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branch: master 「№56788」
Commited by: Justin Porter
GitHub commit link: 「c8f13a1da1f6750f」
Difference from previous tested commit:  code diff
Commit date: 2014-05-09 06:22:59

Fix unit test build.

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branch: master 「№56787」
Commited by: Christoffer Norn
GitHub commit link: 「8da3ebea41dab96f」
Difference from previous tested commit:  code diff
Commit date: 2014-05-09 03:54:09

removing some pose.dump_pdb() in splice, which should only be used for debugging

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branch: master 「№56786」
Commited by: Oliver Lange
GitHub commit link: 「29c5b30fbe228928」
Difference from previous tested commit:  code diff
Commit date: 2014-05-08 15:09:07

fixing FastRelax default options should also be used in parse_my_tags some integration changes expected

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branch: master 「№56785」
Commited by: Doo Nam Kim
GitHub commit link: 「23007e6065bf0f70」
Difference from previous tested commit:  code diff
Commit date: 2014-05-08 11:17:24

should fix broken GenericSimulatedAnnealer UnitTest

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branch: master 「№56784」
Commited by: Justin Porter
GitHub commit link: 「a5705a979dc66f6e」
Difference from previous tested commit:  code diff
Commit date: 2014-05-08 08:33:25

Variety of changes and bug fixes in the Enviroment/Broker2.0 framework, including new movers that provide behaviors required for RASREC sampling. Integration test status: failed tests due to trivial log file changes (fragment loading was slightly modified) or noise in ligand_dock_script. FAIL autoNOE_rosetta FAIL app_exception_handling FAIL ligand_dock_script FAIL metalloprotein_broker FAIL broker FAIL ThreadingInputter FAIL fold_and_dock FAIL broker_membrane

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branch: master 「№56783」
Commited by: Christoffer Norn
GitHub commit link: 「115828dd34fdcf7f」
Difference from previous tested commit:  code diff
Commit date: 2014-05-08 06:46:59

fixing bug in splice related to retriving segments from db

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branch: master 「№56782」
Commited by: Oliver Lange
GitHub commit link: 「940df86df88eea5c」
Difference from previous tested commit:  code diff
Commit date: 2014-05-08 05:17:15

Fix PythonBuild by removing jd2::archive::BaseArchiveManager::register_options() from header

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branch: master 「№56781」
Commited by: Doo Nam Kim
GitHub commit link: 「a6d86d6d36879df1」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 15:40:24

should fix an existing ResidueCountFilter unit test

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branch: master 「№56780」
Commited by: Sergey Lyskov
GitHub commit link: 「80a988e47d1e8dc4」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 15:21:14

Refactoring regression test comparison to make it output less cryptic

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branch: master 「№56779」
Commited by: ch.norn
GitHub commit link: 「39ec6e58fca104c2」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 13:48:58

<?xml version="1.0" encoding="utf-8"?> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> <html> <head> <title>503 Connection timed out</title> </head> <body> <h1>Error 503 Connection timed out</h1> <p>Connection timed out</p> <h3>Guru Meditation:</h3> <p>XID: 3686270381</p> <hr> <p>Varnish cache server</p> </body> </html>

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branch: master 「№56778」
Commited by: Christoffer Norn
GitHub commit link: 「ff2eb406aa688e71」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 13:31:50

adding the talaris calibrated weights

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branch: master 「№56777」
Commited by: Doo Nam Kim
GitHub commit link: 「90d26b3bf69da3b9」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 12:39:53

[update of ResidueCount filter] - if a user wants, it enables count/filter by percentage, not by raw counted number - by default, it counts/fiters by raw number as before - should not change any integration tests

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branch: master 「№56776」
Commited by: Oliver Lange
GitHub commit link: 「ae3fd6d8f84a7627」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 11:09:36

pull from master

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branch: master 「№56775」
Commited by: gideonla
GitHub commit link: 「205cbeb86573af6b」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 10:42:53

Added a new fold tree function to Splice.cc. Should not cause integration test changes

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branch: master 「№56774」
Commited by: Oriel Goldstein
GitHub commit link: 「6801af8871694930」
Difference from previous tested commit:  code diff
Commit date: 2014-05-07 09:27:12

merging orielg/peptiDerive to master: Added a new pilot App: PeptideDeriver Unit test status: Pass Integration test status: All Pass

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branch: master 「№56773」
Commited by: Doo Nam Kim
GitHub commit link: 「0e174ed9ae44aeee」
Difference from previous tested commit:  code diff
Commit date: 2014-05-06 14:01:04

[update of SandwichFeatures] - added a new column 'shortest_dis_between_facing_aro' - sorted writing options by ABC - don't write resfile of sandwich that has non-canonical LR for subsequent design - don't write sandwich that has non-canonical LR if you want - should not change any integration tests other than (expected) features and features_database_schema (if any)

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