Pushed Revisions

branch: master 「№59124」
Commited by: Sergey Lyskov
GitHub commit link: 「8979c6b759b3fe50」「№1829」
Difference from previous tested commit: code diff
Commit date: 2016-11-30 16:55:09

Merge pull request #1829 from RosettaCommons/sergey/f Fixing antibody grafting filtering code so it conformed to C++11 STL standard.

branch: master 「№59123」
Commited by: Xiyao Long
GitHub commit link: 「2e7c0c4200e7564c」「№1828」
Difference from previous tested commit: code diff
Commit date: 2016-11-30 15:43:27

Merge pull request #1828 from RosettaCommons/xlong2/new_pymol_luxury_methods Xlong2/new pymol luxury methods

branch: master 「№59122」
Commited by: Sergey Lyskov
GitHub commit link: 「5dfa57b58fc3416a」「№1804」
Difference from previous tested commit: code diff
Commit date: 2016-11-30 15:18:40

Merge pull request #1804 from RosettaCommons/sergey/binder PyRosetta. Updating Binder. Fixing workshop-5 test in debug mode. Updating Binder self-tests.

branch: master 「№59121」
Commited by: Brian D. Weitzner
GitHub commit link: 「3cf93db139d42730」
Difference from previous tested commit: code diff
Commit date: 2016-11-30 11:33:36

branch: master 「№59120」
Commited by: Andrew Watkins
GitHub commit link: 「3a8ef4dc60a59c63」「№1826」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 22:51:43

Merge pull request #1826 from RosettaCommons/everyday847/cleanup_to_prepare_for_bp_efficiency Clean up some code in preparation for bp_efficiency merge

branch: master 「№59119」
Commited by: Andrew Watkins
GitHub commit link: 「f7cc463ee2677f21」「№1823」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 20:39:25

Merge pull request #1823 from RosettaCommons/everyday847/secstruct_string_todo Minor updates to internal representation of secondary structure

branch: master 「№59118」
Commited by: Vikram K. Mulligan
GitHub commit link: 「65cdb17097b6b1dd」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 20:03:02

branch: master 「№59117」
Commited by: Brian D. Weitzner
GitHub commit link: 「d196e56c75a4a10a」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 18:46:52

branch: master 「№59116」
Commited by: Andrew Watkins
GitHub commit link: 「a026a5f35cf5eb16」「№1827」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 17:07:28

Merge pull request #1827 from RosettaCommons/everyday847/fix_RNA_Info_accesses Ensure that we only bind nonnull RNA_Info to a reference

branch: master 「№59115」
Commited by: Frank DiMaio
GitHub commit link: 「1f81fcd2fbd05a97」「№1805」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 13:01:02

Merge pull request #1805 from RosettaCommons/dimaio/beta_nov16 This PR includes a number of updates necessary for the latest beta energy function, beta_nov16. The flag -beta now points to this variant. A full description of the changes is available on the wiki (https://www.rosettacommons.org/docs/wiki/Updates-beta-nov16).

branch: master 「№59114」
Commited by: Rhiju Das
GitHub commit link: 「601cc443b87a8e5e」「№1820」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 11:08:24

branch: master 「№59113」
Commited by: Rocco Moretti
GitHub commit link: 「2c4a041304999bd6」「№1815」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 10:48:29

Merge pull request #1815 from RosettaCommons/roccomoretti/fix_integration_unicode Adjust how unicode encode/decode works on benchmark integration test. A previous fix got the order of encode/decode wrong. This commit changes how the benchmark server tests handle unicode. Specifically, I'm attempting to use the recommended decode/encode at input/output approach. That is, read in files in a Unicode (UTF-8) aware manner, deal with strings internally as Unicode, and then output in a Unicode (UTF-8) aware manner. This should fix the big failure of the integration.tutorials test that's currently happening on master.

branch: master 「№59112」
Commited by: Labonte
GitHub commit link: 「3f624bf64fa2eae1」「№1537」
Difference from previous tested commit: code diff
Commit date: 2016-11-29 02:43:57

Merge pull request #1537 from RosettaCommons/mlnance/add_omega_to_small_mover Carbohydrates: making SmallMover also move omega for sugars In addition, this merge fixes a major bug in how the BackboneMovers selected which mainchain torsions to move for sugars. Shear moves are only meaningful for a tiny subset of sugar cases currently. @mlnance and I will fix the ShearMover in a separate PR. All tests pass.

branch: master 「№59111」
Commited by: Andy Watkins
GitHub commit link: 「b5d5acec0a6ccbf4」
Difference from previous tested commit: code diff
Commit date: 2016-11-28 20:56:58

branch: master 「№59110」
Commited by: Andrew Watkins
GitHub commit link: 「74f332088d6137d5」「№1824」
Difference from previous tested commit: code diff
Commit date: 2016-11-28 20:35:53

Merge pull request #1824 from RosettaCommons/everyday847/add_score_test Add score tests for RNA hi-res and lo-res scoring functions

branch: master 「№59109」
Commited by: Vikram K. Mulligan
GitHub commit link: 「31600371c3fb41c4」
Difference from previous tested commit: code diff
Commit date: 2016-11-28 16:56:58

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled