Test: ubuntu-20.04.clang.foldit.build.debug 「view this page in B3 βῆτα server」
Branch: interactive/develop 「revision: №614」
Test files: 「file-system-view」 「file-list-view」
Daemon: nobu-3     Started at: 2024-05-16 16:33:00     Run time: 0:02:13      State: failed


Test Log

Running: cd /home/benchmark/rosetta/source/cmake_3/build_debug && cmake -G Ninja . && ninja -j 48 svn: E170013: Unable to connect to a repository at URL 'svn://foldit-dev.ipd.uw.edu/local-interactive/linux_x64-ubuntu_20_04' svn: E000111: Can't connect to host 'foldit-dev.ipd.uw.edu': Connection refused Encounter error while executing: cd /home/benchmark/prefix && svn checkout svn://foldit-dev.ipd.uw.edu/local-interactive/linux_x64-ubuntu_20_04 local-interactive Updating build files ... Command line: cd /home/benchmark/rosetta && python script/make.py running: cd source && ./update_submodules.sh Updating submodules needed for compilation. running: cd source && /usr/bin/python version.py Running versioning script ... Done. (0.7 seconds) running: cd source/src/core/chemical/residue_properties && /usr/bin/python update_ResidueType_enum_files.py Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed running: cd script/novice/components && /usr/bin/python update_database.py running: cd source/src/basic/options && /usr/bin/python options.py Number of option files updated: 0 Total 4616 options. running: cd source/cmake_3 && /usr/bin/python make_test.py all project running: cd source/cmake_3 && /usr/bin/python make_test.py all files inputs running: cd source/cmake_3 && /usr/bin/python make_project.py cifparse running: cd source/cmake_3 && /usr/bin/python make_project.py libxml2 running: cd source/cmake_3 && /usr/bin/python make_project.py rdkit running: cd source/cmake_3 && /usr/bin/python make_project.py zlib running: cd source/cmake_3 && /usr/bin/python make_project.py numeric running: cd source/cmake_3 && /usr/bin/python make_project.py utility running: cd source/cmake_3 && /usr/bin/python make_project.py basic Running versioning script ... Done. (0.7 seconds) Number of option files updated: 0 Total 4616 options. Updating submodules needed for compilation. running: cd source/cmake_3 && /usr/bin/python make_project.py ObjexxFCL running: cd source/cmake_3 && /usr/bin/python make_project.py core.1 running: cd source/cmake_3 && /usr/bin/python make_project.py core.2 Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed running: cd source/cmake_3 && /usr/bin/python make_project.py core.3 running: cd source/cmake_3 && /usr/bin/python make_project.py core.4 running: cd source/cmake_3 && /usr/bin/python make_project.py core.5 running: cd source/cmake_3 && /usr/bin/python make_project.py core.6 running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.1 running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.2a running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.2b running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.3 running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.4 running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5a running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5b running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5c running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5d running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5e running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5f running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5g running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.5h running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.6a running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.6b running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.6c running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.6d running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.6e running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.7 running: cd source/cmake_3 && /usr/bin/python make_project.py protocols.8 running: cd source/cmake_3 && /usr/bin/python make_project.py interactive running: cd source/cmake_3 && /usr/bin/python make_project.py standalone running: cd source/cmake_3 && /usr/bin/python make_project.py game running: cd source/cmake_3 && /usr/bin/python make_component.py removing cmp-resources creating cmp-resources copied 2504 and skipped 0 files removing cmp-database creating cmp-database dynamic file not yet generated: database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin copied 1092 and skipped 1 files -- Detected GCC Version >= 4.8 -- Configuring done -- Generating done -- Build files have been written to: /home/benchmark/rosetta/source/cmake_3/build_debug [0/5447] Building CXX object CMakeFiles/rdkit.dir/home/benchmark/rosetta/source/external/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.cpp.o [0/5447] Building CXX object CMakeFiles/rdkit.dir/home/benchmark/rosetta/source/external/rdkit/GraphMol/RGroupDecomposition/RGroupFingerprintScore.cpp.o [0/5447] Building CXX object CMakeFiles/rdkit.dir/home/benchmark/rosetta/source/external/rdkit/GraphMol/RGroupDecomposition/RGroupGa.cpp.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ConstraintResidueSelector.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/CutpointResidueSelector.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ProteinResidueSelector.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/MoveMapFactoryToNamedMoveMapMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ReleaseConstraintFromResidueMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ResidueLabelsToPymolSelectionMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SavePDBInfoMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SplitAndMixPoseMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/Nub.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/utils.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/NubInitioMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CreateDistanceConstraint.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideInternalHbondsFilter.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideInternalHbondsMetric.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideStubMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/DeclareBond.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/FlipChiralityMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CrosslinkerMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CycpepSymmetryFilter.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideCyclizeMover.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/RamaMutationSelector.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CreateAngleConstraint.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CreateTorsionConstraint.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/SymmetricCycpepAlign.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/TryDisulfPermutations.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/1_4_BBMB_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/CrosslinkerMoverHelper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/Metal_HelperBase.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/OctahedralMetal_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/SquarePlanarMetal_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/SquarePyramidalMetal_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TBMB_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TMA_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TetrahedralMetal_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TrigonalPlanarMetal_Helper.cc.o [0/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TrigonalPyramidalMetal_Helper.cc.o [1/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o FAILED: CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\"a\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=0 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0\" -DCPPDB_WITH_SQLITE3 -DCXX14 -DCXX14_OR_LATER -DENABLE_MPNN -DLINUX -DMULTI_THREADED -DNOCRASHREPORT -DNO_PROF -DPTR_MODERN -DPTR_STD -DTRIO_HAVE_CONFIG_H -DUSE_GL_GLUT_H -DUSE_GL_GL_H -DUSE_RDKIT -D_DEBUG -I../.. -I../../src -I../../src/platform/linux -I../../external -I../../external/boost_submod -I../../external/boost_1_62_0-interactive -I../../external/cxxtest -I../../external/dbio -I../../external/dbio/sqlite3 -I../../external/include -I../../external/libxml2/include -I../../external/rdkit -I/home/benchmark/prefix/local-interactive/curl-7.76.1/include -I/home/benchmark/prefix/local-interactive/lua-5.1.4-c/include -I/home/benchmark/prefix/local-interactive/oscpack-1.1.0/include -I/home/benchmark/prefix/local-interactive/pytorch-1.12.0/include -std=c++14 -pipe -fPIC -Wno-deprecated -ggdb -MD -MT CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o -MF CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o.d -o CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o -c /home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc In file included from /home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc:15: ../../src/protocols/protein_mpnn/util.hh:29:10: fatal error: torch/script.h: No such file or directory 29 | #include <torch/script.h> | ^~~~~~~~~~~~~~~~ compilation terminated. [2/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o FAILED: CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\"a\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=0 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0\" -DCPPDB_WITH_SQLITE3 -DCXX14 -DCXX14_OR_LATER -DENABLE_MPNN -DLINUX -DMULTI_THREADED -DNOCRASHREPORT -DNO_PROF -DPTR_MODERN -DPTR_STD -DTRIO_HAVE_CONFIG_H -DUSE_GL_GLUT_H -DUSE_GL_GL_H -DUSE_RDKIT -D_DEBUG -I../.. -I../../src -I../../src/platform/linux -I../../external -I../../external/boost_submod -I../../external/boost_1_62_0-interactive -I../../external/cxxtest -I../../external/dbio -I../../external/dbio/sqlite3 -I../../external/include -I../../external/libxml2/include -I../../external/rdkit -I/home/benchmark/prefix/local-interactive/curl-7.76.1/include -I/home/benchmark/prefix/local-interactive/lua-5.1.4-c/include -I/home/benchmark/prefix/local-interactive/oscpack-1.1.0/include -I/home/benchmark/prefix/local-interactive/pytorch-1.12.0/include -std=c++14 -pipe -fPIC -Wno-deprecated -ggdb -MD -MT CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o -MF CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o.d -o CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o -c /home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc In file included from /home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc:16: ../../src/protocols/protein_mpnn/ProteinMPNN.hh:34:10: fatal error: torch/script.h: No such file or directory 34 | #include <torch/script.h> | ^~~~~~~~~~~~~~~~ compilation terminated. [3/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideInternalHbondsFilter.cc.o [4/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ResidueLabelsToPymolSelectionMover.cc.o [5/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/SquarePlanarMetal_Helper.cc.o [6/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ReleaseConstraintFromResidueMover.cc.o [7/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CycpepSymmetryFilter.cc.o [8/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cc.o [9/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ConstraintResidueSelector.cc.o [10/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/SymmetricCycpepAlign.cc.o [11/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/RamaMutationSelector.cc.o [12/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ProteinResidueSelector.cc.o [13/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/CutpointResidueSelector.cc.o [14/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/FlipChiralityMover.cc.o [15/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TrigonalPlanarMetal_Helper.cc.o [16/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SavePDBInfoMover.cc.o [17/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CreateAngleConstraint.cc.o [18/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/OversaturatedHbondAcceptorFilter.cc.o [19/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/CrosslinkerMoverHelper.cc.o [20/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CreateDistanceConstraint.cc.o [21/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.cc.o [22/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/DeclareBond.cc.o [23/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/SquarePyramidalMetal_Helper.cc.o [24/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/Metal_HelperBase.cc.o [25/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/OctahedralMetal_Helper.cc.o [26/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TetrahedralMetal_Helper.cc.o [27/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TrigonalPyramidalMetal_Helper.cc.o [28/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CreateTorsionConstraint.cc.o [29/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/TryDisulfPermutations.cc.o [30/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideInternalHbondsMetric.cc.o [31/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/utils.cc.o [32/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/MoveMapFactoryToNamedMoveMapMover.cc.o [33/5447] Building CXX object CMakeFiles/rdkit.dir/home/benchmark/rosetta/source/external/rdkit/GraphMol/RGroupDecomposition/RGroupFingerprintScore.cpp.o [34/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/Nub.cc.o [35/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TBMB_Helper.cc.o [36/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/1_4_BBMB_Helper.cc.o [37/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SplitAndMixPoseMover.cc.o [38/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideStubMover.cc.o [39/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/crosslinker/TMA_Helper.cc.o [40/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cc.o [41/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc.o [42/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/CrosslinkerMover.cc.o [43/5447] Building CXX object CMakeFiles/protocols.6a.dir/home/benchmark/rosetta/source/src/protocols/cyclic_peptide/PeptideCyclizeMover.cc.o [44/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cc.o [45/5447] Building CXX object CMakeFiles/rdkit.dir/home/benchmark/rosetta/source/external/rdkit/GraphMol/RGroupDecomposition/RGroupGa.cpp.o [46/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cc.o [47/5447] Building CXX object CMakeFiles/protocols.6b.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/NubInitioMover.cc.o [48/5447] Building CXX object CMakeFiles/rdkit.dir/home/benchmark/rosetta/source/external/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.cpp.o ninja: build stopped: subcommand failed.

Sub-Tests Results

All sub-tests

JSON output

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