branch: rosetta:commits 「№21088」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「e5a76a2db」「a51271c2a」  code diff
Scheduled at: 2026-02-04 16:28:33.444594
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: e5a76a2dbd7e42e1271d0af460926c86e29e59d1←a51271c2af0747198e6ef3f6c42e3a6c19a14b8e Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Skip dtype conversion; add documentation that PyArrow-backed dtypes may be used by default, depending on pandas version

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branch: rosetta:commits 「№21087」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「e5a76a2db」「9e58cfdc4」  code diff
Scheduled at: 2026-02-04 00:10:47.617821
ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit.pixi ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit.pixi ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: e5a76a2dbd7e42e1271d0af460926c86e29e59d1←9e58cfdc48123249e0aa0079ec921c2489d3b2c2 Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Test re-enabling test_smoke.ScoresTest.test_secure_packages_billiard unit test

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branch: rosetta:commits 「№21086」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「e5a76a2db」「01c3cc0f6」  code diff
Scheduled at: 2026-02-03 15:36:01.572822
ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit.pixi ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit.pixi ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: e5a76a2dbd7e42e1271d0af460926c86e29e59d1←01c3cc0f6938f98955716a5957f93b68800e253d Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Debugging Benchmark server error: 'self-test.py scripts failed to delete files: outputs'



branch: rosetta:commits 「№21085」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「e5a76a2db」「32b3137b7」  code diff
Scheduled at: 2026-02-02 21:02:11.589024
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: e5a76a2dbd7e42e1271d0af460926c86e29e59d1←32b3137b756878e68a73d97295f9c7b27697df20 Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: git pull origin main



branch: rosetta:commits 「№21084」
Commited by: akshayansamy
GitHub commit link: 「1a56185c2592611d」
Difference from previous tested commit:  code diff
Commit date: 2026-01-30 19:14:27
ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Updated PARCS applications and IMMS_CCS score function (#609) This application builds on the existing PARCS (parcs_ccs_calc.cc) application and the IMMS_CCS energy term originally developed by smturzo. I extended PARCS to support multimeric protein complexes, enabling simulation of PARCS CCS data for input structures containing multiple chains. In addition, the existing IMMS_CCS energy term, which was previously limited to monomers, was generalized for complexes through the introduction of a new IMMS_ComplexCCS_Energy term. I also implemented a new CCS_IMMS_with_CryoEMEnergy score term that integrates experimental CCS data with cryo-EM information. Method: For PARCS multimer support, I introduced a boolean flag (-multimer) to the existing PARCS application. When enabled, the algorithm predicts CCS values for multimeric assemblies by reparameterizing the original CCS calculation. For the IMMS-based energy terms, I developed on the existing CCS_IMMSEnergy implementation (source/src/core/energy_methods/CCS_IMMSEnergy.cc/.hh) by adding new energy classes: * CCS_IMMSComplexEnergy, which enables CCS-based scoring for protein complexes * CCS_IMMS_with_CryoEMEnergy, which incorporates cryo-EM restraints alongside experimental CCS data Integration test: I did integration just like how it was done for monomers with additional flag. for multimer The test passed.

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branch: rosetta:commits 「№21083」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№608」
Merge: 「1a56185c2」「7c22c2482」  code diff
Scheduled at: 2026-01-31 23:01:56.081510
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №608 RosettaCommons/rosetta/main ← klimaj/rosetta/uv_project Merge: 1a56185c2592611dec4c9c75ddc9468cd2227c1f←7c22c2482bdde0c764fd815e3dd14e3b4257d087 Minor updates to uv project export machinery in PyRosettaCluster ---------------- Merge commit message: Use uv.lock file instead of exported requirements.txt

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branch: rosetta:commits 「№21082」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№611」
Merge: 「1a56185c2」「50be60436」  code diff
Scheduled at: 2026-01-31 21:43:16.787664
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №611 RosettaCommons/rosetta/main ← klimaj/rosetta/disallowed_packages Merge: 1a56185c2592611dec4c9c75ddc9468cd2227c1f←50be604361f57befadb3487787bdfcd626ffe5f3 Update SecureUnpickler disallowed packages ---------------- Merge commit message: Merge branch 'main' of github.com:klimaj/rosetta into disallowed_packages

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branch: rosetta:commits 「№21081」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「1a56185c2」「3c508bc5e」  code diff
Scheduled at: 2026-01-31 21:43:14.456720
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: 1a56185c2592611dec4c9c75ddc9468cd2227c1f←3c508bc5e2d89fdff22125c3efeb4ad0733330a6 Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Merge branch 'main' of github.com:klimaj/rosetta into secure_packages



branch: rosetta:commits 「№21080」
Commited by: akshayansamy
GitHub Pull Request link: 「№609」
Merge: 「307045a3f」「94372e897」  code diff
Scheduled at: 2026-01-28 22:20:57.467709
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №609 RosettaCommons/rosetta/main ← akshayansamy/rosetta/app_score_imms Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←94372e897bdacd8c409a52609951a64609805675 Updated PARCS applications and IMMS_CCS score function ---------------- Merge commit message: beautification 2

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Test: ubuntu.gcc.code_quality.merge_size

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branch: rosetta:commits 「№21079」
Commited by: akshayansamy
GitHub Pull Request link: 「№609」
Merge: 「307045a3f」「9c4602530」  code diff
Scheduled at: 2026-01-28 18:58:43.320724
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №609 RosettaCommons/rosetta/main ← akshayansamy/rosetta/app_score_imms Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←9c46025304ecc8a8784e1a0f4fd9d1ea89aeb0c9 Updated PARCS applications and IMMS_CCS score function ---------------- Merge commit message: Beautified

Rosetta Benchmark 1 week
Tests for this revision was automatically canceled because newer set of tests for pull-request №609 was submitted!
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Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5


branch: rosetta:commits 「№21078」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「307045a3f」「7325ee730」  code diff
Scheduled at: 2026-01-28 15:33:27.586707
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←7325ee730f01491ddf29d83201d343e7026f70cb Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Add deprecation warning and helpful KeyError message

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branch: rosetta:commits 「№21077」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「307045a3f」「3b46aec51」  code diff
Scheduled at: 2026-01-27 20:52:03.515556
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←3b46aec5160fc1fe1ed1bef0b5a02ca0b4f29aa2 Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Fix TestReproducibilityMulti and use Pose.cache._reserved

Rosetta Benchmark 2 days
Tests for this revision was automatically canceled because newer set of tests for pull-request №612 was submitted!


branch: rosetta:commits 「№21076」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№611」
Merge: 「307045a3f」「c02db39c1」  code diff
Scheduled at: 2026-01-27 16:40:49.675215
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №611 RosettaCommons/rosetta/main ← klimaj/rosetta/disallowed_packages Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←c02db39c1d9f3aaeca2d2c29b6347bc47fe62bcc Update SecureUnpickler disallowed packages ---------------- Merge commit message: Disallow concurrent, PIL packages

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branch: rosetta:commits 「№21075」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「307045a3f」「ec9873e9c」  code diff
Scheduled at: 2026-01-27 16:40:47.520528
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←ec9873e9cf9bee588dc5b7da26e085bf716b74ca Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Always run PackedPose.update_scores upon PackedPose compression, regardless of if compression is enabled

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branch: rosetta:commits 「№21074」
Commited by: Akshaya Narayanasamy
GitHub Pull Request link: 「№609」
Merge: 「307045a3f」「ac0fbf817」  code diff
Scheduled at: 2026-01-26 20:29:33.335078
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №609 RosettaCommons/rosetta/main ← akshayansamy/rosetta/app_score_imms Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←ac0fbf817c9d09b0b3a2923a9acb3f3deea5e574 Updated PARCS applications and IMMS_CCS score function ---------------- Merge commit message: Updated code after Rocco's advice

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Test: linux.gcc.code_quality.beautification

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Test: ubuntu.gcc.code_quality.merge_size

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Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
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Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5


branch: rosetta:commits 「№21073」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№612」
Merge: 「307045a3f」「6de6d0dc2」  code diff
Scheduled at: 2026-01-26 18:02:53.028324
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python314.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python314.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №612 RosettaCommons/rosetta/main ← klimaj/rosetta/secure_packages Merge: 307045a3f7fe7488f28b6c4422425c60f04a78cd←6de6d0dc2e3cda2b8fdbcf170abd281fecac337f Minor change to PackedPose.scores dictionary construction ---------------- Merge commit message: Clean up pose_result decorator originally intended to populate PackedPose.scores dictionary

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