branch: master 「№56868」
Commited by: Frank DiMaio
GitHub commit link: 「7e1eaa731a484087」
Difference from previous tested commit:  code diff
Commit date: 2014-05-24 00:01:28

Fixing two symmetry bugs. 1: some code was inadvertently checked into CartesianMinimizerMap that led to VRTs getting moved .. this code has been removed 2: when reading symmetric silent files, update_score_multiply_factor was never updated, leading to symmetryinfo that did not match the dumped structure

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branch: master 「№56867」
Commited by: Sergey Lyskov
GitHub commit link: 「42bf3852b83c4389」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 19:05:53

Fixing PyRosetta build

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branch: master 「№56866」
Commited by: Fang-Chieh Chou
GitHub commit link: 「f96d2c5f1aefef2c」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 17:42:27

Add RNA suite potential score term.

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branch: master 「№56865」
Commited by: Zibo Chen
GitHub commit link: 「c1305ddf24cf8d2b」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 16:59:54

removed unnecessary output to log files

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branch: master 「№56864」
Commited by: Frank DiMaio
GitHub commit link: 「607b88d6bb1c6ea9」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 16:37:46

Reduce memory usage in crystal dock

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branch: master 「№56863」
Commited by: Rocco Moretti
GitHub commit link: 「a1c80b9216f5f868」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 14:13:10

Remove errant backslash breaking build

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branch: master 「№56862」
Commited by: Frank DiMaio
GitHub commit link: 「86eeaf9637e6b6b6」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 14:04:02

Updates for crystal refinement code. Many more options for map construction when rephasing crystal data.

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branch: master 「№56861」
Commited by: Rocco Moretti
GitHub commit link: 「c83db396342a2986」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 13:09:44

Disable failing make_rot_lib unit test The failing portion of the test depends on energy minimization - which (understandably) has platform sensitivity issues. Disable the test until a "better" way of testing it could be found. (note the test was recently added, so we're really back to where we were a week ago).

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branch: master 「№56860」
Commited by: Vikram K. Mulligan
GitHub commit link: 「193ce68599de67cf」
Difference from previous tested commit:  code diff
Commit date: 2014-05-23 03:53:08

Tweaking certain functions that sometimes break the MPI build, depending on the compiler. I think I see what Doo Nam was trying to do, now. On certain MPI compilers, MPIBPool_RSD::create_comm() is creating problems because the variable "returnval" is created and set by an MPI function call, but only used for an assert() statement. I think the compiler optimizations are completely bypassing the assert() in release mode, which means that the compiler thinks that the variable's value is set but never used -- a warning that trips us up due to the warnings-as-errors. I'm switching these assert() checks to runtime_assert_string_msg() checks. The hit in performance will be negligible, and this stops the compiler from tripping. Plus, it's an assert worth making at runtime.

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branch: master 「№56859」
Commited by: Sam DeLuca
GitHub commit link: 「63abdff29dae5e11」
Difference from previous tested commit:  code diff
Commit date: 2014-05-22 23:02:18

adding protocols_b.4 to protocols_b.5.src.settings file. This should fix the build

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branch: master 「№56858」
Commited by: Sergey Lyskov
GitHub commit link: 「af226deee07c863b」
Difference from previous tested commit:  code diff
Commit date: 2014-05-22 18:10:56

Uncommenting Werror flag which which got comment out in r56848.

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branch: master 「№56857」
Commited by: Rocco Moretti
GitHub commit link: 「526870d7232bcab8」
Difference from previous tested commit:  code diff
Commit date: 2014-05-22 12:50:25

Fix headers build.

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branch: master 「№56856」
Commited by: Luki Goldschmidt
GitHub commit link: 「52bca19717198f05」
Difference from previous tested commit:  code diff
Commit date: 2014-05-22 06:19:35

Store filters created in Pose Selectors in a local map to support filter-filter dependencies. Unit Tests: All Pass Integration Tests: All Pass

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branch: master 「№56855」
Commited by: Sam DeLuca
GitHub commit link: 「8f7b631dfd5b7edd」
Difference from previous tested commit:  code diff
Commit date: 2014-05-21 22:32:16

small refactor to fix the library levels problem. I don't think this will fix the clang build, still working on that mystery

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branch: master 「№56854」
Commited by: Doo Nam Kim
GitHub commit link: 「57b4df94b444f828」
Difference from previous tested commit:  code diff
Commit date: 2014-05-21 17:22:07

added site.settings.contador for compilation at Kuhlman lab

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branch: master 「№56853」
Commited by: Rocco Moretti
GitHub commit link: 「e14055199d7c6051」
Difference from previous tested commit:  code diff
Commit date: 2014-05-21 15:31:07

Attempt to fix broken builds

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