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branch: rosetta:commits 「№20903」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№487」
Merge: 「452533b21」← 「4cda53c4f」  code diff
Scheduled at: 2025-07-31 16:40:32.935588
ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №487 RosettaCommons/rosetta/main ← klimaj/rosetta/logs Merge: 452533b21daa7fe99ecdae9a90fbbe7f0b49c194←4cda53c4f289deb5222e5d051c311b627c8df1c9 Test PyRosettaCluster protocol logging from multiple processes ---------------- Merge commit message: Temporarily ignore errors for improved diagnostics

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branch: rosetta:commits 「№20902」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№487」
Merge: 「452533b21」← 「c3f6e5c70」  code diff
Scheduled at: 2025-07-31 16:02:06.128585
ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №487 RosettaCommons/rosetta/main ← klimaj/rosetta/logs Merge: 452533b21daa7fe99ecdae9a90fbbe7f0b49c194←c3f6e5c70aaf65a7be9677128dc8cfbf7897ca1b Test PyRosettaCluster protocol logging from multiple processes ---------------- Merge commit message: Isolate distributed.cluster test cases to prevent logging spillover

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branch: rosetta:commits 「№20901」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№487」
Merge: 「452533b21」← 「4b736ea81」  code diff
Scheduled at: 2025-07-31 02:20:29.488567
ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №487 RosettaCommons/rosetta/main ← klimaj/rosetta/logs Merge: 452533b21daa7fe99ecdae9a90fbbe7f0b49c194←4b736ea813e06d472560ee58ed04bab52c7ee31a Test PyRosettaCluster protocol logging from multiple processes ---------------- Merge commit message: Set logging handler formatters

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branch: rosetta:commits 「№20900」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№487」
Merge: 「452533b21」← 「32fdd607a」  code diff
Scheduled at: 2025-07-30 23:38:24.797303
ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №487 RosettaCommons/rosetta/main ← klimaj/rosetta/logs Merge: 452533b21daa7fe99ecdae9a90fbbe7f0b49c194←32fdd607a74aa4c6ff08f6156d2862c06c76bf37 Test PyRosettaCluster protocol logging from multiple processes ---------------- Merge commit message: Disable pyrosetta.tests.distributed.cluster.test_logging to test formatting change

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branch: rosetta:commits 「№20899」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№480」
Merge: 「fce88fc4b」← 「fc72db1cb」  code diff
Scheduled at: 2025-07-30 18:10:28.603522
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №480 RosettaCommons/rosetta/main ← roccomoretti/rosetta/fix_ligand_terminus_issue Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←fc72db1cb6c2013046ca09312c4f4739d37b9f4e Fix loading of ligands when three letter code matches NCAA ---------------- Merge commit message: Adjust simple_metrics_b_factor for glycan codes

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Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5
Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5


branch: rosetta:commits 「№20898」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№487」
Merge: 「389c9b9a2」← 「cd2c4820b」  code diff
Scheduled at: 2025-07-30 01:02:38.385570
ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №487 RosettaCommons/rosetta/main ← klimaj/rosetta/logs Merge: 389c9b9a2d9623d73ca348ae522924477675649f←cd2c4820b4d6cea2f58887246b836e4d417ffac0 Test PyRosettaCluster protocol logging from multiple processes ---------------- Merge commit message: Update simulation names

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branch: rosetta:commits 「№20897」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№487」
Merge: 「389c9b9a2」← 「6eaf3df16」  code diff
Scheduled at: 2025-07-29 18:52:56.465420
ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-22.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-24.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit

Pull Request №487 RosettaCommons/rosetta/main ← klimaj/rosetta/logs Merge: 389c9b9a2d9623d73ca348ae522924477675649f←6eaf3df166a6ab690bbae5cf07ded253369e992c Test PyRosettaCluster protocol logging from multiple processes ---------------- Merge commit message: Add new line

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branch: rosetta:commits 「№20896」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№478」
Merge: 「fce88fc4b」← 「a016f6780」  code diff
Scheduled at: 2025-07-29 14:45:48.106860
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №478 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/lyskov-pyrosetta-tests Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←a016f6780dc0e2f75759eea552bb8ab5780420da Refactor PyRosetta unit tests to always run in fresh venv, disable distributed tests for Python-3.12 builds. ---------------- Merge commit message: disable distributed tests for 3.12

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branch: rosetta:commits 「№20895」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№478」
Merge: 「fce88fc4b」← 「0a7c6f1e3」  code diff
Scheduled at: 2025-07-28 19:36:36.580212
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №478 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/lyskov-pyrosetta-tests Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←0a7c6f1e3503f293e1fb30d34b00129fedc35fa7 dummy PR to trigger test run for main ---------------- Merge commit message: refactor PyRosetta tests to use fresh venv each time

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branch: rosetta:commits 「№20894」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№485」
Merge: 「fce88fc4b」← 「f3714739d」  code diff
Scheduled at: 2025-07-26 23:21:00.775494
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №485 RosettaCommons/rosetta/main ← klimaj/rosetta/deterministic_flag Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←f3714739d9639f021812fb1802b3ef1d3fd58e26 Add the deterministic_flag option to the ProteinMPNNProbabilitiesMetric SimpleMetric ---------------- Merge commit message: Beautify

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Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
output_schema


branch: rosetta:commits 「№20893」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№485」
Merge: 「fce88fc4b」← 「3a3334a4a」  code diff
Scheduled at: 2025-07-26 18:11:48.173366
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №485 RosettaCommons/rosetta/main ← klimaj/rosetta/deterministic_flag Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←3a3334a4a2ff5cbed3aa966bf1cd23f8e5085201 Add the deterministic_flag option to the ProteinMPNNProbabilitiesMetric SimpleMetric ---------------- Merge commit message: Clean up

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Test: linux.gcc.code_quality.beautification

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Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
tensorflow_manager
Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5


branch: rosetta:commits 「№20892」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№484」
Merge: 「fce88fc4b」← 「dc02264d9」  code diff
Scheduled at: 2025-07-26 17:44:03.267657
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python39.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python38.PyRosetta.unit ubuntu-20.04.gcc.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-22.04.clang.python39.PyRosetta.unit ubuntu.clang.python310.PyRosetta.unit ubuntu.clang.python311.PyRosetta.unit ubuntu.clang.python312.PyRosetta.unit ubuntu.clang.python313.PyRosetta.unit ubuntu.clang.python38.PyRosetta.unit ubuntu.clang.python39.PyRosetta.unit ubuntu.gcc.python310.PyRosetta.unit ubuntu.gcc.python311.PyRosetta.unit ubuntu.gcc.python312.PyRosetta.unit ubuntu.gcc.python313.PyRosetta.unit ubuntu.gcc.python38.PyRosetta.unit ubuntu.gcc.python39.PyRosetta.unit ubuntu-20.04.clang.python39.unit ubuntu-22.04.clang.python39.unit

Pull Request №484 RosettaCommons/rosetta/main ← klimaj/rosetta/scope Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←dc02264d95563053413a9f59a9ad93505dddc281 Set correct scope for automatic protocol detection in PyRosettaCluster reproduction ---------------- Merge commit message: Merge branch 'main' of github.com:klimaj/rosetta into scope

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branch: rosetta:commits 「№20891」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№483」
Merge: 「fce88fc4b」← 「1923527fe」  code diff
Scheduled at: 2025-07-26 17:24:38.844596
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №483 RosettaCommons/rosetta/main ← klimaj/rosetta/protocol_settings Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←1923527fe80cb81208be7d4bee41a2a79b418eeb Fix parse_options arguments with local OptionsCollection in ProtocolSettingsMetric.cc ---------------- Merge commit message: Initial commit

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Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
code_template_tests_citations


branch: rosetta:commits 「№20890」
Commited by: Jason C. Klima
GitHub Pull Request link: 「№482」
Merge: 「fce88fc4b」← 「cd30b00f5」  code diff
Scheduled at: 2025-07-26 17:07:12.031853
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №482 RosettaCommons/rosetta/main ← klimaj/rosetta/tracer Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←cd30b00f58517283f92ee90253f50b6972e56a7c Fix stdout in ProtocolSettingsMetric.cc ---------------- Merge commit message: Merge branch 'main' of github.com:klimaj/rosetta into tracer

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Test: ubuntu-20.04.clang.python312.scripts.pyrosetta

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branch: rosetta:commits 「№20889」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№480」
Merge: 「fce88fc4b」← 「87c8c2ea0」  code diff
Scheduled at: 2025-07-25 12:06:01.002497
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
mac.clang.python38.PyRosetta.unit ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration performance profile linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №480 RosettaCommons/rosetta/main ← roccomoretti/rosetta/fix_ligand_terminus_issue Merge: fce88fc4bd527d5f2e5903499b30e7c1c401b2f1←87c8c2ea00e49ef73ca1c6a9fa157600ac04f025 Fix loading of ligands when three letter code matches NCAA ---------------- Merge commit message: Better match the original logic

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Test: linux.gcc.code_quality.beautification

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branch: rosetta:commits 「№20888」
Commited by: Yidan Tang
GitHub commit link: 「074c601be22c1525」
Difference from previous tested commit:  code diff
Commit date: 2025-06-10 19:45:14
PyRosetta.unit

update RosettaAMRLD protocol capture in demos/ (#440)

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