Pushed Revisions

branch: master 「№56884」
Commited by: Sergey Lyskov
GitHub commit link: 「c8714bee185ea03b」
Difference from previous tested commit: code diff
Commit date: 2014-05-28 16:48:21

branch: master 「№56883」
Commited by: Doo Nam Kim
GitHub commit link: 「93b4dec1b6c6c555」
Difference from previous tested commit: code diff
Commit date: 2014-05-28 16:41:09

[update of SandwichFeatures] - allow to exclude sandwiches that have S-S bond since those having S-S bond in core tend to have big holes (bad packing score) - should not change any integration tests other than (expected) features and features_database_schema (if any)

branch: master 「№56882」
Commited by: Frank DiMaio
GitHub commit link: 「bea7e7b78285be2e」
Difference from previous tested commit: code diff
Commit date: 2014-05-28 16:27:05

branch: master 「№56881」
Commited by: Zibo Chen
GitHub commit link: 「3253108ab3bd883c」
Difference from previous tested commit: code diff
Commit date: 2014-05-28 01:55:26

branch: master 「№56880」
Commited by: Zibo Chen
GitHub commit link: 「a99a1e5b89375f78」
Difference from previous tested commit: code diff
Commit date: 2014-05-28 01:48:48

run_i and run_j options to split the rotation search into run_j number of jobs

branch: master 「№56879」
Commited by: Frank DiMaio
GitHub commit link: 「9799c8939f0ef5a8」
Difference from previous tested commit: code diff
Commit date: 2014-05-27 19:55:14

Bugfix: derivitives for RG (centroid minimization) are now correct for symmetric poses. Hybrid integration test changes expected.

branch: master 「№56878」
Commited by: Sergey Lyskov
GitHub commit link: 「e170c85ea00ab13d」
Difference from previous tested commit: code diff
Commit date: 2014-05-27 17:07:19

branch: master 「№56877」
Commited by: Gabriel Rocklin
GitHub commit link: 「936d02e00de834ec」
Difference from previous tested commit: code diff
Commit date: 2014-05-27 16:38:51

Fixed bug in LayerDesign bug altered layer cutoffs if use_sidechain_neighbors was set to False

branch: master 「№56876」
Commited by: Sergey Lyskov
GitHub commit link: 「cf91804134916af9」
Difference from previous tested commit: code diff
Commit date: 2014-05-27 15:50:21

branch: master 「№56875」
Commited by: Sergey Lyskov
GitHub commit link: 「29c040d0bc17455c」
Difference from previous tested commit: code diff
Commit date: 2014-05-27 00:57:08

branch: master 「№56874」
Commited by: Sergey Lyskov
GitHub commit link: 「802764a8b9e548d6」
Difference from previous tested commit: code diff
Commit date: 2014-05-26 18:36:46

branch: master 「№56873」
Commited by: Sergey Lyskov
GitHub commit link: 「80616601370b0cd2」
Difference from previous tested commit: code diff
Commit date: 2014-05-26 18:13:17

branch: master 「№56872」
Commited by: Sergey Lyskov
GitHub commit link: 「478018e002d3a248」
Difference from previous tested commit: code diff
Commit date: 2014-05-26 13:18:18

branch: master 「№56871」
Commited by: Frank DiMaio
GitHub commit link: 「b63aa35dd0d54353」
Difference from previous tested commit: code diff
Commit date: 2014-05-25 18:26:45

Changing the behavior of centroid disulfide detection. Previously, disulf detection in centroid used CEN-CB distance when detecting disulfides. This leads to problems in symmetric structures where disulfides across symm interfaces are not detected symmetrically (since the distance of CEN_i to CB_j != distance of CB_i to CEN_j). According to the comments in the code, the check should be using CB-CB dist, so I am changing the behavior to that. The behavior is changed for both symmetric and asymmetric poses to be consistent.

branch: master 「№56870」
Commited by: Sergey Lyskov
GitHub commit link: 「bf44bd828d690a87」
Difference from previous tested commit: code diff
Commit date: 2014-05-25 14:19:46

PyRosetta. Adding PyMOLPyRosettaServer.py to final binary package.

branch: master 「№56869」
Commited by: sarel
GitHub commit link: 「05d4ed0554e31f19」
Difference from previous tested commit: code diff
Commit date: 2014-05-25 12:00:49

Adding rudimentary ability to splice into chain2. It's not extensively tested but is probably close. No test changes expected.

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled