Pulled origin master into sripakpa/develop branch. Pulled origin master into sripakpa/develop branch.

• Summary

small fixes to get rna puzzle 12 jobs to run

• Summary

Merge master in to bug fix branch Fixing a bug in the PyMolMover. Also fixing the mac clang build. Also fixing all the builds.

• Summary

Add option to FastRelax RosettaScripts to disable design by default if passed TaskOps as discussed. Please note that in order to design within FR using RS and TaskOps now, one must pass disable_design=false to RS.

• Summary

adding AlignedTHreadOperation to thread a sequence based on a FASTA formatted pairwise sequence alignment.

• Summary

Benchmark scripts: Updating build.levels test so it now automatically run update_options.sh and version.py scripts before checking library levels.

• Summary

Fix build Remove unused variables

• Summary

Warnings as Errors: An integration test will now fail if -Werror is off.

• Summary

Promote ensemble_generator_score12_sidechain_ver2 to public It's mention in the Kellogg et al. paper supplemental, and has been requested on the forums. (Liz says that there's no reason it can't be public, but still recommends against its use.) New integration test for the application

• Summary

Merge branch 'master' of github.com:RosettaCommons/main Resolve Conflicts: source/src/protocols/protein_interface_design/filters/RmsdSimpleFilter.cc Merging master to commit fixes that break pyrosetta and clang builds

• Summary

Adding an option to MinPackMover::parse_my_tag to activate the off-rotamer packer. Also fixing indentation in the RMSD filter as well as a Size initialized with NULL warning / error.

• Summary

Merge branch 'master' of github.com:RosettaCommons/main Update/merge in order to commit Fragments/Epigraft update to origin. This merge will provide the next filters: 1. FragmentLookupFilter 2. SSamount 3. RmsdSimple Plus updates to MotifGraftMover (see Web Documentation)

• Summary

[minor update of sequence_recovery] - removed 'database path' comment ('database path' will be automatically assigned) [update of SandwichFeatures] - added 'exclude_sandwich_that_is_suspected_to_have_not_facing_2_sheets' - better tracers - should not change any integration tests other than (expected) features and features_database_schema (if any)

• Summary

Remove unimplemented EnvLabelSelectorCreator to fix PyRosetta build.

• Summary

Add scriptable claiming and bug fixes to Environment. Also add some new mover supertypes ("MoveMapMover" which is a mover that respects movemaps and "MoverApplyingMover" which is a mover that contains a single other mover that it applies). No (new) integration test changes expected, no (new) unit test breakages expected.

• Summary

changed 2 chain assert to warning.

• Summary

Legend: