Pushed Revisions

branch: master 「№59397」
Commited by: Brandon Frenz
GitHub commit link: 「ab165a1dbe7950d2」「№2162」
Difference from previous tested commit: code diff
Commit date: 2017-04-10 16:53:48

Merge pull request #2162 from RosettaCommons/bfrenz/RosettaES_buildfix Changed function calls to .residue_cop instead of .residue_op that changed between my previous PR and merge.

branch: master 「№59396」
Commited by: Sergey Lyskov
GitHub commit link: 「56800e6c074a9c7e」「№2164」
Difference from previous tested commit: code diff
Commit date: 2017-04-10 14:55:40

Merge pull request #2164 from RosettaCommons/ui Setting up UI project

branch: master 「№59395」
Commited by: Aliza Rubenstein
GitHub commit link: 「ef96883e15a8fde7」「№106」
Difference from previous tested commit: code diff
Commit date: 2017-04-09 22:02:57

Merge pull request #106 from RosettaCommons/arubenstein/mean_field_alg Implementation of mean-field algorithm to predict rotamer or amino acid probability. Can be used to determine preorganization of residues or predict specificity profile for protein-protein or protein-peptide interactions. All tests pass except ligand_database_io (known to be unstable) and the new tests that I added.

branch: master 「№59394」
Commited by: Andrew Watkins
GitHub commit link: 「f77b42fbdc96687c」「№2149」
Difference from previous tested commit: code diff
Commit date: 2017-04-06 23:48:03

Merge pull request #2149 from RosettaCommons/everyday847/base_pair_classification Base pair classification that extends to modified residues

branch: master 「№59393」
Commited by: Labonte
GitHub commit link: 「0a42a69c6160670a」「№2157」
Difference from previous tested commit: code diff
Commit date: 2017-04-06 17:28:45

Merge pull request #2157 from RosettaCommons/JWLabonte/XRW/LINK_records PDB IO: Stop loading LINK records that cross crystal cells LINK (and SSBOND) records include two codes that allow one to describe a link between atoms in two crystal cells using symmetry operations. To the best of my knowledge, there is no way we can handle this in Rosetta, and I believe it is simply safe to not load in such LINK records. Please see the pull request for a full description. All tests pass, (except for the ligand_database_io test, which is unstable.)

branch: master 「№59392」
Commited by: Rocco Moretti
GitHub commit link: 「f096571efb7f5a09」「№2161」
Difference from previous tested commit: code diff
Commit date: 2017-04-06 17:12:57

Merge pull request #2161 from RosettaCommons/roccomoretti/grid_integration_fixes ScoringGrid Integration Test fixes Some of the integration tests using ScoringGrids had settings which were very sub-optimal. Change these such that they are not so unreasonable. (Though not necessarily "ideal".) Changes to ligand_dock_grid and hts_io integration tests expected.

branch: master 「№59391」
Commited by: Andrew Watkins
GitHub commit link: 「88c567dd8ce26372」「№2156」
Difference from previous tested commit: code diff
Commit date: 2017-04-06 10:59:49

Merge pull request #2156 from RosettaCommons/everyday847/polymeric_ccd Automatically recognize polymeric residues from the CCD

branch: master 「№59390」
Commited by: Vikram K. Mulligan
GitHub commit link: 「9e5746d55be739b7」
Difference from previous tested commit: code diff
Commit date: 2017-04-06 04:34:45

Wow -- master really hasn't been beautified in a while. Beautifying.

branch: master 「№59389」
Commited by: Andrew Watkins
GitHub commit link: 「30c7f16cfba8c4d2」「№2158」
Difference from previous tested commit: code diff
Commit date: 2017-04-06 02:26:26

Merge pull request #2158 from RosettaCommons/revert-2071-bfrenz/RosettaES Revert "Bfrenz/rosetta es"

branch: master 「№59388」
Commited by: Brandon Frenz
GitHub commit link: 「9d4bb75ff0cd2318」「№2071」
Difference from previous tested commit: code diff
Commit date: 2017-04-06 01:19:40

Merge pull request #2071 from RosettaCommons/bfrenz/RosettaES Bfrenz/rosetta es

branch: master 「№59387」
Commited by: Andrea Bazzoli
GitHub commit link: 「b6d3550dc69533b0」「№2155」
Difference from previous tested commit: code diff
Commit date: 2017-04-05 04:34:43

Merge pull request #2155 from RosettaCommons/bazzoli/make_shobuns_public Moves app shobuns from pilot to public/analysis.

branch: master 「№59386」
Commited by: Hahnbeom Park
GitHub commit link: 「543251380bad79f7」「№2153」
Difference from previous tested commit: code diff
Commit date: 2017-04-03 18:40:06

Merge pull request #2153 from RosettaCommons/hpark/more_TMscore_fix Fixing typing issues in d0_ equation change

branch: master 「№59385」
Commited by: Hahnbeom Park
GitHub commit link: 「26a98a5a272912c3」「№2152」
Difference from previous tested commit: code diff
Commit date: 2017-04-03 18:32:17

Merge pull request #2152 from RosettaCommons/hpark/fix_TMscore_d0 Fixing incorrect d0_ in TMscore equation

branch: master 「№59384」
Commited by: Andrew Leaver-Fay
GitHub commit link: 「a5c2c34e9c1e1c10」「№2129」
Difference from previous tested commit: code diff
Commit date: 2017-04-03 16:25:59

Merge pull request #2129 from RosettaCommons/aleaverfay/fix_rtmin_after_setup_for_scoring_for_res_change Adding the residue's datacache to setup_for_minimizing_for_residue I introduced a bug into rtmin after merging in the offort_w_lkball branch (PR 1972) that @fdimaio found. This PR fixes this bug

branch: master 「№59383」
Commited by: David E Kim
GitHub commit link: 「b73a11e825db6ca5」「№2146」
Difference from previous tested commit: code diff
Commit date: 2017-04-03 15:51:11

Merge pull request #2146 from RosettaCommons/davidekim/boinc_android Davidekim/boinc android

branch: master 「№59382」
Commited by: Rhiju Das
GitHub commit link: 「e21a7a02d95d3aa1」「№2140」
Difference from previous tested commit: code diff
Commit date: 2017-04-02 23:39:41

Merge pull request #2140 from RosettaCommons/rhiju/rna_motifs RNA motif annotation/scoring All tests preserved except expected ones. @everyday847 note change to `rna_noncanonical_hairpin` test due to use of `na_analogue()` in `get_base_coordinate_system` in FARFAR base pair and stack scoring.

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled