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branch: rosetta:commits 「№20337」
Commited by: tydingcw
GitHub Pull Request link: 「№24」
Merge: 「717d2e823」「02fcf5a22」  code diff
Scheduled at: 2024-02-28 14:47:14.652815
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №24 RosettaCommons/rosetta/main ← tydingcw/rosetta/crosslinkmover_lanthionine Merge: 717d2e8232174371f0c672564f23a097062db88a←02fcf5a228d92476888c10023b55fa8d2d43dfd0 Crosslinker Mover lanthionine ---------------- Merge commit message: beautifier

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Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5
Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5


branch: rosetta:commits 「№20336」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」「e09da1523」  code diff
Scheduled at: 2024-02-25 14:20:51.881543
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python312.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python38.PyRosetta.unit linux.clang.cxx11thread.serialization.python39.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit util.apps windows.build.debug windows.build.release

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←e09da15232da4d908b96ec6f8c328a46308556ff Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Fix docstrings and error messages



branch: rosetta:commits 「№20335」
Commited by: tydingcw
GitHub Pull Request link: 「№24」
Merge: 「717d2e823」「4081b0e20」  code diff
Scheduled at: 2024-02-25 11:41:17.697765
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №24 RosettaCommons/rosetta/main ← tydingcw/rosetta/crosslinkmover_lanthionine Merge: 717d2e8232174371f0c672564f23a097062db88a←4081b0e20342da76c87efd8c04ef162a26132ee0 Crosslinker Mover lanthionine ---------------- Merge commit message: fixing terminal AA amgibuouos constraints and simple cycy pep predict thioether making only cis peptide bonds at N terminus

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Test: linux.gcc.code_quality.beautification

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Test: linux.clang.tensorflow.integration.tensorflow

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Test: linux.gcc.cxx11thread.integration.thread

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database_md5
Test: linux.clang.profile

Failed sub-tests (click for more details):
abinitio build_rotamers relax_native


branch: rosetta:commits 「№20334」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」「1c25cd284」  code diff
Scheduled at: 2024-02-24 20:48:40.099021
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python312.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python38.PyRosetta.unit linux.clang.cxx11thread.serialization.python39.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit util.apps windows.build.debug windows.build.release

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←1c25cd28448e86e7c056146667ab70b3ad61167f Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Fix docstring

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features
Test: linux.clang.profile

Failed sub-tests (click for more details):
fixbb jd2test relax_native


branch: rosetta:commits 「№20333」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」「fd7293ab8」  code diff
Scheduled at: 2024-02-24 17:18:33.674258
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit util.apps windows.build.debug windows.build.release

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←fd7293ab8baca64eedbd4003d2944ac222c8d977 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Test closing cluster



branch: rosetta:commits 「№20332」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」「6fa4dce94」  code diff
Scheduled at: 2024-02-24 16:51:11.761911
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit util.apps windows.build.debug windows.build.release

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←6fa4dce940774a6acc648b9acd8c0b76cdc5c780 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Refactor class attribute for testing

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
features


branch: rosetta:commits 「№20331」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」「5c638b41f」  code diff
Scheduled at: 2024-02-24 15:28:23.987507
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit util.apps windows.build.debug windows.build.release

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←5c638b41f95cb57c02c33f2b15e8ec13454fb720 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Validate min len 1



branch: rosetta:commits 「№20330」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」「5d167d977」  code diff
Scheduled at: 2024-02-24 15:23:45.512239
PyRosetta.unit

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←5d167d9778e667044e9d6868b60a4975bed696a5 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Validate min len for clients attribute for earlier versions of attrs

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branch: rosetta:commits 「№20329」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№21」
Merge: 「801ac8afe」「46f6ce801」  code diff
Scheduled at: 2024-02-23 12:11:12.738960
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit linux.clang.cxx11thread.serialization.python37.PyRosetta.unit linux.clang.python310.PyRosetta.unit linux.gcc.python312.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile release.PyRosetta.conda.Release linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit util.apps windows.build.debug windows.build.release

Pull Request №21 RosettaCommons/rosetta/main ← klimaj/rosetta/clients Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←46f6ce801e0da4180888ca617a928a99907bd366 Support multiple clients and resource constraints in PyRosettaCluster ---------------- Merge commit message: Update typing



branch: rosetta:commits 「№20328」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№22」
Merge: 「801ac8afe」「49bbd52b5」  code diff
Scheduled at: 2024-02-20 12:30:21.873098
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №22 RosettaCommons/rosetta/main ← roccomoretti/rosetta/cart_bonded_upper_fix Merge: 801ac8afed6e34aa04ae902e835779872ed64f3b←49bbd52b5e4e55f47c1796a923aa4c9ddf173bc1 Fix issue with CartesianBondedEnergy. ---------------- Merge commit message: Fix issue with CartesianBondedEnergy. Calling rsd1.upper_connect() is not well formed if the residue is not an upper connection. CartesianBondedEnergy makes the assumption that if you're not an upper terminus, you have an upper connect. This isn't always the case with more esoteric residues. But if we combine with the is-protein check that is being done anyway, we can avoid the majority of the cases where this may be a problem.



branch: rosetta:commits 「№20327」
Commited by: tydingcw
GitHub Pull Request link: 「№13」
Merge: 「a56f3bb97」「cf7db5922」  code diff
Scheduled at: 2024-02-15 12:59:50.532380
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №13 RosettaCommons/rosetta/main ← tydingcw/rosetta/b_factor_simple_metric Merge: a56f3bb97396edf2ddf8f4510ea54b017d3a3e00←cf7db5922e156a811384f828860ebd6bec02b136 B factor simple metric ---------------- Merge commit message: ran beautifier



branch: rosetta:commits 「№20326」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№19」
Merge: 「16590e3c1」「08193060c」  code diff
Scheduled at: 2024-02-13 23:43:13.301503
linux.clang.cxx11thread.serialization.python310.release.PyRosetta.conda.Release m1.clang.cxx11thread.serialization.python310.release.PyRosetta.conda.Release mac.clang.cxx11thread.serialization.python311.release.PyRosetta.conda.Release

Pull Request №19 RosettaCommons/rosetta/main ← lyskov/rosetta/main Merge: 16590e3c17c8caf165ec5828333b2d229cd190e9←08193060cd7160be87937a3724564fade5ea3ef5 regenerate Conda index only on non-Mac platforms ---------------- Merge commit message: regenerate Conda index only on non-Mac platforms

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branch: rosetta:commits 「№20325」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№18」
Merge: 「8d112bda2」「3c5e08493」  code diff
Scheduled at: 2024-02-10 20:39:59.187573
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit linux.clang.bcl.build.debug linux.gcc.bcl.build.debug mac.clang.bcl.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug linux.clang.bcl.static.build.release linux.gcc.bcl.static.build.release mac.clang.bcl.static.build.release integration.bcl

Pull Request №18 RosettaCommons/rosetta/main ← roccomoretti/rosetta/fix_bcl_clang Merge: 8d112bda21a9ca7de12417818d676b62de3648bb←3c5e084936f3bad56656880148ce13c1288ae61e Update BCL to correct for Clang compilation ---------------- Merge commit message: Update BCL to correct for Clang compilation The update to the BCL repository resulted in issues when compiling with Clang, which royally messed with the PyRosetta builds. It looks like a small change to the BCL should be able to address this.

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Test: linux.clang.bcl.static.build.release

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branch: rosetta:commits 「№20324」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№16」
Merge: 「244726faa」「9cc8a95cb」  code diff
Scheduled at: 2024-02-08 17:53:51.220042
code_quality.submodule_regression

Pull Request №16 RosettaCommons/rosetta/main ← roccomoretti/rosetta/fix_submodule2 Merge: 244726faac3b110193e11bb2c12512deb11b5cb4←9cc8a95cb892e6eeee7ecc8c6c999de9fe6233f8 Attempt to fix the submodule_regression test ---------------- Merge commit message: Use timeout for git fetch.

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branch: rosetta:commits 「№20323」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№16」
Merge: 「244726faa」「5f525f0de」  code diff
Scheduled at: 2024-02-08 16:53:57.639386
code_quality.submodule_regression

Pull Request №16 RosettaCommons/rosetta/main ← roccomoretti/rosetta/fix_submodule2 Merge: 244726faac3b110193e11bb2c12512deb11b5cb4←5f525f0dec3376b1ea23fa0bb080e6f02164742b Attempt to fix the submodule_regression test ---------------- Merge commit message: Remove remote operations; done by test server.

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branch: rosetta:commits 「№20322」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№15」
Merge: 「a56f3bb97」「6d9c5dfea」  code diff
Scheduled at: 2024-02-08 16:29:08.500256
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit linux.clang.bcl.build.debug linux.gcc.bcl.build.debug mpi mpi.serialization mac.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression linux.clang.bcl.python39.integration.bcl ubuntu-20.04.gcc.bcl.python39.integration.bcl ubuntu.gcc.bcl.python39.integration.bcl integration.mpi integration.pytorch integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №15 RosettaCommons/rosetta/main ← roccomoretti/rosetta/switch_to_bcl_public Merge: a56f3bb97396edf2ddf8f4510ea54b017d3a3e00←6d9c5dfea910616617ed37234a3115147014bab7 Update the BCL to use the most recent version of the public repository. ---------------- Merge commit message: Update to latest BCL, re-run & fix BCL integration to use RosettaCommons/bcl_rosetta

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Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

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Test: mac.clang.python38.PyRosetta.unit

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Test: mac.clang.bcl.build.debug

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Test: linux.clang.bcl.python39.integration.bcl

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Test: linux.gcc.mpi.serialization.integration.mpi

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replica_docking
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
bcl_fragment_mutate
Test: linux.clang.python39.scripts.pyrosetta

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