Pushed Revisions

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←794cea1a0db40e95f16e4da78a2c0686c871e536 Split T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Terminating process tree

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←866588fc2836af605ba50ead3f8543e3a27ee908 Generate type stubs when building packages ---------------- Merge commit message: Increase test timeout for non-Debug builds

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←f5ae7fef8d766f521e37095a7953ed0c485d81fd Generate type stubs when building packages ---------------- Merge commit message: Adjust test timeout for release configuration

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←844b713c251c3d5b456cc81884b848fe607795d8 Split T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Clean up process groups

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←a307f28c29bc1a29a30ff4e23116de379887e988 Split T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Adding unit test standard output streaming with early timeout

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←91605dd8d2c9e00324cf235708f02e0f239f74d6 Split T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Clean up unit test subprocesses

Pull Request №636 RosettaCommons/rosetta/main ← klimaj/rosetta/unittests Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←7c23878e947a54dd2dea08025b6873d3e50977bf Test splitting T900_distributed.py module into separate sub-tests ---------------- Merge commit message: Testing scorefunction transition through intermediate PDB format serialization

branch: rosetta:commits 「№21129」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№638」
Merge: 「a8f70994f」← 「141b4a5f4」 code diff
Scheduled at: 2026-03-28 17:45:15.379694

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←141b4a5f4f3f6231792459804c533d459182b29c Generate type stubs when building packages ---------------- Merge commit message: Disable type-stubs generation on Conda Python-3.8 platform

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←392d8579f4be9242d23d95c9a21d60656ec7b821 Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: Revert "Revert "New Pose per subprocess"" This reverts commit 389bfd45dac71197a4f12a65d34968c18869dff9.

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←ae1af63286476bea5f2a9a0b714aba20accff3b4 Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: Set scorefunctions in protocols

Pull Request №637 RosettaCommons/rosetta/main ← klimaj/rosetta/stress_test Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←9ab83b632292c751d5e81b7a11e0174e0d4e6ed3 Stress test subprocess concurrency on Benchmark server ---------------- Merge commit message: Merge branch 'main' of github.com:klimaj/rosetta into stress_test

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←c6037e60b06a368b2b3dfb2db76ebe9128d8c264 Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: New Pose per subprocess

Pull Request №639 RosettaCommons/rosetta/main ← klimaj/rosetta/debug_free Merge: c6e41681b1ddf46fa8309ac56c8e2241a37267bb←0cc881dc1cddff7e545e18ca83d8f5f613b283da Debugging: "free(): invalid next size (fast)" ---------------- Merge commit message: Add Pose data; enable verbose

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←24a3c1111dae46111ee0364bd6cb87599d65c2ce Generate type stubs when building packages ---------------- Merge commit message: Refresh setup.py and update Conda build procedure to generate type stubs

Update SecureUnpickler disallowed packages (#611) This PR updates the `pyrosetta.secure_unpickle.SecureUnpickler` class to block some additional callable targets via the `pickle` module, including `numpy.load` and `pandas.read_pickle` modules. Unit tests added herein demonstrate that secure `numpy`/`pandas` modules like `numpy.array` and `pandas.DataFrame` are still deserializable.

Pull Request №638 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta-type-stubs Merge: a8f70994f07ea7c4b9caae3d4370a094f348af69←04f6d2f57c302a7843a922d57d12d895add376ef Generate type stubs when building packages ---------------- Merge commit message: Generate type stubs

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queued	Queued Test
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comparing	Test results is now comparing with previous results
finished	Test is finished without errors
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script failed	Test results is unknow because test-script failed
canceled	Test was canceled

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