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branch: master 「№59092」
Commited by: Andrew Leaver-Fay
GitHub commit link: 「d4f490cc5c888568」
Difference from previous tested commit:  code diff
Commit date: 2016-11-17 15:39:34

Reverting yet another mid-commit-freeze commit to master

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branch: master 「№59091」
Commited by: Sergey O
GitHub commit link: 「1dafd4e339d57e5a」
Difference from previous tested commit:  code diff
Commit date: 2016-11-17 00:37:09

Update SingleFragmentMover.cc Adding option to the SingleFragmentMover to control the number of fragments to read in per position. No option defaults to default behavior of loading all fragments from the input fragment file.

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branch: master 「№59090」
Commited by: Andrew Watkins
GitHub commit link: 「019edfd3a378d320」 「№1806」
Difference from previous tested commit:  code diff
Commit date: 2016-11-16 15:51:17

Merge pull request #1806 from RosettaCommons/revert-1764-hahnbeom/move_cartesian_ddg_to_public Revert "Moving Yuan and Phil's cartesian_ddg protocol from pilot/wendao/ to p…"

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branch: master 「№59089」
Commited by: Hahnbeom Park
GitHub commit link: 「c0cdb22e75bd2dbd」 「№1764」
Difference from previous tested commit:  code diff
Commit date: 2016-11-16 15:50:19

Merge pull request #1764 from RosettaCommons/hahnbeom/move_cartesian_ddg_to_public Moving Yuan and Phil's cartesian_ddg protocol from pilot/wendao/ to p…

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branch: master 「№59088」
Commited by: Hahnbeom Park
GitHub commit link: 「c0119b06ba84bbca」 「№1803」
Difference from previous tested commit:  code diff
Commit date: 2016-11-15 19:39:09

Merge pull request #1803 from RosettaCommons/hahnbeom/lkball_fix fixing "cannot find water builder" issue with NCAAs

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branch: master 「№59087」
Commited by: Vikram K. Mulligan
GitHub commit link: 「81bbfee9265126b6」 「№1793」
Difference from previous tested commit:  code diff
Commit date: 2016-11-13 22:05:12

Merge pull request #1793 from RosettaCommons/revert-1621-vmullig/fix_icc16 Revert "Fix additional issues to allow compilation with icc 16.0.2". I forgot about the XRW commit freeze. Apologies.

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branch: master 「№59086」
Commited by: Vikram K. Mulligan
GitHub commit link: 「47669d9d2e9f659f」 「№1621」
Difference from previous tested commit:  code diff
Commit date: 2016-11-13 22:01:10

Merge pull request #1621 from RosettaCommons/vmullig/fix_icc16 Fix additional issues to allow compilation with icc 16.0.2. This doesn't fix everything, yet, but gets us closer to being able to compile with icc. No test changes expected.

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branch: master 「№59085」
Commited by: Rhiju Das
GitHub commit link: 「89d906968664951d」 「№1790」
Difference from previous tested commit:  code diff
Commit date: 2016-11-13 15:18:49

Merge pull request #1790 from RosettaCommons/rhiju/myosinRNPmodeling2 Rhiju/myosinRNPmodeling2 only rna/stepwise tests change, and they are expected.

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branch: master 「№59084」
Commited by: Rhiju Das
GitHub commit link: 「671408aea0df11f5」 「№1763」
Difference from previous tested commit:  code diff
Commit date: 2016-11-13 05:40:23

Merge pull request #1763 from RosettaCommons/rhiju/myosinRNPmodeling Modeling RNA-controllable myosin motor Confirmed that integration test changes are aesthetic.

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branch: master 「№59083」
Commited by: Scott Boyken
GitHub commit link: 「ae02d6ec16ffab62」 「№1782」
Difference from previous tested commit:  code diff
Commit date: 2016-11-11 20:43:39

Merge pull request #1782 from RosettaCommons/sboyken/fix_combining_networks fixing bug with combining multiple networks in HBNetStapleInterface and commenting line 1824 in HBNet.cc (right after break) that was causing cppcheck failure; cppcheck test now passes

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branch: master 「№59082」
Commited by: Sergey Lyskov
GitHub commit link: 「e9787889336be44d」 「№1787」
Difference from previous tested commit:  code diff
Commit date: 2016-11-11 17:20:42

Merge pull request #1787 from RosettaCommons/sergey/binder Refactoring default-return-policies. Separating configs options for static and member functions so different policies could be specified. This should take care of numeric.random.rg() bug.

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branch: master 「№59081」
Commited by: Brian Weitzner
GitHub commit link: 「ec64f3a8f95a5816」 「№1773」
Difference from previous tested commit:  code diff
Commit date: 2016-11-11 16:38:31

Merge pull request #1773 from RosettaCommons/weitzner/expand_pyrosetta_toolbox Expand PyRosetta toolbox

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branch: master 「№59080」
Commited by: Andrew Watkins
GitHub commit link: 「22f983597f1fced5」 「№1788」
Difference from previous tested commit:  code diff
Commit date: 2016-11-11 15:52:19

Merge pull request #1788 from RosettaCommons/everyday847/fix_thermal_sampler_integration_test Fix the thermal_sampler integration test

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branch: master 「№59079」
Commited by: Rocco Moretti
GitHub commit link: 「9930c969f358257a」 「№1770」
Difference from previous tested commit:  code diff
Commit date: 2016-11-11 10:13:22

Merge pull request #1770 from RosettaCommons/roccomoretti/residue_load_debug Add additional debugging information to help figure out why your protein isn't loading. (i.e. when Rosetta can't find the appropriate ResidueType.) Integration test changes expected in those integration tests with debug-level output.

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branch: master 「№59078」
Commited by: Sergey Lyskov
GitHub commit link: 「a65c886a06746e8f」 「№1785」
Difference from previous tested commit:  code diff
Commit date: 2016-11-10 23:14:18

Merge pull request #1785 from RosettaCommons/sergey/binder Updating PyRosetta. Fixing typo in build.py (thanks to @jadolfbr for finding this!) Adding extra check into setup script so it refuse to run if used from other than ‘setup’ dir.

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branch: master 「№59077」
Commited by: Benjamin Basanta
GitHub commit link: 「0625d71eff37ee13」 「№1783」
Difference from previous tested commit:  code diff
Commit date: 2016-11-10 22:50:05

Merge pull request #1783 from RosettaCommons/basantab/motif_stuff_small_fix Small fix on motif_hash_stuff.cc

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