Fix sqrt.

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• foldit.build.release
• foldit.unit.debug 「1」

Merge pull request #6482 from RosettaCommons/interactive/update-components-script [Foldit] For components:

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• foldit.build.debug
• foldit.build.release
• foldit.unit.debug
• foldit.unit.release

Merge pull request #6480 from RosettaCommons/interactive/band-opts [Foldit] one-way bands

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• foldit.build.debug
• foldit.build.release
• foldit.unit.debug
• foldit.unit.release

Merge pull request #6467 from RosettaCommons/roccomoretti/interactive_compound_identity [Foldit] Add a Ligand Identity Filter. For compound refinement puzzles, it would be good to have an objective which encourages people to move off of the starting ligand. (Particularly for starting structures which may have already been optimized into the Foldit scorefunction.) The current set of objectives don't quite work in this respect. This PR adds a Ligand Identity filter, which allows you to give a bonus if a ligand matches a set of identities (or depending on how you have things set, if it doesn't match the listed ligands.) Also, I have included a bug fix to the Ligand Similarity filter -- it looks like some ligands have issues with the filter because of stereo-chemistry annotations. This should fix that.

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• foldit.build.release
• foldit.unit.debug 「1」

Merge pull request #6454 from RosettaCommons/jtscott/interactive_molecular_weight_objective_update [Foldit] Molecular Weight Lower Bound

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Merge pull request #6435 from RosettaCommons/interactive/petrides/fix_sf_density_loading [Foldit] Fixes for Denstiy Refinement Puzzles Run on Server

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• foldit.build.release

Merge pull request #6413 from RosettaCommons/interactive/petrides/density_refinement [Foldit] Density Refinement Tool

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• foldit.build.release
• foldit.unit.debug 「1」

Merge pull request #6409 from RosettaCommons/stenheinze/interactive-fix-libc-linking [Foldit] Stenheinze/interactive fix libc linking

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• foldit.build.release
• foldit.unit.debug 「1」
• foldit.unit.release 「1」

Merge pull request #6383 from RosettaCommons/jtscott/interactive_ligand_queue_conformer_error Ligand Queue Conformer Error

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• foldit.build.release
• foldit.unit.release 「1」

Merge pull request #6375 from RosettaCommons/roccomoretti/interactive_clogp_updates [Foldit] Add lower bounds for various Ligand Objectives. The cLogP, HbondDonor and HbondAcceptor objectives were lacking lower bounds on their settings. Add settings for these lower bounds. I also adjusted how cLogP can calculate its penalty to be slightly different. (The default behavior for filters should be the same as before.)

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• foldit.build.release

Merge pull request #6377 from RosettaCommons/roccomoretti/interactive_properties_fix [Foldit] Fix ligand property display. Ligand properties are floating point numbers. Don't cram them through Size. (Especially as they may become negative.)

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• foldit.build.release
• foldit.unit.debug 「2」

Merge pull request #6374 from RosettaCommons/roccomoretti/interactive_limit_ligand_matches [Foldit] Update LigandSubstructureFilter to allow setting the maximum number of matches. Add a parameter to the LigandSubstructureFilter to allow the setup to limit the number of matches (per pattern) which are counted. This not only allows us to limit how negative the score can go when you have multiple matches of the pattern (potentially useful when there's high degeneracy in the structure), but it allows us to use it with a negative penalty to create desired pattern bonuses without exposing us to pattern stacking exploits like the one which was seen for the VHL Round 5 puzzle.

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• foldit.build.release
• foldit.unit.debug 「1」

Merge pull request #6348 from RosettaCommons/koepnick/foldit_ignore_zero_occ [Foldit] Don't ignore atoms with zero occupancy

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• foldit.build.release

Empty commit for release PR

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• foldit.build.release
• foldit.unit.release 「1」

Merge pull request #6341 from RosettaCommons/interactive/petrides/fix_hbond_trim_crash [Foldit] Fix Lingering Trim Crash and Undo Behavior For Trim Action

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• foldit.build.release

Merge pull request #6342 from RosettaCommons/jtscott/interactive_ligand_queue_update [Foldit] Ligand Queue Update

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• foldit.build.release

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