Pushed Revisions

branch: master 「№57284」
Commited by: gideonla
GitHub commit link: 「c6bc9e7ad0ee30e5」
Difference from previous tested commit: code diff
Commit date: 2014-09-15 11:44:30

In Splice mover I corrected an error in Splice in. Specifically, if skip_alignment is false (default) then from_res and to_res are read from the torsion db file I changed the Splice in integration test accordingly to account for this change

branch: master 「№57283」
Commited by: Rocco Moretti
GitHub commit link: 「7ca8aa2f1cb1d71a」
Difference from previous tested commit: code diff
Commit date: 2014-09-15 10:11:26

Cherrypick extras=cxx11 settings from luki-mpi/pointer-rewrite (Modulo the pointer defines.) This should allow the cxx11 build on the test server to at least start to build, although without the cxx11 pointer changes

branch: master 「№57282」
Commited by: jonathaw
GitHub commit link: 「08dbdc1cac329635」
Difference from previous tested commit: code diff
Commit date: 2014-09-15 05:47:20

branch: master 「№57281」
Commited by: Christoffer Norn
GitHub commit link: 「aaac78373532e68a」
Difference from previous tested commit: code diff
Commit date: 2014-09-14 17:16:52

branch: master 「№57280」
Commited by: Vikram K. Mulligan
GitHub commit link: 「71c44419ffc12ee4」「№88」
Difference from previous tested commit: code diff
Commit date: 2014-09-14 15:15:49

Merge pull request #88 from RosettaCommons/vmullig/fix_master_malarkey This reinstates the merge of vmullig/cycpep with master. This merge does the following: --Updates GeneralizedKIC with new features (making it match the documented features in the help wiki). --Brings in some tweaks to BBG that Yuan made to make BBG work with GenKIC. --Makes one small tweak to random phi/psi generation in Rama to restore functionality for D-amino acids. --Adds a unit test for GeneralizedKIC (important prior to the owning pointer switchover!) Test failures: --cxx11 tests (expected to fail) --a few integration tests that were already failing to run

branch: master 「№57279」
Commited by: sarel
GitHub commit link: 「c1e3e9204ebf825e」
Difference from previous tested commit: code diff
Commit date: 2014-09-14 02:47:31

testing branching. Don't know why Sergey's python bindings are showing up here. Merge remote branch 'origin/master' into AddFoldUnit_changes

branch: master 「№57278」
Commited by: Sergey Lyskov
GitHub commit link: 「c042de75f1b799fa」
Difference from previous tested commit: code diff
Commit date: 2014-09-13 20:42:56

branch: master 「№57277」
Commited by: Sergey Lyskov
GitHub commit link: 「5279134f1b0cd9b7」
Difference from previous tested commit: code diff
Commit date: 2014-09-13 13:11:18

branch: master 「№57276」
Commited by: Vikram K. Mulligan
GitHub commit link: 「c6251f499eb88d67」
Difference from previous tested commit: code diff
Commit date: 2014-09-13 05:00:30

Reverting everything that has happened since 698e461ad265a541. At this point, the master branch should be exactly where it was prior to the merge of the JK-lab branch with master. The following should now happen: --bazzoli should fix the JK-lab branch in a branch, and test it by submitting SHAs to the test server (rather than testing it by merging with master over and over) --I'll double-check that the broken Windows PyRosetta build was not due to my changes in vmullig/cycpep, and if my branch is good to go, I'll reinstate its merge with master. (Note that I had temporarily reinstated the merge of my vmullig/cycpep branch in this branch, but have now rolled that back, so no changes have occurred since 698e461ad265a541).

branch: master 「№57275」
Commited by: bazzoli
GitHub commit link: 「84c615e25c952952」
Difference from previous tested commit: code diff
Commit date: 2014-09-13 01:50:13

branch: master 「№57274」
Commited by: Sergey Lyskov
GitHub commit link: 「a35694eb8b597b44」「№87」
Difference from previous tested commit: code diff
Commit date: 2014-09-12 23:56:10

Merge pull request #87 from RosettaCommons/revert-81-vmullig/cycpep Revert "Merge vmullig/cycpep (containing updates to GeneralizedKIC) into...", #87 r57271 until windows PyRosetta issue is resolved

branch: master 「№57273」
Commited by: bazzoli
GitHub commit link: 「6aead4d0e6505494」
Difference from previous tested commit: code diff
Commit date: 2014-09-12 22:22:14

branch: master 「№57272」
Commited by: bazzoli
GitHub commit link: 「f31f750638f291fe」
Difference from previous tested commit: code diff
Commit date: 2014-09-12 22:15:23

branch: master 「№57271」
Commited by: Vikram K. Mulligan
GitHub commit link: 「94ef1e69ad8b505a」「№81」
Difference from previous tested commit: code diff
Commit date: 2014-09-12 21:50:09

Merge pull request #81 from RosettaCommons/vmullig/cycpep Merge vmullig/cycpep (containing updates to GeneralizedKIC) into master This does the following: --Updates GeneralizedKIC with a few new features, such as tail residues (making it match the documented features in the help wiki). --Reduces the default verbosity of GeneralizedKIC a little bit (shifting some stuff to the Debug tracer). --Brings in some tweaks to BBG that Yuan made to make BBG work with GenKIC. --Makes one small tweak to random phi/psi generation in Rama to restore functionality for D-amino acids (now covered by the GenKIC unit test). --Adds a unit test for GeneralizedKIC.

branch: master 「№57270」
Commited by: bazzoli
GitHub commit link: 「da84035144d96088」
Difference from previous tested commit: code diff
Commit date: 2014-09-12 21:29:20

branch: master 「№57269」
Commited by: bazzoli
GitHub commit link: 「45f7e9707e7189b0」
Difference from previous tested commit: code diff
Commit date: 2014-09-12 20:14:19

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled