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branch: master 「№61864」
Commited by: Brahm Yachnin
GitHub commit link: 「6318526bd338804e」
Difference from previous tested commit:  code diff
Commit date: 2022-04-10 19:58:52
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit m1.clang.python38.PyRosetta4.unit m1.clang.python39.PyRosetta4.unit mac.clang.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.bcl.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.gcc.bcl.build.debug mpi mpi.serialization linux.icc.build.debug mac.clang.bcl.build.debug OpenCL mac.clang.python36.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source scientific.ddg_ala_scan scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_kic_fragments_12res scientific.mhc_epitope_energy.debug scientific.mp_f19_sequence_recovery scientific.protein_data_bank_diagnostic.cif linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit m1.clang.python39.unit util.apps windows.build.debug windows.build.release

RosettaAI: Setting rosetta_scripts_scripts submodule to latest origin/master version.

...
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
cmaes_minimizer
Test: gcc-10.gcc.unit

Failed sub-tests (click for more details):
core:CyclicGeometryTwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometryTwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometryTwoChainTests:test_cyclic_permutation_omega core:CyclicGeometryTwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTwoChainTests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_hbonds core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_omega core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_pro_close core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:SapConstraintEnergyTests:test_fast_partial_packing core:SapConstraintEnergyTests:test_helper_lightning core:SapConstraintEnergyTests:test_lightning_packing_partial core:SapConstraintEnergyTests:test_math_mover core:SapConstraintEnergyTests:test_mover core:SapConstraintEnergyTests:test_partial_packing core:SapConstraintEnergyTests:test_selectors core:TestAutoDetectGlycanConnections:test_auto_detect_mmtf_readwrite core:TestAutoDetectGlycanConnections:test_auto_detect_pdb_read protocols:AddMembraneMoverTest:test_anchored_foldtree protocols:AddMembraneMoverTest:test_conformation_invariant protocols:AddMembraneMoverTest:test_default_membrane_position protocols:AddMembraneMoverTest:test_existing_membrane_rsd protocols:AddMembraneMoverTest:test_initial_foldtree protocols:AddMembraneMoverTest:test_initial_spans_setup protocols:AddMembraneMoverTest:test_membrane_jump_tracking protocols:AddMembraneMoverTest:test_membrane_rsd_tracking protocols:AddMembraneMoverTest:test_multi_mem_pose1 protocols:AddMembraneMoverTest:test_multi_mem_pose2 protocols:AddMembraneMoverTest:test_single_tm_span_pose protocols:AlignPDBInfoToSequencesTests:test_SequenceSpecification protocols:AlignPDBInfoToSequencesTests:test_ctor_and_operators protocols:AlignPDBInfoToSequencesTests:test_dna_align protocols:AlignPDBInfoToSequencesTests:test_mode_enum protocols:AlignPDBInfoToSequencesTests:test_multiple protocols:AlignPDBInfoToSequencesTests:test_parse_target_tag protocols:AlignPDBInfoToSequencesTests:test_real_example protocols:AlignPDBInfoToSequencesTests:test_set_modes protocols:AlignPDBInfoToSequencesTests:test_single protocols:AlignPDBInfoToSequencesTests:test_throw_on_fail protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds


branch: master 「№61863」
Commited by: Rocco Moretti
GitHub commit link: 「dc9147dbfa81ce5b」
Difference from previous tested commit:  code diff
Commit date: 2022-04-07 11:40:10
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit m1.clang.python38.PyRosetta4.unit m1.clang.python39.PyRosetta4.unit mac.clang.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.bcl.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.gcc.bcl.build.debug mpi mpi.serialization linux.icc.build.debug mac.clang.bcl.build.debug OpenCL mac.clang.python36.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python36.release.PyRosetta.Debug linux.clang.python37.release.PyRosetta.Debug linux.clang.python38.release.PyRosetta.Debug linux.clang.python39.release.PyRosetta.Debug mac.clang.python36.release.PyRosetta.Debug mac.clang.python39.release.PyRosetta.Debug linux.clang.python36.release.PyRosetta.MinSizeRel linux.clang.python37.release.PyRosetta.MinSizeRel linux.clang.python38.release.PyRosetta.MinSizeRel linux.clang.python39.release.PyRosetta.MinSizeRel m1.clang.python38.release.PyRosetta.MinSizeRel m1.clang.python39.release.PyRosetta.MinSizeRel mac.clang.python39.release.PyRosetta.MinSizeRel ubuntu.clang.python36.release.PyRosetta.MinSizeRel ubuntu.clang.python37.release.PyRosetta.MinSizeRel ubuntu.clang.python38.release.PyRosetta.MinSizeRel ubuntu.clang.python39.release.PyRosetta.MinSizeRel linux.clang.python36.release.PyRosetta.Release linux.clang.python37.release.PyRosetta.Release linux.clang.python38.release.PyRosetta.Release linux.clang.python39.release.PyRosetta.Release m1.clang.python38.release.PyRosetta.Release m1.clang.python39.release.PyRosetta.Release mac.clang.python39.release.PyRosetta.Release ubuntu.clang.python36.release.PyRosetta.Release ubuntu.clang.python37.release.PyRosetta.Release ubuntu.clang.python38.release.PyRosetta.Release ubuntu.clang.python39.release.PyRosetta.Release release.PyRosetta.conda.Release release.source scientific.antibody_h3_modeling scientific.antibody_snugdock.debug scientific.antibody_snugdock scientific.cofactor_binding_sites.debug scientific.cofactor_binding_sites scientific.ddg_ala_scan.debug scientific.design_fast.debug scientific.enzyme_design scientific.glycan_structure_prediction.debug scientific.glycan_structure_prediction scientific.ligand_scoring_ranking.debug scientific.ligand_scoring_ranking scientific.loop_modeling_ccd_12res scientific.loop_modeling_ngk_12res.debug scientific.make_fragments.debug scientific.mp_dock.debug scientific.mp_dock scientific.mp_f19_sequence_recovery.debug scientific.mp_lipid_acc.debug scientific.mp_relax.debug scientific.protein_data_bank_diagnostic.full scientific.relax_cartesian.debug scientific.relax_cartesian scientific.relax_fast.debug scientific.relax_fast_5iter.debug scientific.relax_fast_5iter scientific.rna_denovo_favorites.debug scientific.sewing.debug scientific.stepwise_rna_favorites.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan unit.valgrind gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit m1.clang.python39.unit util.apps windows.build.debug windows.build.release

beautifying

...
Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
tensorflow_manager
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: linux.gcc.mpi.serialization.scientific.glycan_structure_prediction

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Test: linux.clang.scientific.make_fragments.debug

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branch: master 「№61862」
Commited by: Brian Coventry
GitHub commit link: 「086b8c9e81db973b」 「№5948」
Difference from previous tested commit:  code diff
Commit date: 2022-04-07 11:30:31
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit m1.clang.python38.PyRosetta4.unit m1.clang.python39.PyRosetta4.unit mac.clang.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.bcl.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.gcc.bcl.build.debug mpi mpi.serialization linux.icc.build.debug mac.clang.bcl.build.debug OpenCL mac.clang.python36.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source scientific.ddg_ala_scan scientific.glycan_structure_prediction scientific.mhc_epitope_energy.debug scientific.mp_f19_sequence_recovery scientific.protein_data_bank_diagnostic.cif linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit m1.clang.python39.unit util.apps windows.build.debug windows.build.release

Merge pull request #5948 from RosettaCommons/bcov/lk_dome2 Clang Tidy fix for master

...
Test: linux.gcc.code_quality.beautification

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
helical_bundle_predict_psipred
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
rnp_ddg_finalize
Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
tensorflow_manager


branch: master 「№61861」
Commited by: Davide Sala
GitHub commit link: 「d95c9420af12eca7」 「№5934」
Difference from previous tested commit:  code diff
Commit date: 2022-04-07 02:56:27
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit m1.clang.python38.PyRosetta4.unit m1.clang.python39.PyRosetta4.unit mac.clang.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.bcl.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.gcc.bcl.build.debug mpi mpi.serialization linux.icc.build.debug mac.clang.bcl.build.debug OpenCL mac.clang.python36.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration maintenance.documentation performance profile release.PyRosetta.Debug linux.clang.python36.release.PyRosetta.MinSizeRel linux.clang.python37.release.PyRosetta.MinSizeRel linux.clang.python38.release.PyRosetta.MinSizeRel mac.clang.python37.release.PyRosetta.MinSizeRel linux.clang.python39.release.PyRosetta.Release mac.clang.python37.release.PyRosetta.Release mac.clang.python38.release.PyRosetta.Release release.source scientific.antibody_h3_modeling.debug scientific.glycan_structure_prediction scientific.mp_relax scientific.stepwise_rna_favorites linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit m1.clang.python39.unit util.apps windows.build.debug windows.build.release

Merge pull request #5934 from RosettaCommons/davidesala/fixing_deerio fixing DEERIO.cc, bug prevented the usage of epr_deer_score E term

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Test: linux.gcc.code_quality.beautification

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
rnp_ddg_finalize
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking


branch: master 「№61860」
Commited by: Brian Coventry
GitHub commit link: 「41526019155db8ff」 「№5819」
Difference from previous tested commit:  code diff
Commit date: 2022-04-04 13:54:15
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit m1.clang.python38.PyRosetta4.unit m1.clang.python39.PyRosetta4.unit mac.clang.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.bcl.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.gcc.bcl.build.debug mpi mpi.serialization linux.icc.build.debug mac.clang.bcl.build.debug OpenCL mac.clang.python36.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python36.release.PyRosetta.Debug linux.clang.python37.release.PyRosetta.Debug linux.clang.python38.release.PyRosetta.Debug linux.clang.python39.release.PyRosetta.Debug mac.clang.python36.release.PyRosetta.Debug mac.clang.python37.release.PyRosetta.Debug mac.clang.python38.release.PyRosetta.Debug mac.clang.python39.release.PyRosetta.Debug linux.clang.python36.release.PyRosetta.MinSizeRel linux.clang.python37.release.PyRosetta.MinSizeRel linux.clang.python38.release.PyRosetta.MinSizeRel linux.clang.python39.release.PyRosetta.MinSizeRel m1.clang.python38.release.PyRosetta.MinSizeRel m1.clang.python39.release.PyRosetta.MinSizeRel mac.clang.python36.release.PyRosetta.MinSizeRel mac.clang.python37.release.PyRosetta.MinSizeRel mac.clang.python38.release.PyRosetta.MinSizeRel mac.clang.python39.release.PyRosetta.MinSizeRel ubuntu.clang.python36.release.PyRosetta.MinSizeRel ubuntu.clang.python37.release.PyRosetta.MinSizeRel ubuntu.clang.python38.release.PyRosetta.MinSizeRel ubuntu.clang.python39.release.PyRosetta.MinSizeRel linux.clang.python36.release.PyRosetta.Release linux.clang.python37.release.PyRosetta.Release linux.clang.python38.release.PyRosetta.Release linux.clang.python39.release.PyRosetta.Release m1.clang.python38.release.PyRosetta.Release m1.clang.python39.release.PyRosetta.Release mac.clang.python36.release.PyRosetta.Release mac.clang.python37.release.PyRosetta.Release mac.clang.python38.release.PyRosetta.Release mac.clang.python39.release.PyRosetta.Release ubuntu.clang.python36.release.PyRosetta.Release ubuntu.clang.python37.release.PyRosetta.Release ubuntu.clang.python38.release.PyRosetta.Release ubuntu.clang.python39.release.PyRosetta.Release release.PyRosetta.conda.Release release.source scientific.abinitio_RosettaNMR_pcs.debug scientific.abinitio_RosettaNMR_pcs scientific.abinitio_RosettaNMR_rdc.debug scientific.docking_ensemble.debug scientific.enzyme_design.debug scientific.fragments_picking.debug scientific.glycan_dock.debug scientific.ligand_docking scientific.loop_modeling_kic_12res.debug scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_kic_fragments_12res scientific.mp_f19_decoy_discrimination.debug scientific.mp_f19_decoy_discrimination scientific.mp_f19_tilt_angle.debug scientific.mp_f19_tilt_angle scientific.relax_fast scientific.rna_denovo_favorites scientific.sewing scientific.simple_cycpep_predict.debug scientific.simple_cycpep_predict linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan unit.valgrind gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit m1.clang.python39.unit util.apps windows.build.debug windows.build.release

Merge pull request #5819 from RosettaCommons/bcov/lk_dome1 lk_dome energy for water interaction

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Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: linux.clang.scientific.fragments_picking.debug

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Test: linux.clang.scientific.mp_f19_decoy_discrimination.debug

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Test: linux.clang.scientific.mp_f19_decoy_discrimination

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branch: master 「№61859」
Commited by: Guangfeng Zhou
GitHub commit link: 「8039992a6678fbfc」 「№5689」
Difference from previous tested commit:  code diff
Commit date: 2022-03-30 13:24:37
scientific.docking_ensemble scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50

Merge pull request #5689 from RosettaCommons/guangfeng/galiganddock_update2 GALigandDock update

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Test: linux.clang.scientific.docking_ensemble

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branch: master 「№61858」
Commited by: Jack Maguire
GitHub commit link: 「61cfbc7a9fdb00b7」 「№5921」
Difference from previous tested commit:  code diff
Commit date: 2022-03-23 22:24:03
scientific.sb_franklin2019_mpddg

Merge pull request #5921 from RosettaCommons/JackMaguire/QOLSeleFuncs This PR lets you call selector.selection_positions( pose ) directly to get a list of selected resids. I also added the equivalent feature for JumpSelectors Thanks Jared for the review!

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branch: master 「№61857」
Commited by: Jack Maguire
GitHub commit link: 「c8ed9746cc77609b」 「№5918」
Difference from previous tested commit:  code diff
Commit date: 2022-03-21 19:45:22
scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50

Merge pull request #5918 from RosettaCommons/JackMaguire/JumpForResidueCtor Quality-of-life constructor for JumpForResidue jump selector

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50.debug

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50

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branch: master 「№61856」
Commited by: Andrew Leaver-Fay
GitHub commit link: 「c8ac1099370341d2」 「№5909」
Difference from previous tested commit:  code diff
Commit date: 2022-03-21 16:54:47
scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50 scientific.sb_franklin2019_mpddg

Merge pull request #5909 from RosettaCommons/aleaverfay/fix_lr_bg_energy_accum_in_pack_daemon Fixing a bug in MSD background long-range energy calc; only affected multistate design runs. Previously, long range two body energies for pairs of background residues were not being accumulated into the background_energies_ which would lead to 1) inaccurate representation of total energies of the states that were being repacked and 2) a significant delta between those states and poses that were not being packed at all. This affected both the disulfide and rama_prepro terms.

Vikram K. Mulligan 3 years
Note: this merge seems to have introduced a submodule regression.
Andrew Leaver-Fay 3 years
I've spent all evening trying to figure this out, but as far as I can tell, the last time the rosetta_scripts_scripts submodule changed was with your commit 3 days ago, Vikram, which looks intentional. https://github.com/RosettaCommons/main/commit/6b86053d25f8a318b4752cea116bffdd08982ec5
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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50.debug

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50

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branch: master 「№61855」
Commited by: Vikram K. Mulligan
GitHub commit link: 「a4d79705213bc2ac」 「№5916」
Difference from previous tested commit:  code diff
Commit date: 2022-03-20 21:59:37
scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50

Merge pull request #5916 from RosettaCommons/vmullig/fix_new_macos_errors Fix issues flagged by latest clang on MacOS The new version of clang on MacOS flags a bunch of issues in the code. Fixing these so that I can finish pull request #5915.

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50

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branch: master 「№61854」
Commited by: Andy Watkins
GitHub commit link: 「ca41db89f4a9d7b6」 「№5917」
Difference from previous tested commit:  code diff
Commit date: 2022-03-19 18:35:01

Merge pull request #5917 from RosettaCommons/everyday847/update_stepwise_docs Update to stepwise docs; submodule bump

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branch: master 「№61853」
Commited by: Vikram K. Mulligan
GitHub commit link: 「fee054287611aef6」 「№5914」
Difference from previous tested commit:  code diff
Commit date: 2022-03-18 17:28:53

Merge pull request #5914 from RosettaCommons/revert-5573-vmullig/citation_info_in_docs Temporarily revert "Ensure that the CitationManager exports citation information in the auto-generated documentation" Reverts RosettaCommons/main#5573 This PR created the following problems: - Unit tests time out on older hardware. - Profile tests use more memory. Both are likely due to some subset of movers, filters, etc. loading large amounts of data on instantiation (since all movers, filters, etc. are now instantiated once during XSD generation). This likely needs to be fixed before re-merging this. @JackMaguire @roccomoretti

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branch: master 「№61852」
Commited by: Adam Moyer, PhD
GitHub commit link: 「c2f79e4cb0e23094」 「№5836」
Difference from previous tested commit:  code diff
Commit date: 2022-03-16 15:20:59
scientific.sb_franklin2019_mpddg

Merge pull request #5836 from RosettaCommons/atom-moyer/align_reference_atom_ids Atom moyer/align reference atom ids

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branch: master 「№61851」
Commited by: Sergey Lyskov
GitHub commit link: 「512e58946eaed9de」
Difference from previous tested commit:  code diff
Commit date: 2022-03-13 13:42:04

dummy commit to rigger weekly release

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branch: master 「№61850」
Commited by: Brahm Yachnin
GitHub commit link: 「9907e74b22a2c9bb」 「№5888」
Difference from previous tested commit:  code diff
Commit date: 2022-03-08 23:17:49

Merge pull request #5888 from RosettaCommons/BYachnin/add_setters_for_sheettopology_helixkink Add getters and setters to HelixKinkFilter and SheetTopologyFilter These classes have very little in the way of getters and setters to access and modify member data. This makes it tricky to use natively in PyRosetta without XML parsing. This PR simply adds getters and setters to the classes. Thanks Vikram for the review.

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branch: master 「№61849」
Commited by: Andy Watkins
GitHub commit link: 「7d40d84d8ee4f584」 「№5856」
Difference from previous tested commit:  code diff
Commit date: 2022-03-08 14:58:14

Merge pull request #5856 from RosettaCommons/everyday847/cyrus_atom_type_updates MM atom type updates

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