Pushed Revisions

branch: master 「№59269」
Commited by: Xingjie Pan
GitHub commit link: 「3551f51249653230」「№2014」
Difference from previous tested commit: code diff
Commit date: 2017-02-12 16:57:36

Merge pull request #2014 from RosettaCommons/xingjiepan/local_backbone_mover LocalBackboneMover changes the conformation of backbones between two selected pivot residues. The conformational change is confined within residues between pivot1 - 1 and pivot2 + 1. Residues between the two selected pivots are called a FreePeptide. Currently 4 FreePeptideMovers which alter backbone conformations are implemented: TranslationFreePeptideMover translates the FreePeptide. LongAxisRotationFreePeptideMover rotates the FreePeptide along the axis from its first Ca to its last Ca. ShearFreePeptideMover does a shear move on a residue of the FreePeptide. CircularPermuteFreePeptideMover does a circular permutation on the backbone torsions of the FreePeptide.

branch: master 「№59268」
Commited by: Vikram K. Mulligan
GitHub commit link: 「426654cd806fac3b」
Difference from previous tested commit: code diff
Commit date: 2017-02-11 04:08:35

branch: master 「№59267」
Commited by: Frank DiMaio
GitHub commit link: 「b2d17e54dab126f5」「№2010」
Difference from previous tested commit: code diff
Commit date: 2017-02-10 17:30:46

Merge pull request #2010 from RosettaCommons/dimaio/etable_maxdis_bug Stop Rosetta from crashing when fa_max_dis > 11.5

branch: master 「№59266」
Commited by: P. Douglas Renfrew
GitHub commit link: 「56da0f22f0134e9c」「№2008」
Difference from previous tested commit: code diff
Commit date: 2017-02-09 18:07:51

Merge pull request #2008 from RosettaCommons/dougrenfrew/convert_cpp_style_mpi_bindings_to_c_style Dougrenfrew/convert cpp style mpi bindings to c style

branch: master 「№59265」
Commited by: Rocco Moretti
GitHub commit link: 「9693310c19cba936」「№1797」
Difference from previous tested commit: code diff
Commit date: 2017-02-09 00:11:27

Merge pull request #1797 from RosettaCommons/roccomoretti/select_columns Add columns selection script. Add a simple script that obviates the need to write ad-hoc awk scripts to select out particular columns from Rosetta score files.

branch: master 「№59264」
Commited by: Benjamin Basanta
GitHub commit link: 「b7b07550cb3fa39f」「№2004」
Difference from previous tested commit: code diff
Commit date: 2017-02-08 16:43:13

branch: master 「№59263」
Commited by: Will Sheffler
GitHub commit link: 「76ca8f5ccee05af1」「№1994」
Difference from previous tested commit: code diff
Commit date: 2017-02-08 08:20:50

Merge pull request #1994 from RosettaCommons/sheffler/baker_pyrosetta minor tweaks to pyrosetta build.py for build on baker systems

branch: master 「№59262」
Commited by: Benjamin Basanta
GitHub commit link: 「a44b19b9e7d4ad88」「№2003」
Difference from previous tested commit: code diff
Commit date: 2017-02-07 19:58:33

Merge pull request #2003 from RosettaCommons/basantab/HelixBendFilter All tests passed. Except for the expected new integration test for this filter.

branch: master 「№59261」
Commited by: Yang Hsia
GitHub commit link: 「75c99db7b48aaa5d」「№2002」
Difference from previous tested commit: code diff
Commit date: 2017-02-07 19:15:48

Merge pull request #2002 from RosettaCommons/yhsia/extract_asym_pose_mover_option Yhsia/extract asym pose mover option

branch: master 「№59260」
Commited by: Benjamin Basanta
GitHub commit link: 「f9b4b50a2d264fa9」「№2001」
Difference from previous tested commit: code diff
Commit date: 2017-02-07 13:30:13

Merge pull request #2001 from RosettaCommons/basantab/SecondaryStructureFilter_add_treatLasD Added a new option for this filter: treat_L_as_D, for cases where a blueprint is being used as reference and loops are being detected as H or E by DSSP. Also, created an integration test for this filter. All integration tests are woking as expected.

branch: master 「№59259」
Commited by: Benjamin Basanta
GitHub commit link: 「d5e4b1003010cc0a」「№2000」
Difference from previous tested commit: code diff
Commit date: 2017-02-06 21:10:43

Merge pull request #2000 from RosettaCommons/basantab/StrandCurvatureByLevels All tests passed, except for the expected new test added for this filter

branch: master 「№59258」
Commited by: Rhiju Das
GitHub commit link: 「4d11fdfa2132fc33」「№1996」
Difference from previous tested commit: code diff
Commit date: 2017-02-06 15:14:17

Merge pull request #1996 from RosettaCommons/rhiju/towards_better_loop_close printing out nucleotide-to-nucleotide jump info in rna fragment assembly only test changes were broken before.

branch: master 「№59257」
Commited by: Rocco Moretti
GitHub commit link: 「04df72ad40cc7487」「№1983」
Difference from previous tested commit: code diff
Commit date: 2017-02-06 10:54:18

Merge pull request #1983 from RosettaCommons/roccomoretti/update_sqlite Update SQLite code to the most recent version: 3.16.2 The version of SQLite we had in external (3.7.4) has a number of issues which are detected by the Undefined Behavior Sanitizer (ubsan) tests. Taking a closer look, this looked to definitely be a deficiency in SQLite 3.7.4, rather than how we were using it. Updating to the most recent SQLite version appears to fix these issues. Some small changes were needed in the SandwichFeatures code to properly order results -- SQL does not require that results be in any particular order, but SandwichFeatures was taking advantage of the fact that SQLite 3.7.4 (but not 3.16.2) ordered the results in a consistent manner.

branch: master 「№59256」
Commited by: Rocco Moretti
GitHub commit link: 「ff69ce976ba9a496」「№1991」
Difference from previous tested commit: code diff
Commit date: 2017-02-03 17:35:15

Merge pull request #1991 from RosettaCommons/roccomoretti/pdbrotamers_empty_check Add error checking to PDB_ROTAMERS loading. If the file exists, but contains junk, pop up an error instead of crashing with a divide by zero crash.

branch: master 「№59255」
Commited by: Yang Hsia
GitHub commit link: 「169240ee2c56b645」「№1992」
Difference from previous tested commit: code diff
Commit date: 2017-02-03 14:55:33

Merge pull request #1992 from RosettaCommons/yhsia/sc_filter_typo fixed a single typo in the XMLSchema lines of sc_filter.

branch: master 「№59254」
Commited by: Benjamin Basanta
GitHub commit link: 「3aec314fa905d637」「№1993」
Difference from previous tested commit: code diff
Commit date: 2017-02-03 14:12:22

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queued	Queued Test
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comparing	Test results is now comparing with previous results
finished	Test is finished without errors
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