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branch: commits 「№14540」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№4450」
Merge: 「85a205900」「67c5c57ea」  code diff
Scheduled at: 2020-01-20 16:36:41.116627
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4450 master←roccomoretti/clang_tidy_4 Merge: 85a205900572b8933103a2a2208cf3ddf086c502←67c5c57ea863bb3d2ca596a23f41025a34dad790 Clang tidy: modernize-use-nullptr ---------------- Merge commit message: Update fixedsizearray0 to be parallel to the fixedsizearray1 definition.

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branch: commits 「№14539」
Commited by: teunhoevenaars
GitHub Pull Request link: 「№4366」
Merge: 「85a205900」「8ef7f5533」  code diff
Scheduled at: 2020-01-20 06:05:55.087680
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4366 master←teunhoevenaars/jacobi_loop_closure_1 Merge: 85a205900572b8933103a2a2208cf3ddf086c502←8ef7f5533b2b82a2f7b13c5e6431409b3414f465 Teunhoevenaars/jacobi loop closure 1 ---------------- Merge commit message: make assigment of memeber variables in JacobianStructure consistent with other classes

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Test: mac.clang.integration

Failed sub-tests (click for more details):
auto-drrafter_setup_run_R1 drrafter_setup_simple
Test: linux.clang.performance

Failed sub-tests (click for more details):
core_scoring_Score_100x_neigh_vect


branch: commits 「№14538」
Commited by: teunhoevenaars
GitHub Pull Request link: 「№4366」
Merge: 「85a205900」「38d1371a7」  code diff
Scheduled at: 2020-01-20 05:44:55.586577
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4366 master←teunhoevenaars/jacobi_loop_closure_1 Merge: 85a205900572b8933103a2a2208cf3ddf086c502←38d1371a7fa640c754a39fafac6acc54c01c96df Teunhoevenaars/jacobi loop closure 1 ---------------- Merge commit message: explanation added to absence of default constructor for Jacobian classes

Rosetta Benchmark 15 hours
Tests for this revision was automatically canceled because newer set of tests for pull-request №4366 was submitted!


branch: commits 「№14537」
Commited by: teunhoevenaars
GitHub Pull Request link: 「№4366」
Merge: 「85a205900」「319c78fa0」  code diff
Scheduled at: 2020-01-20 05:02:07.430099
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4366 master←teunhoevenaars/jacobi_loop_closure_1 Merge: 85a205900572b8933103a2a2208cf3ddf086c502←319c78fa07dd8dbc51dc66760c9afcbcaba8b925 Teunhoevenaars/jacobi loop closure 1 ---------------- Merge commit message: beautification

Rosetta Benchmark 16 hours
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branch: commits 「№14536」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4437」
Merge: 「1e500989d」「6ed104584」  code diff
Scheduled at: 2020-01-18 19:50:34.569263
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release gcc-9.gcc.unit util.apps

Pull Request №4437 vmullig/multithreaded_scoring2←vmullig/multithreaded_scoring12 Merge: 1e500989d0b102df280245b7eb62aa65a4742517←6ed104584dde0fdb6c6d3887ce2ac159f21a2d2b Increase size of work units for multithreaded scoring ---------------- Merge commit message: Merge vmullig/multithreaded_scoring2 into vmullig/multithreaded_scoring12 for final testing of the latter.

Rosetta Benchmark 2 days
Tests for this revision was automatically canceled due to critical failure of test: linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit
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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AnchoredDesign AnchoredPDBCreator ContactMolecularSurface DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FilterReportAsPoseExtraScoresMover FloppyTail InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer LoopLengthChange ModifyVariantTypeMover RBOut ReadResfile_with_selector ResidueDisorder SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_constraints_to_current_conformation add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autosetup_metals_centroid backbonegridsampler_multiresidue backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation binselector binselector_probins broker bundlegridsampler bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_z0_offset bundlegridsampler_z1_offset buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification centroid_from_fullatom classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers constel coupled_moves create_clash-based_repack_shell create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints drrafter_run duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution extract_atomtree_diffs farfar_mrna farnesyl fast_relax favor_native_residue features features_database_schema features_parallel features_pdb fiber_diffraction fiber_diffraction_fad fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_cst_new fold_from_loops fuzzy ga_ligand_dock gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hts_io hybridization hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jscore kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_symmdef_file match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mirror_symm mmtfIO_score_test motif_dna_packer_design motif_score_filter mp_dock mp_find_interface mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_span_ang_ref2015_memb mp_symdock mp_symmetry_load mpi_multistate_design mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering multithreaded_fastdesign mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities nonideal_rtmin nucleobase_sample_around oligourea_design oligourea_predict oop_design orbitals peptiderive per_residue_energies pertmin perturb_helical_bundle phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif range_relax_w_cst rb_recces readin_dna_rna_protein real_virt_mover recces_turner recon_design relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator rna_assemble rna_assemble_legacy rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_base_pair_setup_legacy rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_bps_helix_ends_legacy rna_denovo_bps_legacy rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_grid_vdw_legacy rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_minimize rna_motif rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sasa_metric_options score12_docking score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI selected_residue_count_metric sequence_recovery set_torsion shobuns simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset struc_set_fragment_picker supercharge surface_docking swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource task_selector tcrmodel test1_benchmark test_energy_method_options thermal_sampler threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling vancomycin voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
Test: mac.clang.integration

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AnchoredDesign AnchoredPDBCreator ContactMolecularSurface DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FilterReportAsPoseExtraScoresMover FloppyTail InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer LoopLengthChange ModifyVariantTypeMover RBOut ReadResfile_with_selector ResidueDisorder SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_constraints_to_current_conformation add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autosetup_metals_centroid backbonegridsampler_multiresidue backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation binselector binselector_probins bridge_chains broker bundlegridsampler bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_z0_offset bundlegridsampler_z1_offset buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification centroid_from_fullatom classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers constel coupled_moves create_clash-based_repack_shell create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints drrafter_run duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution extract_atomtree_diffs farfar_mrna farnesyl fast_relax favor_native_residue features features_database_schema features_parallel features_pdb fiber_diffraction fiber_diffraction_fad fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_cst_new fold_from_loops fuzzy ga_ligand_dock gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hts_io hybridization hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design inverse_rotamer_remodel jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jscore kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_symmdef_file match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mirror_symm mmtfIO_score_test motif_dna_packer_design motif_score_filter mp_dock mp_find_interface mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_relax_w_ligand mp_span_ang_ref2015_memb mp_symdock mp_symmetry_load mpi_multistate_design mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering multithreaded_fastdesign mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities nonideal_rtmin nucleobase_sample_around oligourea_design oligourea_predict oop_design orbitals pepspec peptiderive per_residue_energies pertmin perturb_helical_bundle phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif range_relax_w_cst rb_recces readin_dna_rna_protein real_virt_mover recces_turner recon_design relax_w_allatom_cst remodel remodel_disulfides remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator rna_assemble rna_assemble_legacy rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_base_pair_setup_legacy rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_bps_helix_ends_legacy rna_denovo_bps_legacy rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_grid_vdw_legacy rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_minimize rna_motif rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sasa_metric_options score12_docking score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI selected_residue_count_metric sequence_recovery set_torsion shobuns simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset struc_set_fragment_picker supercharge surface_docking swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource task_selector tcrmodel test1_benchmark test_energy_method_options thermal_sampler threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling vancomycin voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
Test: linux.clang.performance

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branch: commits 「№14535」
Commited by: Vikram K. Mulligan
GitHub commit link: 「9c2e2d50289580e5」 「№4453」
Commit date: 2020-01-18 01:36:53
integration.demos integration.tutorials

Merge pull request #4453 from RosettaCommons/vmullig/fix_andy_genkic_bug Turn a segfault into an informative error message. Andy identified a crash bug in a GeneralizedKIC perturber. I'm turning this into an informative error message.



branch: commits 「№14534」
Commited by: Jack Maguire
GitHub Pull Request link: 「№4125」
Merge: 「9c2e2d502」「ec0e39670」  code diff
Scheduled at: 2020-01-18 09:23:23.673700
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit

Pull Request №4125 master←JackMaguire/MLCen Merge: 9c2e2d50289580e523ae948312e9c3496e485676←ec0e39670ba4d9799277ce45254430ea1791ada6 MOUSE: Model Of Ultimate Surface Energy ---------------- Merge commit message: tests are failing

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branch: commits 「№14533」
Commited by: Vikram K. Mulligan
GitHub commit link: 「82fd5b6291d642fb」
Commit date: 2020-01-18 06:50:31
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static linux.ui mac.ui beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Fixed likely problem with symmetric scoring.

Vikram K. Mulligan 3 days
This is vmullig/multithreaded_scoring12.
Rosetta Benchmark 3 days
Tests for this revision was automatically canceled due to critical failure of test: linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit
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Test: linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AnchoredDesign AnchoredPDBCreator ContactMolecularSurface DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FilterReportAsPoseExtraScoresMover FloppyTail InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer LoopLengthChange ModifyVariantTypeMover PolarDesign2019 RBOut ReadResfile_with_selector ResidueDisorder SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_constraints_to_current_conformation add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autosetup_metals_centroid backbonegridsampler_multiresidue backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation binselector binselector_probins broker bundlegridsampler bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_z0_offset bundlegridsampler_z1_offset buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification centroid_from_fullatom classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers constel coupled_moves create_clash-based_repack_shell create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints drrafter_run duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution extract_atomtree_diffs farfar_mrna farnesyl fast_relax favor_native_residue features features_database_schema features_parallel features_pdb fiber_diffraction fiber_diffraction_fad fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_cst_new fold_from_loops fuzzy ga_ligand_dock gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hts_io hybridization hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jscore kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_symmdef_file match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mirror_symm mmtfIO_score_test motif_dna_packer_design motif_score_filter mp_dock mp_find_interface mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_span_ang_ref2015_memb mp_symdock mp_symmetry_load mpi_multistate_design mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering multithreaded_fastdesign mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities nonideal_rtmin nucleobase_sample_around oligourea_design oligourea_predict oop_design orbitals peptiderive per_residue_energies pertmin perturb_helical_bundle phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif range_relax_w_cst rb_recces readin_dna_rna_protein real_virt_mover recces_turner recon_design relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator rna_assemble rna_assemble_legacy rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_base_pair_setup_legacy rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_bps_helix_ends_legacy rna_denovo_bps_legacy rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_grid_vdw_legacy rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_minimize rna_motif rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sasa_metric_options score12_docking score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI selected_residue_count_metric sequence_recovery set_torsion shobuns simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset struc_set_fragment_picker supercharge surface_docking swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource task_selector tcrmodel test1_benchmark test_energy_method_options thermal_sampler threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling vancomycin voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
Test: linux.clang.performance

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branch: commits 「№14532」
Commited by: Frank DiMaio
GitHub Pull Request link: 「№4454」
Merge: 「9c2e2d502」「887825d86」  code diff
Scheduled at: 2020-01-17 21:20:01.668656
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit

Pull Request №4454 master←dimaio/fiber_symmgen Merge: 9c2e2d50289580e523ae948312e9c3496e485676←887825d86c5fafdc76d5d87bf19c3247b8471b1c Dimaio/fiber symmgen ---------------- Merge commit message: Revert pilot_apps.src.settings.all

...


branch: commits 「№14531」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№4445」
Merge: 「22df80e64」「53ba3be8b」  code diff
Scheduled at: 2020-01-17 19:00:45.984107
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4445 master←roccomoretti/packer_palette_restype_tests Merge: 22df80e64c08dca82a33cface2270911f1e3ecf2←53ba3be8b088d234e52695ff557e62f7c3ac2f3b Delay ResidueTypeSet usage in PackerPalettes ---------------- Merge commit message: Switch the two-lock approach to a paired approach, which should avoid possible deadlock issues.



branch: commits 「№14530」
Commited by: Henry Solberg
GitHub Pull Request link: 「№4448」
Merge: 「22df80e64」「e950c6ef9」  code diff
Scheduled at: 2020-01-17 17:09:02.871336
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4448 master←solberg/minirosetta_windows Merge: 22df80e64c08dca82a33cface2270911f1e3ecf2←e950c6ef9140150b2761c9078785d938af6baad8 Solberg/minirosetta windows ---------------- Merge commit message: use is_directory we already wrote



branch: commits 「№14529」
Commited by: Henry Solberg
GitHub Pull Request link: 「№4448」
Merge: 「22df80e64」「2f9b24e0b」  code diff
Scheduled at: 2020-01-17 16:28:09.743506
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4448 master←solberg/minirosetta_windows Merge: 22df80e64c08dca82a33cface2270911f1e3ecf2←2f9b24e0b12ab028da0744ed4c7467c8d041870c Solberg/minirosetta windows ---------------- Merge commit message: remove extra using error/warning lines

Rosetta Benchmark 3 days
Tests for this revision was automatically canceled because newer set of tests for pull-request №4448 was submitted!
...


branch: commits 「№14528」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4453」
Merge: 「d96aa1311」「3ec88d59d」  code diff
Scheduled at: 2020-01-17 16:17:39.224743
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4453 master←vmullig/fix_andy_genkic_bug Merge: d96aa1311025ed6a88d6ef92bf9c7aa56d5df4dc←3ec88d59dee271ba5e801abd842346220a0d899d Turn a segfault into an informative error message ---------------- Merge commit message: Merge latest master into branch.

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Test: linux.clang.performance

Failed sub-tests (click for more details):
protocols_ligand_docking_LigandDockProtocol


branch: commits 「№14527」
Commited by: Henry Solberg
GitHub Pull Request link: 「№4448」
Merge: 「22df80e64」「e7b069b0b」  code diff
Scheduled at: 2020-01-17 15:27:34.492325
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4448 master←solberg/minirosetta_windows Merge: 22df80e64c08dca82a33cface2270911f1e3ecf2←e7b069b0baf3911a42ca4943e96224eed4e6aae4 Solberg/minirosetta windows ---------------- Merge commit message: 1 problem w tests- DockingEnsemble.cc- attempt to fix

Rosetta Benchmark 3 days
Tests for this revision was automatically canceled because newer set of tests for pull-request №4448 was submitted!
...


branch: commits 「№14526」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№4450」
Merge: 「85a205900」「8b059365e」  code diff
Scheduled at: 2020-01-17 14:56:28.360482
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Pull Request №4450 master←roccomoretti/clang_tidy_4 Merge: 85a205900572b8933103a2a2208cf3ddf086c502←8b059365e521d9e8f925cf4ddaab21bcb6f3e719 Clang tidy: modernize-use-nullptr ---------------- Merge commit message: Attempt to fix a compiler segfault by changing fixedsizearray1 to use std::array

...
Test: linux.clang.unit

Failed sub-tests (click for more details):
core:BetaNov16WithAutoSetupMetalsTests:test_auto_setup_metals_with_ser_mn core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_omega core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_rama core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_rama core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_omega core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama_prepro core:LK_BallEnergyTests:test_lk_ball_bridge_rpe_matches_bbbb_bbsc_scscE core:LK_BallEnergyTests:test_lk_ball_rpe_matches_bbbb_bbsc_scscE core:LK_BallEnergyTests:test_lk_ball_setup_for_scoring core:LK_BallEnergyTests:test_lkball_numeric_deriv_check core:LK_BallEnergyTests:test_nblist_auto_update_derivatives_w_full_bb_flex core:LK_BallEnergyTests:test_nblist_auto_update_derivatives_w_partial_bb_flex core:LK_BallEnergyTests:test_start_func_matches_start_score_w_full_bbflex core:LK_BallEnergyTests:test_start_func_matches_start_score_w_partial_bbflex core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_beta_sfxn core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_cart_bonded core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_current_default_scorefxn core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_dslf_fa13 core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_atr core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_dun core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_elec core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_intra_rep core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4 core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_rep core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_sol core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_hbonds core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_lk_ball_wtd core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_omega core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_p_aa_pp core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_pro_close core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama_prepro core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama_prepro2 core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_yhh_planarity core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_beta_sfxn core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_cart_bonded core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_current_default_scorefxn core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_dslf_fa13 core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_atr core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_dun core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_elec core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_rep core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4 core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_rep core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_sol core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_hbonds core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_lk_ball_wtd core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_omega core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_p_aa_pp core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_pro_close core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro2 core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_yhh_planarity protocols:AchiralResidueTypeTests_betanov16:test_import_AIB protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_AIB protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_AIB_before_proline protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_GLY protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_GLY_before_proline protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_sarcosine protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_sarcosine_before_proline protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_AIB protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_AIB_before_proline protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_GLY protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_GLY_before_proline protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_sarcosine protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_sarcosine_before_proline protocols:NMethylationTests_betanov16:test_linear_nmethyl_peptide protocols:OversaturatedHbondAcceptorFilter_betanov16_Tests:test_bb_bb_extra_hbond
Test: linux.gcc.cxx11thread.serialization.unit

Failed sub-tests (click for more details):
core:BetaNov16WithAutoSetupMetalsTests:test_auto_setup_metals_with_ser_mn core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov16_Tests:test_cyclic_per