Pushed Revisions

branch: master 「№57188」
Commited by: Sergey Lyskov
GitHub commit link: 「78c7260ebb94d5a2」
Difference from previous tested commit: code diff
Commit date: 2014-08-13 13:57:50

Fixing bug #0000349. Fixing PyRosetta Linux version detection for cases when version is two digits.

branch: master 「№57187」
Commited by: Rocco Moretti
GitHub commit link: 「7c95aa7b2ee720ba」「№55」
Difference from previous tested commit: code diff
Commit date: 2014-08-13 12:41:16

Merge pull request #55 from RosettaCommons/roccomoretti/scoredir Don't treat directories like empty score files. Fixes issue Amelie (via Andrew) wrote the devel list about - that local directories (e.g. ./talaris2014/) are treated like empty scorefiles. Alter izstream to error-out when opening a directory on all platforms. Unit tests for new izstream behavior added.

branch: master 「№57186」
Commited by: P. Douglas Renfrew
GitHub commit link: 「2899a83daaed69a1」
Difference from previous tested commit: code diff
Commit date: 2014-08-13 11:36:22

branch: master 「№57185」
Commited by: Oriel Goldstein
GitHub commit link: 「094bccbd94a357e3」
Difference from previous tested commit: code diff
Commit date: 2014-08-13 06:25:28

branch: master 「№57184」
Commited by: jonathaw
GitHub commit link: 「d936ff5dca475b72」
Difference from previous tested commit: code diff
Commit date: 2014-08-13 03:25:10

branch: master 「№57183」
Commited by: sarel
GitHub commit link: 「adfd359011376ecb」
Difference from previous tested commit: code diff
Commit date: 2014-08-13 02:08:30

ppk integration test only showed a failure now, even though the error is due to an energy function evaluation that was likely introduced in the far past. Not sure why this is the case. This commit will restore the test

branch: master 「№57182」
Commited by: Doo Nam Kim
GitHub commit link: 「97075e151a0aa3ed」
Difference from previous tested commit: code diff
Commit date: 2014-08-12 16:52:12

[update of SandwichFeatures] - table name change ( sw_by_components -> sandwich) - generate resfile for more general case also (before this, it supports for poor seq_rec case for RelaxDesign only) - finished refactoring in accordance of better naming convention (use 'using namespace' inside of specific strand_assembly namespace) - should not change any integration tests other than (expected) features and features_database_schema - I think that there is no need to ask 'pull request' since I think that I am the only one who uses SandwichFeatures as of now

branch: master 「№57181」
Commited by: Sergey Lyskov
GitHub commit link: 「bd2c8002ccb5b1ed」
Difference from previous tested commit: code diff
Commit date: 2014-08-12 16:33:50

Updating release_debug settings for all compilers. Making release_debug exactly like 'release' settings but without 'NDEBUG'. Thanks to William Sheffler for pointing this out!

branch: master 「№57180」
Commited by: P. Douglas Renfrew
GitHub commit link: 「0dac84d31b34210d」「№54」
Difference from previous tested commit: code diff
Commit date: 2014-08-12 10:16:57

Merge pull request #54 from RosettaCommons/dougrenfrew/tempnam_mpi Remove use of tempnam for MPI builds.

branch: master 「№57179」
Commited by: Tim Jacobs
GitHub commit link: 「d2f17aaaf57dc0f7」
Difference from previous tested commit: code diff
Commit date: 2014-08-12 09:24:41

branch: master 「№57178」
Commited by: sarel
GitHub commit link: 「a744258ee38478c8」
Difference from previous tested commit: code diff
Commit date: 2014-08-12 07:58:29

branch: master 「№57177」
Commited by: sarel
GitHub commit link: 「52683809448142fa」
Difference from previous tested commit: code diff
Commit date: 2014-08-12 07:56:51

branch: master 「№57176」
Commited by: sarel
GitHub commit link: 「f4f8a60ef2d04323」
Difference from previous tested commit: code diff
Commit date: 2014-08-12 07:56:20

SetAtomTree can now generate a fold tree starting from a specified chain in PDB format (e.g., chain=L)

branch: master 「№57175」
Commited by: Joseph S Harrison
GitHub commit link: 「6988348c51b57284」「№60」
Difference from previous tested commit: code diff
Commit date: 2014-08-11 19:12:17

branch: master 「№57174」
Commited by: Justin Porter
GitHub commit link: 「5aa052be34a075ad」「№59」
Difference from previous tested commit: code diff
Commit date: 2014-08-11 08:36:00

Merge pull request #59 from RosettaCommons/dougrenfrew/fix_aeh Fixing the application exception handling integration test. Passed tests and got the thumbs up from Julia, whose code it mostly changes.

branch: master 「№57173」
Commited by: Tim Jacobs
GitHub commit link: 「9bdec3ef29174144」「№58」
Difference from previous tested commit: code diff
Commit date: 2014-08-10 17:38:10

Merge pull request #58 from RosettaCommons/tjacobs2/fix_link_residues This commit fixes a few issues I ran into while using LinkResidues task operations. In particular, it seems residues were being linked to themselves (which will always cause an assert failure when run in debug mode). Also, added some robustness to the addition of residues after creating links. Previously, this would cause an index-out-of-bounds error. My fix might cause undesirable behavior if residues are added that change residue-numbering (e.g. add rotamer links, create a new residue with resid = 1, repack). Is there a better way to implement this change?

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled