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branch: master 「№57204」
Commited by: Sergey Lyskov
GitHub commit link: 「7174e8b54b08731e」
Difference from previous tested commit:  code diff
Commit date: 2014-08-16 12:56:04

Fixing PyRosetta Mac build. Adding settings for Clang 5.1. Minor improvements to dependency calculation.

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branch: master 「№57203」
Commited by: Rocco Moretti
GitHub commit link: 「0c2306353b86c6f6」
Difference from previous tested commit:  code diff
Commit date: 2014-08-16 11:56:00

Fix "Possibily uninitialized variable warning" on my machine.

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branch: master 「№57202」
Commited by: Labonte
GitHub commit link: 「600faad98dde20f2」
Difference from previous tested commit:  code diff
Commit date: 2014-08-16 01:34:39

fixing build broken by sarel

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branch: master 「№57201」
Commited by: Frank DiMaio
GitHub commit link: 「4309f54708e52331」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 21:07:52

Bugfix for helical symmetries in setup script

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branch: master 「№57200」
Commited by: Brian Weitzner
GitHub commit link: 「4345a86a797c07f4」 「№51」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 18:28:01

Merge pull request #51 from RosettaCommons/weitzner/make-ccd-a-class Weitzner/make ccd a class HUZZAH! :camel: The integration test changes are plentiful and totally expected. If your code is affected and you are concerned, shoot me an email.

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branch: master 「№57199」
Commited by: Rebecca Alford
GitHub commit link: 「df5c39b8ba32fab0」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 15:23:53

Turning off the membrane relax 2 test until we can figure out what is going on. Jason labonte fully endorses not pre-testing this commit before pushing to master ;)

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branch: master 「№57198」
Commited by: Labonte
GitHub commit link: 「266fd4cf73c331db」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 15:11:01

Carbohydrates: adding CHARGE and BOND_TYPE records to sialic acid topology files

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branch: master 「№57197」
Commited by: Sergey Lyskov
GitHub commit link: 「d4e7d5ec5872c6be」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 15:09:07

PyRosetta. Adding type alias for gnu vector<bool> implementation.

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branch: master 「№57196」
Commited by: Labonte
GitHub commit link: 「de3b815d26f626b2」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 13:53:56

Carbohydrates: adding VIRTUAL_SHADOW lines to sugar topology files

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branch: master 「№57195」
Commited by: Luki Goldschmidt
GitHub commit link: 「989d1189896b66e3」 「№61」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 11:24:50

Merge pull request #61 from RosettaCommons/luki-mbi/rosetta_scripts_include Adding file includes to RosettaScripts. This addition is intended to help break up long RosettaScripts protocols into reusable code blocks or modules, which live in separate XML files. Multi-level includes and variable substitution are supported.

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branch: master 「№57194」
Commited by: sarel
GitHub commit link: 「93ede97231efe9da」
Difference from previous tested commit:  code diff
Commit date: 2014-08-15 04:16:57

removing CircularPermutationFinder dependency on TMalign. The filter is currently not working as intended. Fix will be committed later

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branch: master 「№57193」
Commited by: Sergey Lyskov
GitHub commit link: 「988e8c339210c532」
Difference from previous tested commit:  code diff
Commit date: 2014-08-14 16:10:44

Commenting out AtomID_Map_bool for now until i figure out whats going with Windows build

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branch: master 「№57192」
Commited by: Sergey Lyskov
GitHub commit link: 「ca633b0573df73f2」
Difference from previous tested commit:  code diff
Commit date: 2014-08-14 13:49:56

PyRosetta. Adding bindings for AtomID_Map_bool and AtomID_Map_Real classes.

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branch: master 「№57191」
Commited by: Sergey Lyskov
GitHub commit link: 「3d111b7d6dfd80e7」
Difference from previous tested commit:  code diff
Commit date: 2014-08-14 13:14:56

Benchmark scripts. Reversing order of diff arguments in regression tests comparison functions to make logs less confusing.

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branch: master 「№57190」
Commited by: Andrew Watkins
GitHub commit link: 「bdef871ea0f9cfd3」
Difference from previous tested commit:  code diff
Commit date: 2014-08-14 00:30:00

Reverting disulfide changes until they can be done with better understood side effects

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branch: master 「№57189」
Commited by: Rhiju Das
GitHub commit link: 「8502f321efaacd0f」 「№63」
Difference from previous tested commit:  code diff
Commit date: 2014-08-13 23:13:33

Merge pull request #63 from RosettaCommons/daslab Daslab -- restoration of efficient protein stepwise monte carlo

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