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branch: rosetta:release 「№379」
Commited by: Rocco Moretti
GitHub commit link: 「baad48240e60f121」
Difference from previous tested commit: code diff
Commit date: 2024-04-24 12:34:17

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Update benchmark scripts for Python3.12. (#51) Python 3.12 gets rid of the imp module. Moreover, it gets rid of imp.load_source() altogether. We thus need to change around how we do the magic 'import from parent directory' statement. There are also a few other things which were popping up warnings when I ran things locally.

Summary
linux.gcc.unit 「6」

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Test: linux.gcc.unit

Failed sub-tests (click for more details):
protocols:FeaturesReporterTests:test_identifier_generation protocols:FeaturesReporterTests:test_main protocols:FeaturesReporterTests:test_trajectory_report_to_db protocols:RRReporterSQLiteTests:test_RRReporterSQLite_features protocols:RRReporterSQLiteTests:test_RRReporterSQLite_full protocols:SandwichFeaturesTests:test_main

branch: rosetta:release 「№378」
Commited by: Moritz Ertelt
GitHub commit link: 「bc4dfa1b240a4138」
Difference from previous tested commit: code diff
Commit date: 2024-04-16 11:39:11

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

QOL update to the PerResidueEsmProbabilitiesMetric (#26) This short PR: * Adds the proper citation for ESM * Adds some checks for NaNs/Infs to the Perplexity/softmax calculation * fixes a typo in MIFST.cc * Prevents an error in SampleSequenceFromProbabilities when calling the SimpleThreadingMover without mutations * Fixes const behavior in SampleSequenceFromProbabilities --------- Co-authored-by: moritzertelt <moritz.ertelt@gmail.com>

Summary

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branch: rosetta:release 「№377」
Commited by: Sergey Lyskov
GitHub commit link: 「d972b59c530a12af」
Difference from previous tested commit: code diff
Commit date: 2024-04-02 19:06:29

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

fix PyRosetta build on Ubuntu-22.04 (#45)

Summary

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branch: rosetta:release 「№376」
Commited by: Sergey Lyskov
GitHub commit link: 「2ed86d439d51d2fb」
Difference from previous tested commit: code diff
Commit date: 2024-04-02 14:02:03

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

rename torch extras and defines (#43) * rename torch extras and defines * fix integration tests

Summary

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branch: rosetta:release 「№375」
Commited by: Sergey Lyskov
GitHub commit link: 「59f5585377a7bc55」
Difference from previous tested commit: code diff
Commit date: 2024-03-29 20:58:38

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

update documentation and remove deprecated scripts (#41) * Update README.md * add reference docker files * add reference Docker files readme * remove deprecated Conda setup and instructions * remove PyRosetta deprecated build option and update readme

Summary

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branch: rosetta:release 「№374」
Commited by: Steffen Möller
GitHub commit link: 「3e4fc2129edccfa8」
Difference from previous tested commit: code diff
Commit date: 2024-03-22 14:08:18

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

libxml2 build: strcasecmp needs strings.h (#39) The exact error (by clang) was that a missing declaration is no longer supported with the latest C++ standards.

Summary

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branch: rosetta:release 「№373」
Commited by: Sergey Lyskov
GitHub commit link: 「3e5ab3269c21ec96」
Difference from previous tested commit: code diff
Commit date: 2024-03-19 13:17:22

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

add support for PyRosetta ML builds (#32)

Summary
profile 「4」

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Test: linux.clang.profile

Failed sub-tests (click for more details):
AnchoredDesign docking fixbb hotspot_hashing

branch: rosetta:release 「№372」
Commited by: Rocco Moretti
GitHub commit link: 「2c36cbc7108d8564」
Difference from previous tested commit: code diff
Commit date: 2024-03-01 17:53:36

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Add Link to CLA website

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Test: linux.clang.performance

Failed sub-tests (click for more details):
basic_options_OptionCollection core_import_pose_pose_from_pdbstring core_scoring_Score instantiate_modules_filters instantiate_modules_movers instantiate_modules_packer_palettes instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors instantiate_modules_simple_metrics instantiate_modules_task_operations protocols_docking_DockingHighRes protocols_docking_DockingLowRes protocols_moves_ShearMover protocols_moves_SmallMover protocols_optimization_Minimizer_dfpmin protocols_optimization_Minimizer_dfpmin_armijo protocols_optimization_Minimizer_dfpmin_armijo_nonmonotone utility_tag_Tag_Create

Test: linux.clang.profile

Failed sub-tests (click for more details):
FloppyTail build_rotamers docking fixbb hotspot_hashing jd2test monte_carlo_hbnet relax_native

branch: rosetta:release 「№371」
Commited by: Jason C. Klima
GitHub commit link: 「06b3cf8ad0940d62」
Difference from previous tested commit: code diff
Commit date: 2024-02-26 17:38:33

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Support multiple clients and resource constraints in PyRosettaCluster (#21)

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Test: linux.clang.performance

Test: linux.clang.profile

Failed sub-tests (click for more details):
AnchoredDesign FloppyTail build_rotamers hotspot_hashing jd2test monte_carlo_hbnet relax_native

branch: rosetta:release 「№370」
Commited by: Sergey Lyskov
GitHub commit link: 「717d2e8232174371」
Difference from previous tested commit: code diff
Commit date: 2024-02-21 12:16:44

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

triggering release (#23)

Summary
performance 「2」

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Test: linux.clang.performance

Failed sub-tests (click for more details):
instantiate_modules_res_level_task_operations instantiate_modules_residue_selectors

branch: rosetta:release 「№369」
Commited by: Rocco Moretti
GitHub commit link: 「244726faac3b1101」
Difference from previous tested commit: code diff
Commit date: 2024-02-08 09:55:22

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Fix some currently broken tests. (#17) There are clang-tidy errors for ImplicitMembraneCoulomb & ImplicitMembraneElecEnergy due to virtual/override. There are running errors for the scientific tests due to a typo I made earlier.

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Test: m1.clang.cxx11thread.serialization.python310.release.PyRosetta.conda.Release

branch: rosetta:release 「№368」
Commited by: Sergey Lyskov
GitHub commit link: 「a56f3bb97396edf2」
Difference from previous tested commit: code diff
Commit date: 2024-01-28 00:26:59

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

fixing versioning script (#9)

Summary

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branch: rosetta:release 「№367」
Commited by: Rocco Moretti
GitHub commit link: 「3d702fb30f4d21ee」
Difference from previous tested commit:
Commit date: 2024-01-11 17:23:45

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Documentation Updates for the Open Repository. (#2) * Documentation Updates for the Open Repository. When we go to the open repository, we need to add additional information for public viewers, as well as update a fair amount of the current info (e.g. README). Here is the current version of those changes. More changes will likely be coming as we think of more things to change.

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Test: linux.gcc.static.release.binary

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Test: m1.clang.static.release.binary

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Test: ubuntu.gcc.static.release.binary

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queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled