this should fix broken mac.clang.build.debug

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fixed broken build by pose::PDBInfoCOP -> pose::PDB_InfoCOP

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[update of SandwichFeatures] - newly introduced 4 more columns (like num_PRO_in_starting_loop_and_1st_3rd_inter_sheet_loop) that seem to prevent aggregation - technically finished all refactoring of SandwichFeatures for now - should not change any integration tests other than (expected) features and features_database_schema (if any)

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Fixing initialization order in BackrubMover to get rid of warnings

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Revert "Debugged TaskOperationFeatures featurs reporter. The feature reporter" Attempting to restore the build, step 2 This reverts commit afcf7f18ee5686f4ba3fb7b69c777b5382721495.

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Revert "Fixed bug introduced by the "disable_design" xml option of FastRelax where FastDesign stopped doing design by default. FastRelax now has a class member variable that can be set by derived classes such as FastDesign." This reverts commit 4d84870a91b788f2ee30e0773a149bca7220ffc9.

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Debugged TaskOperationFeatures featurs reporter. The feature reporter reports the effects of individual task operations on every residue in a pose. The effects of a feature reporter on a residue are whether the residue becomes packable or designable due to the task operation. The bug was that parse_my_tag had a subtly incorrect signature and the the parse_my_tag of the FeaturesReporter base class was being called. The new version of the feature reporter inherits from MetaWidget as a method of inserting itself into the registrator/creator system rathter than having an explicit regristrator and creator.

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Fixed bug introduced by the "disable_design" xml option of FastRelax where FastDesign stopped doing design by default. FastRelax now has a class member variable that can be set by derived classes such as FastDesign.

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Added backrub rotation angle customization to BackrubMover BackrubMover now has the following new data members: bool custom_angle_ // true if backrub rotation angle is customizable bool custom_angle() // gets custom_angle_ void set_custom_angle(bool) // sets custom_angle_ Real next_angle_ // the rotation angle for the next backrub move Real next_angle() // gets the rotation angle for the next backrub move set_next_angle(Real) // sets the rotation angle for the next backrub move custom_angle_ is set to false by default to preserve normal backrub behavior

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ResdidueProperties: improvements to auto-code-generation script update_residue_properties.py now... ...only re-writes the files if changes have occured, ...ignores duplicated properties, and ...is more modular. ---------------------------------------- Unit test status: Not Run Integration test status: Not Run

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PyRosetta. Updating dependency calculator.

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Fixing clang build

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Fixing PyRosetta build

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adding two integration tests for splice_in and splice_out for non-antibody cases

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Reverting f8cb555; with Rhiju's commit just now, all unit tests should be restored

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removing newline from no_final_newline.txt in unit tests. Thanks Doug.

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