Pull Request №428 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/ag_post_lds_quick_fix Merge: cdd8f4763dd711a4aa6b38a8552c98401fe5a0ed←80a92ffab8ebd1f800e6aa202b1560366aeb6a34 Fixing gcc errors from LigandDiscoverySearch merge ---------------- Merge commit message: Initializing bp_xyz values to avoid gcc test errors

• Summary
• linux.clang.bcl.static.build.release
• linux.gcc.bcl.static.build.release
• integration.mpi 「7」
• integration 「2」

Initializing bp_xyz values to avoid gcc test errors

• Summary

Pull Request №426 RosettaCommons/rosetta/main ← roccomoretti/rosetta/test_fixes Merge: e6f643b818cda63c8e00156a266c408faac3c3dd←65e6dc6d4806da11b8c4d2f2edba85a68ad46a3f Fixes for failing tests in main ---------------- Merge commit message: Fix rapidjson compilation issue with Clang 19.

• Summary
• code_quality.clang_tidy 「9」
• code_quality.submodule_regression
• integration.mpi 「1」
• integration.release_debug 「1」
• integration 「1」
• scientific.peptide_pnear_vs_ic50
• windows.build.debug

Pull Request №426 RosettaCommons/rosetta/main ← roccomoretti/rosetta/test_fixes Merge: e6f643b818cda63c8e00156a266c408faac3c3dd←1f90f96a704024648b3faf4c9b3b81d7a2633ba4 Fixes for failing tests in main ---------------- Merge commit message: Attempt to make output parsing in peptide_pnear_vs_ic50 scientific test more robust.

• Summary
• code_quality.submodule_regression
• integration.release_debug 「1」
• integration 「2」

Pull Request №425 RosettaCommons/rosetta/main ← agmuenks/rosetta/ligand_density_id Merge: e6f643b818cda63c8e00156a266c408faac3c3dd←74c81dea014ce3f0afa9067af7917db691b35b6a Updates to cryoEM ligand identification in GALigandDock ---------------- Merge commit message: merged with updated rosetta/main

• Summary
• ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit
• code_quality.merge_size
• integration.mpi 「1」
• integration.release_debug 「1」
• integration 「2」

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 1354d05daa4c339d591afeecef3c94ca2d38680e←f3323403a22b3ea80e32370a95e789f1ec047c8d Updated Ligand Motifs Code ---------------- Merge commit message: beautifying changed proteingrid.cc

• Summary
• ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit
• code_quality.merge_size
• integration.mpi 「24」
• integration.release_debug 「6」
• integration 「5」

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 1354d05daa4c339d591afeecef3c94ca2d38680e←d75bfce4a3051e4f7764df57653c485d95e3b8f8 Updated Ligand Motifs Code ---------------- Merge commit message: removing clone function, but keeping as a comment in case a clone function may be needed for the object in the future. The commented code can be a start

• Summary
• beautification

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 1354d05daa4c339d591afeecef3c94ca2d38680e←e83e7a1af964092c39db50927b126135fe8822fd Updated Ligand Motifs Code ---------------- Merge commit message: Merge branch 'main' into updated_ligand_discovery_search_code_ag_may_2024

• Summary
• ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit
• code_quality.merge_size
• integration.mpi 「23」
• integration.release_debug 「6」
• integration 「6」
• linux.clang.python312.scripts.pyrosetta

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 74f819c4dd58142810833fb8e63211f2974ee342←c2adab8ca670811ec2a966e91719790c94116d0b Updated Ligand Motifs Code ---------------- Merge commit message: removing "other" variable from copy ctor and = overload when used for default so that it doesn't go unused

• Summary
• code_quality.merge_size
• integration.mpi 「24」
• integration.release_debug 「0」
• integration.tensorflow 「0」
• integration.thread 「0」
• integration.torch
• integration 「0」
• performance 「0」
• profile 「0」
• linux.clang.score 「0」
• linux.gcc.score 「0」
• mac.clang.score 「0」

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 74f819c4dd58142810833fb8e63211f2974ee342←be034f1942d400f88b56e47ac5b6d3473741c951 Updated Ligand Motifs Code ---------------- Merge commit message: ran beautifier on these files

• Summary
• linux.gcc.build.debug
• build.ninja_debug

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 74f819c4dd58142810833fb8e63211f2974ee342←8f1743db5c8ab3635f4a1ed2a3c33c7e05bba56e Updated Ligand Motifs Code ---------------- Merge commit message: removing default definitions from cc file and defining as default in hh

• Summary
• linux.gcc.cxx11thread.serialization.build.debug
• build.ninja_debug
• integration.release_debug 「0」

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 74f819c4dd58142810833fb8e63211f2974ee342←f356c14b5ae8d24d4a4aaa6b442592f101dd7ed0 Updated Ligand Motifs Code ---------------- Merge commit message: removing extraneous parentheses

• Summary
• ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit
• linux.clang.build.debug
• linux.gcc.build.debug
• linux.gcc.cxx11thread.serialization.build.debug
• mpi
• mpi.serialization
• build.ninja_debug
• beautification
• code_quality.merge_size
• integration.mpi 「23」
• integration.release_debug 「0」
• integration.thread
• integration.torch
• integration 「0」
• performance 「0」
• profile 「0」
• linux.clang.score 「0」
• linux.gcc.score 「0」
• mac.clang.score 「0」
• linux.clang.unit
• linux.gcc.cxx11thread.serialization.unit
• linux.gcc.unit

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 74f819c4dd58142810833fb8e63211f2974ee342←c353b98484b7c577040abc13d48084d6f2428da8 Updated Ligand Motifs Code ---------------- Merge commit message: adjusting the copy constructor and = overload to just be the default

• Summary
• linux.clang.build.debug
• linux.gcc.cxx11thread.serialization.build.debug
• build.ninja_debug
• linux.clang.build.release
• integration.release_debug
• linux.clang.score
• linux.clang.unit
• linux.gcc.cxx11thread.serialization.unit

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 74f819c4dd58142810833fb8e63211f2974ee342←3b323a7f654b6ad1d34922bb70528df38196333e Updated Ligand Motifs Code ---------------- Merge commit message: fixing copy constructor so clone order is correct

• Summary
• integration.release_debug 「0」
• performance 「0」
• profile 「0」
• linux.clang.score 「0」

Pull Request №419 RosettaCommons/rosetta/main ← roccomoretti/rosetta/foldamers Merge: 1354d05daa4c339d591afeecef3c94ca2d38680e←4ff68b2722f247cde7e113cf5278cadbf23afc8e Updates to molfile_to_params_polymer.py to better accomodate non-alpha residues. ---------------- Merge commit message: Merge remote-tracking branch 'origin/main' into foldamers

• Summary
• integration.release_debug 「2」
• integration 「5」

Pull Request №59 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/updated_ligand_discovery_search_code_ag_may_2024 Merge: 74f819c4dd58142810833fb8e63211f2974ee342←0fe93257f003a778af9fc2ae860462cbb9737b8b Updated Ligand Motifs Code ---------------- Merge commit message: fixing weirdly-placed curly bracket and removing blank definition of default constructor, since it is not necessary

• Summary
• beautification
• code_quality.merge_size
• integration.mpi 「23」
• integration.release_debug 「0」
• integration.tensorflow 「0」
• integration.thread 「0」
• integration.torch
• integration 「0」
• performance 「0」
• profile 「0」
• linux.clang.score 「0」
• linux.gcc.score 「0」
• mac.clang.score 「0」

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