 17:45:03.103592
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.clang.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static linux.ui mac.ui beautification code_quality.clang_tidy serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4363 master←roccomoretti/clang_tidy_3 Merge: e1e61459e6ead5a43804d6e96e4ac8ff9a6bd404←21545a874b7557bc9a30556c7c38d1ca577c1bea Fix issues identified by the misc-* series of clang-tidy tests. ---------------- Merge commit message: Per Jack, delete apparently unused blocks.

Rosetta Benchmark 2 hours
Tests for this revision was automatically canceled due to critical failure of test: linux.gcc.mpi.build.debug
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Test: linux.clang.serialization.python37.PyRosetta4.unit

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T900_distributed
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Test: ubuntu.clang.code_quality.clang_tidy

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src/protocols/tcr/template_util.cc
Test: linux.gcc.mpi.serialization.integration.mpi

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branch: commits 「№14182」
Commited by: Andrew Leaver-Fay
GitHub Pull Request link: 「№4017」
Merge: 「93f10bc3d」「f151cbb89」  code diff
Scheduled at: 2019-11-13 17:21:55.128828
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4017 master←aleaverfay/matcher_bugfix_Jun2019 Merge: 93f10bc3df39bbe5fe2aae94748c0c62fab3c5e1←f151cbb89405e4f18dcf92f3d034b9533e974c7c Aleaverfay/matcher bugfix jun2019 ---------------- Merge commit message: Merge master into bugfix branch



branch: commits 「№14181」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№4363」
Merge: 「e1e61459e」「90a1c3c51」  code diff
Scheduled at: 2019-11-13 17:19:32.254474
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4363 master←roccomoretti/clang_tidy_3 Merge: e1e61459e6ead5a43804d6e96e4ac8ff9a6bd404←90a1c3c51f961d60da22918d8151fe1b9c9ceb42 Fix issues identified by the misc-* series of clang-tidy tests. ---------------- Merge commit message: Update clang-tidy test hook to now test the misc-* set of tests.



branch: commits 「№14180」
Commited by: Sergey Lyskov
GitHub commit link: 「293b22e4a68cf2d6」
Commit date: 2019-11-13 21:20:41
gcc-9.gcc.python37.PyRosetta4.unit linux.clang.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit ubuntu.clang.python36.PyRosetta4.unit

Updating Binder, adding include map for `std::function`.

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Test: linux.clang.serialization.python37.PyRosetta4.unit

Failed sub-tests (click for more details):
T900_distributed


branch: commits 「№14179」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4361」
Merge: 「e1e61459e」「4389e1756」  code diff
Scheduled at: 2019-11-13 15:05:23.356637
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit

Pull Request №4361 master←vmullig/clang_analysis_issues_again Merge: e1e61459e6ead5a43804d6e96e4ac8ff9a6bd404←4389e1756ea60037bc8920f3feeca7d8dbfb7d03 Fixing a "not read" error flagged by clang analysis. ---------------- Merge commit message: Fixing a "not read" error flagged by clang analysis.

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branch: commits 「№14178」
Commited by: Vikram K. Mulligan
GitHub commit link: 「4389e1756ea60037」
Commit date: 2019-11-13 19:57:03
code_quality.clang_analysis code_quality.clang_tidy

Fixing a "not read" error flagged by clang analysis.

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branch: commits 「№14177」
Commited by: bcov77
GitHub Pull Request link: 「№4359」
Merge: 「e1e61459e」「e5a6fdbdb」  code diff
Scheduled at: 2019-11-13 11:02:13.007221
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit build.levels beautification integration.release_debug integration

Pull Request №4359 master←bcov/ContactMS Merge: e1e61459e6ead5a43804d6e96e4ac8ff9a6bd404←e5a6fdbdb24a8c4e0a68216fccd8ea66076028ce Adding Contact Molecular Surface - a higher res SASA filter ---------------- Merge commit message: Changed some debugging comments



branch: commits 「№14176」
Commited by: Sergey Lyskov
GitHub commit link: 「9c977e54927a983b」
Commit date: 2019-11-13 03:30:15
gcc-9.gcc.python37.PyRosetta4.unit ubuntu.clang.python36.PyRosetta4.unit

updating Binder submodule

Rosetta Benchmark 1 day
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branch: commits 「№14175」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№4360」
Merge: 「e1e61459e」「41e5fa2da」  code diff
Scheduled at: 2019-11-12 20:12:03.225027
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.icc.build.debug OpenCL mac.clang.python36.build.debug linux.ui mac.ui build.xcode code_quality.clang_analysis integration.tensorflow integration.thread performance profile release.source linux.clang.unit.release linux.gcc.unit.release util.apps

Pull Request №4360 master←roccomoretti/boost_submod Merge: e1e61459e6ead5a43804d6e96e4ac8ff9a6bd404←41e5fa2da62747a2cc6ee26d5e086135a95efbf0 Update Boost to 1.71, convert to submodules. ---------------- Merge commit message: Add boost submodules to the update_submodules script.

Rosetta Benchmark 1 day
Tests for this revision was automatically canceled due to critical failure of test: linux.gcc.python36.PyRosetta4.unit
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Test: mac.clang.python27.build.xcode

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Test: linux.clang.code_quality.clang_analysis

Failed sub-tests (click for more details):
src/protocols/tcr/template_util.cc
Test: linux.clang.performance

Failed sub-tests (click for more details):
protocols_ligand_docking_LigandDockProtocol
Test: linux.clang.profile

Failed sub-tests (click for more details):
jd2test
Test: linux.clang.release.source

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branch: commits 「№14174」
Commited by: bcov77
GitHub Pull Request link: 「№4357」
Merge: 「a984b21f9」「a98e9a761」  code diff
Scheduled at: 2019-11-12 18:36:28.762506
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4357 master←bcov/SliceResidueSelector Merge: a984b21f93b91dedebc8a45440370bfa3d5877f5←a98e9a761786bdcddb6f4ba3d968c9cbe9eea7e2 SliceResidueSelector for selecting from selections ---------------- Merge commit message: Fixed another serialization compile error

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Test: mac.clang.integration

Failed sub-tests (click for more details):
swm_general_polymer_sampler
Test: linux.clang.performance

Failed sub-tests (click for more details):
core_scoring_Score_100x_envsmooth


branch: commits 「№14173」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4342」
Merge: 「a984b21f9」「f68162334」  code diff
Scheduled at: 2019-11-12 17:41:00.923844
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4342 master←vmullig/multithreaded_scoring2 Merge: a984b21f93b91dedebc8a45440370bfa3d5877f5←f681623344468773132a5cfc11c80cfe5171e173 Enable multi-threaded scoring ---------------- Merge commit message: In the wrong place. That was silly.

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Test: linux.gcc.code_quality.beautification

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AnchoredDesign AnchoredPDBCreator DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FilterReportAsPoseExtraScoresMover FloppyTail InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LoopAnalyzer LoopLengthChange ModifyVariantTypeMover RBOut ResidueDisorder SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 autosetup_metals_centroid backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer binselector binselector_probins broker buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification centroid_from_fullatom classic_relax_1a19 cleanAlignment cluster_alns constel coupled_moves create_clash-based_repack_shell create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints drrafter_run duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution extract_atomtree_diffs farfar_mrna farnesyl fast_relax favor_native_residue features features_database_schema features_parallel features_pdb fiber_diffraction_fad fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_cst_new fold_from_loops fuzzy ga_ligand_dock gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hts_io hybridization hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout jscore kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_symmdef_file match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mirror_symm mmtfIO_score_test motif_dna_packer_design motif_score_filter mp_dock mp_find_interface mp_mutate_relax mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_span_ang_ref2015_memb mp_symdock mp_symmetry_load mpi_multistate_design mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities nonideal_rtmin nucleobase_sample_around oligourea_design oligourea_predict oop_design orbitals peptiderive per_residue_energies pertmin phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif range_relax_w_cst rb_recces readin_dna_rna_protein real_virt_mover recces_turner recon_design relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator rna_add_WC_stats rna_assemble rna_assemble_legacy rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_base_pair_setup_legacy rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_bps_helix_ends_legacy rna_denovo_bps_legacy rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_grid_vdw_legacy rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_minimize rna_motif rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sasa_metric_options score12_docking score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI selected_residue_count_metric sequence_recovery set_torsion shobuns simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset struc_set_fragment_picker supercharge surface_docking swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource tcrmodel test1_benchmark thermal_sampler threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling vancomycin voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
Test: mac.clang.integration

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AnchoredDesign AnchoredPDBCreator DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FilterReportAsPoseExtraScoresMover FloppyTail InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LoopAnalyzer LoopLengthChange ModifyVariantTypeMover RBOut ResidueDisorder SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 autosetup_metals_centroid backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer binselector binselector_probins broker buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification centroid_from_fullatom classic_relax_1a19 cleanAlignment cluster_alns constel coupled_moves create_clash-based_repack_shell create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints drrafter_run duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution extract_atomtree_diffs farfar_mrna farnesyl fast_relax favor_native_residue features features_database_schema features_parallel features_pdb fiber_diffraction_fad fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_cst_new fold_from_loops fuzzy ga_ligand_dock gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hts_io hybridization hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design inverse_rotamer_remodel jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout jscore kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_symmdef_file match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mirror_symm mmtfIO_score_test motif_dna_packer_design motif_score_filter mp_dock mp_find_interface mp_mutate_relax mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_relax_w_ligand mp_span_ang_ref2015_memb mp_symdock mp_symmetry_load mpi_multistate_design mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities nonideal_rtmin nucleobase_sample_around oligourea_design oligourea_predict oop_design orbitals peptiderive per_residue_energies pertmin phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif range_relax_w_cst rb_recces readin_dna_rna_protein real_virt_mover recces_turner recon_design relax_w_allatom_cst remodel remodel_disulfides remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator rna_add_WC_stats rna_assemble rna_assemble_legacy rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_base_pair_setup_legacy rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_bps_helix_ends_legacy rna_denovo_bps_legacy rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_grid_vdw_legacy rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_minimize rna_motif rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sasa_metric_options score12_docking score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI selected_residue_count_metric sequence_recovery set_torsion shobuns simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset struc_set_fragment_picker supercharge surface_docking swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource tcrmodel test1_benchmark thermal_sampler threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling vancomycin voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
Test: linux.gcc.cxx11thread.serialization.unit

Failed sub-tests (click for more details):
core:BinarySilentMultiposeTests:test_save_multiple_poses_and_restore core:BinarySilentMultiposeTests:test_save_multiple_poses_with_resize_and_restore core:BinarySilentTests:test_read_badly_formatted_silent_file core:BinarySilentTests:test_save_and_restore core:BinarySilentTests:test_save_and_restore_centroid core:BinarySilentTests:test_save_and_restore_inserting_residues core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:ClashBasedRepackShellTests:test_xml_tag core:ContactOrderEnergy_Tests:test_eval_energy core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_yhh_planarity core:EnvSmoothEnergyTests:test_envsmooth_deriv_check_w_full_bb_flexibility core:EnvSmoothEnergyTests:test_setup_for_minimizing_with_envsmooth_and_partial_bbflex core:EnvSmoothEnergyTests:test_setup_for_minimizing_with_envsmooth_partial_bb_flex_and_full_sc_flex core:FA_ElecEnergyTests:test_elec_default_settings core:FA_ElecEnergyTests:test_elec_die core:FA_ElecEnergyTests:test_elec_max_dis core:FA_ElecEnergyTests:test_elec_min_dis core:FA_ElecEnergyTests:test_elec_no_dis_dep_die core:HBondEnergyTests:test_hbond_shift_hbond_energy_functionality core:MPHelicalityTests:test_burial_sigmoid core:MPHelicalityTests:test_calc_energy core:MPHelicalityTests:test_calc_residue_burial core:MPHelicalityTests:test_cen_neighbors core:MPHelicalityTests:test_fa_neighbors core:MPHelicalityTests:test_residue_energy core:MPResidueLipophilicityTests:test_burial_sigmoid core:MPResidueLipophilicityTests:test_calc_energy core:MPResidueLipophilicityTests:test_calc_residue_burial core:MPResidueLipophilicityTests:test_cen_neighbors core:MPResidueLipophilicityTests:test_fa_neighbors core:MinimizerTests:test_dfpmin core:MinimizerTests:test_dfpmin_armijo core:MinimizerTests:test_dfpmin_armijo_nonmonotone core:MinimizerTests:test_lbfgs_armijo core:MinimizerTests:test_lbfgs_armijo_nonmonotone core:MinimizerTests:test_linmin_iterated core:MinimizerTests:test_linmin_iterated_atol core:MinimizerTests:test_simple_min core:PoseUtilTests:test_chain_designations core:PoseUtilTests:test_chainid_functions core:PoseUtilTests:test_chainletter_functions core:PoseUtilTests:test_compare_atom_coordinates core:PoseUtilTests:test_conformation_sha1 core:PoseUtilTests:test_fix_pdbinfo_damaged_by_insertion core:PoseUtilTests:test_jump_functions core:PoseUtilTests:test_pose_float_map core:PoseUtilTests:test_pose_string_map core:PoseUtilTests:test_reasonable_foldtree core:PoseUtilTests:test_renumber_pdbinfo_based_on_conf_chains core:PoseUtilTests:test_unique_chains core:ScoreFunctionTest:test_ScoreFunction_list_options_read_in_sync core:SymmDL_betanov15_Tests:test_symm_DL_beta core:SymmDL_betanov15_Tests:test_symm_DL_cart_bonded core:SymmDL_betanov15_Tests:test_symm_DL_default_scorefxn core:SymmDL_betanov15_Tests:test_symm_DL_dslf_fa13 core:SymmDL_betanov15_Tests:test_symm_DL_fa_atr core:SymmDL_betanov15_Tests:test_symm_DL_fa_dun core:SymmDL_betanov15_Tests:test_symm_DL_fa_elec core:SymmDL_betanov15_Tests:test_symm_DL_fa_intra_rep core:SymmDL_betanov15_Tests:test_symm_DL_fa_intra_sol_xover4 core:SymmDL_betanov15_Tests:test_symm_DL_fa_rep core:SymmDL_betanov15_Tests:test_symm_DL_fa_sol core:SymmDL_betanov15_Tests:test_symm_DL_hbonds core:SymmDL_betanov15_Tests:test_symm_DL_lk_ball_wtd core:SymmDL_betanov15_Tests:test_symm_DL_omega core:SymmDL_betanov15_Tests:test_symm_DL_p_aa_pp core:SymmDL_betanov15_Tests:test_symm_DL_pro_close core:SymmDL_betanov15_Tests:test_symm_DL_rama core:SymmDL_betanov15_Tests:test_symm_DL_rama_prepro core:SymmDL_betanov15_Tests:test_symm_DL_rama_prepro2 core:SymmDL_betanov15_Tests:test_symm_DL_yhh_planarity core:SymmGlyTests:test_symm_gly_cart_bonded core:SymmGlyTests:test_symm_gly_default_scorefxn core:SymmGlyTests:test_symm_gly_fa_atr core:SymmGlyTests:test_symm_gly_fa_dun core:SymmGlyTests:test_symm_gly_fa_elec core:SymmGlyTests:test_symm_gly_fa_intra_rep core:SymmGlyTests:test_symm_gly_fa_rep core:SymmGlyTests:test_symm_gly_fa_sol core:SymmGlyTests:test_symm_gly_hbonds core:SymmGlyTests:test_symm_gly_omega core:SymmGlyTests:test_symm_gly_p_aa_pp core:SymmGlyTests:test_symm_gly_rama core:SymmGlyTests:test_symm_gly_rama_prepro core:SymmGlyTests:test_symm_gly_talaris2014 core:SymmGly_betanov15_Tests:test_symm_gly_beta_nov15 core:SymmGly_betanov15_Tests:test_symm_gly_cart_bonded core:SymmGly_betanov15_Tests:test_symm_gly_default_scorefxn core:SymmGly_betanov15_Tests:test_symm_gly_fa_atr core:SymmGly_betanov15_Tests:test_symm_gly_fa_dun core:SymmGly_betanov15_Tests:test_symm_gly_fa_elec core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_rep core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_sol_xover4 core:SymmGly_betanov15_Tests:test_symm_gly_fa_rep core:SymmGly_betanov15_Tests:test_symm_gly_fa_sol core:SymmGly_betanov15_Tests:test_symm_gly_hbonds core:SymmGly_betanov15_Tests:test_symm_gly_lk_ball_wtd core:SymmGly_betanov15_Tests:test_symm_gly_omega core:SymmGly_betanov15_Tests:test_symm_gly_p_aa_pp core:SymmGly_betanov15_Tests:test_symm_gly_rama core:SymmGly_betanov15_Tests:test_symm_gly_rama_prepro core:SymmetricMinimizerTests:test_fibril_symm_score core:SymmetricScoreTest:test_SymmetricScoreTest core:Symmetric_Binary_Protein_Silent_File_Tests:test_save_and_restore core:VirtualResidueScoreTest:test_centroid_vrt_scores core:VirtualResidueScoreTest:test_fa_vrt_scores protocols:GenerateMainchainPotentialTests:test_full_run_ALA protocols:GenerateMainchainPotentialTests:test_full_run_B3N protocols:GenerateMainchainPotentialTests:test_full_run_GLY_asymm protocols:GenerateMainchainPotentialTests:test_full_run_GLY_symm protocols:GenerateMainchainPotentialTests:test_full_run_VAL protocols:GenerateMainchainPotentialTests:test_full_run_VAL_prepro protocols:GenerateMainchainPotentialTests:test_pose_generation protocols:GenerateMainchainPotentialTests:test_pose_generation_prepro protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:OptimizeMembranePositionMoverTest:test_default_constructor protocols:OptimizeMembranePositionMoverTest:test_parse_my_tag_input protocols:RotamerRecoveryTests:test_RotamerRecovery_main protocols:SimpleMetricProtocolsTests:test_composite_real_metric protocols:SimpleMetricProtocolsTests:test_composite_string_metric protocols:SimpleMetricProtocolsTests:test_composite_total_energy_metric protocols:SimpleMetricProtocolsTests:test_dihedral_metric protocols:SimpleMetricProtocolsTests:test_protocol_settings_metric protocols:SimpleMetricProtocolsTests:test_real_metric protocols:SimpleMetricProtocolsTests:test_rmsd_metric protocols:SimpleMetricProtocolsTests:test_string_metric protocols:SimpleMetricProtocolsTests:test_total_energy_metric


branch: commits 「№14172」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4342」
Merge: 「a984b21f9」「bf311cc6b」  code diff
Scheduled at: 2019-11-12 17:31:40.671281
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4342 master←vmullig/multithreaded_scoring2 Merge: a984b21f93b91dedebc8a45440370bfa3d5877f5←bf311cc6bd103c3b5edc0f12aa41987c45d54014 Enable multi-threaded scoring ---------------- Merge commit message: Missing header.

Rosetta Benchmark 1 day
Tests for this revision was automatically canceled because newer set of tests for pull-request №4342 was submitted!
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branch: commits 「№14171」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4342」
Merge: 「a984b21f9」「7d564ee2d」  code diff
Scheduled at: 2019-11-12 17:22:21.551794
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4342 master←vmullig/multithreaded_scoring2 Merge: a984b21f93b91dedebc8a45440370bfa3d5877f5←7d564ee2df253600cd9398bcc9512e743abc8ba7 Enable multi-threaded scoring ---------------- Merge commit message: Fixing single-threaded build.

Rosetta Benchmark 1 day
Tests for this revision was automatically canceled because newer set of tests for pull-request №4342 was submitted!


branch: commits 「№14170」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4342」
Merge: 「a984b21f9」「5dabbf3e2」  code diff
Scheduled at: 2019-11-12 17:12:54.646186
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels ninja graphics static beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4342 master←vmullig/multithreaded_scoring2 Merge: a984b21f93b91dedebc8a45440370bfa3d5877f5←5dabbf3e23ce28ac3d29da7b9ecb4a0c6c94080a Enable multi-threaded scoring ---------------- Merge commit message: Merging simplicy_threadmanager_api into branch.

Rosetta Benchmark 1 day
Tests for this revision was automatically canceled due to critical failure of test: linux.clang.unit
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Test: linux.gcc.cxx11thread.serialization.unit

Failed sub-tests (click for more details):
core:BinarySilentMultiposeTests:test_save_multiple_poses_and_restore core:BinarySilentMultiposeTests:test_save_multiple_poses_with_resize_and_restore core:BinarySilentTests:test_save_and_restore core:BinarySilentTests:test_save_and_restore_inserting_residues core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:ContactOrderEnergy_Tests:test_eval_energy core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_yhh_planarity core:EnvSmoothEnergyTests:test_envsmooth_deriv_check_w_full_bb_flexibility core:EnvSmoothEnergyTests:test_setup_for_minimizing_with_envsmooth_and_partial_bbflex core:EnvSmoothEnergyTests:test_setup_for_minimizing_with_envsmooth_partial_bb_flex_and_full_sc_flex core:FA_ElecEnergyTests:test_elec_default_settings core:FA_ElecEnergyTests:test_elec_die core:FA_ElecEnergyTests:test_elec_max_dis core:FA_ElecEnergyTests:test_elec_min_dis core:FA_ElecEnergyTests:test_elec_no_dis_dep_die core:HBondEnergyTests:test_hbond_shift_hbond_energy_functionality core:MinimizerTests:test_dfpmin core:MinimizerTests:test_dfpmin_armijo core:MinimizerTests:test_dfpmin_armijo_nonmonotone core:MinimizerTests:test_lbfgs_armijo core:MinimizerTests:test_lbfgs_armijo_nonmonotone core:MinimizerTests:test_linmin_iterated core:MinimizerTests:test_linmin_iterated_atol core:MinimizerTests:test_simple_min core:PairEnergyTests:test_pairE_deriv_check_w_partial_flexibility core:PairEnergyTests:test_pairE_deriv_check_w_total_flexibility core:PairEnergyTests:test_pairE_start_score_start_func_match_w_partial_flexibility core:PairEnergyTests:test_pairE_start_score_start_func_match_w_total_flexibility core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group1 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group2 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group3 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group4 core:RotamerSetsTests:test_rotamer_set_residue_type_offsets core:RotamerSetsTests:test_rotamer_sets core:ScoreFunctionTest:test_ScoreFunction_list_options_read_in_sync core:SpanningTopologyTest:test_concatenate_topology core:SpanningTopologyTest:test_from_pdb1 core:SpanningTopologyTest:test_from_pdb2 core:SpanningTopologyTest:test_from_pdb3 core:SpanningTopologyTest:test_from_pdb4 core:SpanningTopologyTest:test_from_spanfile core:SpanningTopologyTest:test_is_valid core:SpanningTopologyTest:test_res_in_membrane core:SpanningTopologyTest:test_spanning_membrane core:SymmDLMin_betanov15_Tests:test_symm_DL_min_beta_nov15 core:SymmDLMin_betanov15_Tests:test_symm_DL_min_cart_bonded core:SymmDLMin_betanov15_Tests:test_symm_DL_min_current_default_scorefxn core:SymmDLMin_betanov15_Tests:test_symm_DL_min_dslf_fa13 core:SymmDLMin_betanov15_Tests:test_symm_DL_min_fa_atr core:SymmDLMin_betanov15_Tests:test_symm_DL_min_fa_dun core:SymmDLMin_betanov15_Tests:test_symm_DL_min_fa_elec core:SymmDLMin_betanov15_Tests:test_symm_DL_min_fa_intra_rep core:SymmDLMin_betanov15_Tests:test_symm_DL_min_fa_intra_sol_xover4 core:SymmDLMin_betanov15_Tests:test_symm_DL_min_fa_rep core:SymmDLMin_betanov15_Tests:test_symm_DL_min_fa_sol core:SymmDLMin_betanov15_Tests:test_symm_DL_min_hbonds core:SymmDLMin_betanov15_Tests:test_symm_DL_min_lk_ball_wtd core:SymmDLMin_betanov15_Tests:test_symm_DL_min_omega core:SymmDLMin_betanov15_Tests:test_symm_DL_min_p_aa_pp core:SymmDLMin_betanov15_Tests:test_symm_DL_min_pro_close core:SymmDLMin_betanov15_Tests:test_symm_DL_min_rama core:SymmDLMin_betanov15_Tests:test_symm_DL_min_rama_prepro core:SymmDLMin_betanov15_Tests:test_symm_DL_min_rama_prepro2 core:SymmDLMin_betanov15_Tests:test_symm_DL_min_yhh_planarity core:SymmDL_betanov15_Tests:test_symm_DL_beta core:SymmDL_betanov15_Tests:test_symm_DL_cart_bonded core:SymmDL_betanov15_Tests:test_symm_DL_default_scorefxn core:SymmDL_betanov15_Tests:test_symm_DL_dslf_fa13 core:SymmDL_betanov15_Tests:test_symm_DL_fa_atr core:SymmDL_betanov15_Tests:test_symm_DL_fa_dun core:SymmDL_betanov15_Tests:test_symm_DL_fa_elec core:SymmDL_betanov15_Tests:test_symm_DL_fa_intra_rep core:SymmDL_betanov15_Tests:test_symm_DL_fa_intra_sol_xover4 core:SymmDL_betanov15_Tests:test_symm_DL_fa_rep core:SymmDL_betanov15_Tests:test_symm_DL_fa_sol core:SymmDL_betanov15_Tests:test_symm_DL_hbonds core:SymmDL_betanov15_Tests:test_symm_DL_lk_ball_wtd core:SymmDL_betanov15_Tests:test_symm_DL_omega core:SymmDL_betanov15_Tests:test_symm_DL_p_aa_pp core:SymmDL_betanov15_Tests:test_symm_DL_pro_close core:SymmDL_betanov15_Tests:test_symm_DL_rama core:SymmDL_betanov15_Tests:test_symm_DL_rama_prepro core:SymmDL_betanov15_Tests:test_symm_DL_rama_prepro2 core:SymmDL_betanov15_Tests:test_symm_DL_yhh_planarity core:SymmGlyMinTests:test_single_gly_min_cart_bonded core:SymmGlyMinTests:test_symm_gly_min_cart_bonded core:SymmGlyMinTests:test_symm_gly_min_default_scorefxn core:SymmGlyMinTests:test_symm_gly_min_fa_atr core:SymmGlyMinTests:test_symm_gly_min_fa_dun core:SymmGlyMinTests:test_symm_gly_min_fa_elec core:SymmGlyMinTests:test_symm_gly_min_fa_intra_rep core:SymmGlyMinTests:test_symm_gly_min_fa_rep core:SymmGlyMinTests:test_symm_gly_min_fa_sol core:SymmGlyMinTests:test_symm_gly_min_hbonds core:SymmGlyMinTests:test_symm_gly_min_omega core:SymmGlyMinTests:test_symm_gly_min_p_aa_pp core:SymmGlyMinTests:test_symm_gly_min_rama core:SymmGlyMinTests:test_symm_gly_min_rama_prepro core:SymmGlyMinTests:test_symm_gly_min_talaris2014 core:SymmGlyMinTests:test_symm_gly_min_talaris2014_cart core:SymmGlyMinTests:test_two_gly_min_cart_bonded core:SymmGlyMin_betanov15_Tests:test_single_gly_min_cart_bonded core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_beta_nov15 core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_beta_nov15_cart core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_cart_bonded core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_default_scorefxn core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_atr core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_dun core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_elec core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_intra_rep core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_intra_sol_xover4 core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_rep core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_sol core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_hbonds core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_lk_ball_wtd core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_omega core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_p_aa_pp core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_rama core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_rama_prepro core:SymmGlyMin_betanov15_Tests:test_two_gly_min_cart_bonded core:SymmGlyTests:test_symm_gly_cart_bonded core:SymmGlyTests:test_symm_gly_default_scorefxn core:SymmGlyTests:test_symm_gly_fa_atr core:SymmGlyTests:test_symm_gly_fa_dun core:SymmGlyTests:test_symm_gly_fa_elec core:SymmGlyTests:test_symm_gly_fa_intra_rep core:SymmGlyTests:test_symm_gly_fa_rep core:SymmGlyTests:test_symm_gly_fa_sol core:SymmGlyTests:test_symm_gly_hbonds core:SymmGlyTests:test_symm_gly_omega core:SymmGlyTests:test_symm_gly_p_aa_pp core:SymmGlyTests:test_symm_gly_rama core:SymmGlyTests:test_symm_gly_rama_prepro core:SymmGlyTests:test_symm_gly_talaris2014 core:SymmGly_betanov15_Tests:test_symm_gly_beta_nov15 core:SymmGly_betanov15_Tests:test_symm_gly_cart_bonded core:SymmGly_betanov15_Tests:test_symm_gly_default_scorefxn core:SymmGly_betanov15_Tests:test_symm_gly_fa_atr core:SymmGly_betanov15_Tests:test_symm_gly_fa_dun core:SymmGly_betanov15_Tests:test_symm_gly_fa_elec core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_rep core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_sol_xover4 core:SymmGly_betanov15_Tests:test_symm_gly_fa_rep core:SymmGly_betanov15_Tests:test_symm_gly_fa_sol core:SymmGly_betanov15_Tests:test_symm_gly_hbonds core:SymmGly_betanov15_Tests:test_symm_gly_lk_ball_wtd core:SymmGly_betanov15_Tests:test_symm_gly_omega core:SymmGly_betanov15_Tests:test_symm_gly_p_aa_pp core:SymmGly_betanov15_Tests:test_symm_gly_rama core:SymmGly_betanov15_Tests:test_symm_gly_rama_prepro core:SymmetricMinimizerTests:test_fibril_symm_score core:SymmetricScoreTest:test_SymmetricScoreTest core:Symmetric_Binary_Protein_Silent_File_Tests:test_save_and_restore core:VirtualResidueScoreTest:test_centroid_vrt_scores core:VirtualResidueScoreTest:test_fa_vrt_scores protocols:AntibodySeqDesign:test_graft_tf_generation1 protocols:AntibodySeqDesign:test_graft_tf_generation2 protocols:AntibodySeqDesign:test_normal_tf_generation protocols:AntibodySeqDesign:test_task_ops protocols:AntibodySeqDesign:test_utility_functions protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command_missing_commas protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command_missing_equals_sign protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command_missing_right_curly_brace protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_AA_SET protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_AA_SET_bad_name protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_aa_list protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_aa_list_missing_comma protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_aa_list_missing_lcurly protocols:DynamicAggregateFunctionTests:test_EntityFunc_SUB_EXPRESSION_command protocols:DynamicAggregateFunctionTests:test_EntityFunc_read_simple_file protocols:DynamicAggregateFunctionTests:test_daf_POSE_ENERGY_command protocols:DynamicAggregateFunctionTests:test_daf_POSE_ENERGY_into_VECTOR_VARIABLE_command protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_duplicate_varname protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_function_varname protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_illegal_varname protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_listfile protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_listfile2 protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_varname protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_varname2 protocols:DynamicAggregateFunctionTests:test_daf_STATE_command protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_correspondence_file protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_correspondence_file2 protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_pdb_file protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_pdb_file2 protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_secondary_resfile protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_secondary_resfile2 protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_varname_duplicated protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_varname_function_name protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_varname_illegal_name protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_duplicated_local_varname protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_nocap_IN protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_two_local_variables protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_two_local_variables_misplaced_comma protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command_bad_varname protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command_bad_vecvarname protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command_func_vecvarname protocols:DynamicAggregateFunctionTests:test_daf_mean_of_vector_variable_command protocols:DynamicAggregateFunctionTests:test_daf_scalar_NPD_PROPERTY_command protocols:DynamicAggregateFunctionTests:test_daf_vector_NPD_PROPERTY_command protocols:DynamicAggregateFunctionTests:test_initialize_empty_DAF protocols:GenerateMainchainPotentialTests:test_full_run_ALA protocols:GenerateMainchainPotentialTests:test_full_run_B3N protocols:GenerateMainchainPotentialTests:test_full_run_GLY_asymm protocols:GenerateMainchainPotentialTests:test_full_run_GLY_symm protocols:GenerateMainchainPotentialTests:test_full_run_VAL protocols:GenerateMainchainPotentialTests:test_full_run_VAL_prepro protocols:GenerateMainchainPotentialTests:test_pose_generation protocols:GenerateMainchainPotentialTests:test_pose_generation_prepro protocols:InterfaceFeaturesTests:test_reporter protocols:InvrotTreeTest:test_invrot_tree protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:OptimizeMembranePositionMoverTest:test_default_constructor protocols:OptimizeMembranePositionMoverTest:test_parse_my_tag_input protocols:RotamerRecoveryTests:test_RotamerRecovery_main protocols:SimpleMetricProtocolsTests:test_composite_real_metric protocols:SimpleMetricProtocolsTests:test_composite_string_metric protocols:SimpleMetricProtocolsTests:test_composite_total_energy_metric protocols:SimpleMetricProtocolsTests:test_dihedral_metric protocols:SimpleMetricProtocolsTests:test_protocol_settings_metric protocols:SimpleMetricProtocolsTests:test_real_metric protocols:SimpleMetricProtocolsTests:test_rmsd_metric protocols:SimpleMetricProtocolsTests:test_string_metric protocols:SimpleMetricProtocolsTests:test_total_energy_metric


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