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branch: master 「№57396」
Commited by: gideonla
GitHub commit link: 「f205ba596fc07172」
Difference from previous tested commit:  code diff
Commit date: 2014-11-03 03:23:43

Restored Splice_out_generic integration test

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branch: master 「№57395」
Commited by: Rhiju Das
GitHub commit link: 「2940cbac7d216064」
Difference from previous tested commit:  code diff
Commit date: 2014-11-02 12:59:45

trying to restore linux.clang unit by adding "using std::abs" at top of file

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branch: master 「№57394」
Commited by: Sergey Lyskov
GitHub commit link: 「c15f6adbab747375」
Difference from previous tested commit:  code diff
Commit date: 2014-11-01 01:21:42

Adding benchmark script for binary release

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branch: master 「№57393」
Commited by: gideonla
GitHub commit link: 「4ed7b930e8111b02」
Difference from previous tested commit:  code diff
Commit date: 2014-10-31 07:59:42

Deleted faulty Splice integration tests

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branch: master 「№57392」
Commited by: Sergey Lyskov
GitHub commit link: 「5c29b695adf6a12e」
Difference from previous tested commit:  code diff
Commit date: 2014-10-31 05:19:55

Adding benchmark script for 'source' rosetta release

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branch: master 「№57391」
Commited by: Frank DiMaio
GitHub commit link: 「339943e07bdd1e4d」
Difference from previous tested commit:  code diff
Commit date: 2014-10-30 18:01:33

A few changes to electron density scoring and the density_tools application. - Reduce the number of times rho_calc is computed in density_tools - Mask used by density tools is always bandlimited - Better treatment of mask radus for high B factor atoms - Fix a small bug in scattering factors where they were always integers - Fix incorrect S scattering and add P scattering params

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branch: master 「№57390」
Commited by: Rocco Moretti
GitHub commit link: 「cd5061af73a4bb3b」 「№149」
Difference from previous tested commit:  code diff
Commit date: 2014-10-30 14:05:37

Merge pull request #149 from RosettaCommons/roccomoretti/exception_fix Fix a few places where we were throwing exceptions which wouldn't be caught by the standard top level EXCN_Base catch. I also changed option system behavior such that running with -help will exit successfully, rather than with an exception.

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branch: master 「№57389」
Commited by: P. Douglas Renfrew
GitHub commit link: 「702b4483488d6dd9」 「№153」
Difference from previous tested commit:  code diff
Commit date: 2014-10-30 13:41:20

Merge pull request #153 from RosettaCommons/dougrenfrew/remove_redundant_suck_scoretype Removing redundant "suck" score name from ScoreTypeManager.cc. SnugDock had a slight trajectory change when I ran the tests locally.

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branch: master 「№57388」
Commited by: nollikai
GitHub commit link: 「415e7b96eda33770」 「№151」
Difference from previous tested commit:  code diff
Commit date: 2014-10-30 11:33:11

Merge pull request #151 from RosettaCommons/nollikai/coupled_moves_update Making some minor changes to coupled_moves protocol output Changes include: 1) adding output_prefix option 2) outputting starting sequence / score prior to Monte Carlo simulation 3) dumping scored pdbs instead of unscored pdbs

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branch: master 「№57387」
Commited by: Shira Warszawski
GitHub commit link: 「7c661966a99b102f」
Difference from previous tested commit:  code diff
Commit date: 2014-10-30 11:21:48

integration test for fuzzy logic design

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branch: master 「№57386」
Commited by: gideonla
GitHub commit link: 「5955413c7252ec9a」
Difference from previous tested commit:  code diff
Commit date: 2014-10-30 11:12:03

Added Splice files to database

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branch: master 「№57385」
Commited by: Rocco Moretti
GitHub commit link: 「a71179feac203066」
Difference from previous tested commit:  code diff
Commit date: 2014-10-30 10:56:44

Fix instance of shared_from_this from stack object LoopRelaxMover was allocating a sub-mover on the stack. The problem is that in the apply of the submover, shared_from_this() was being called, resulting in an error under our new pointer scheme. Allocation was changed to be on the heap rather than on the stack. Thanks to @schaarj for pointing out this issue.

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branch: master 「№57384」
Commited by: Sergey Lyskov
GitHub commit link: 「4d1eaeb0e65fae67」
Difference from previous tested commit:  code diff
Commit date: 2014-10-29 17:27:03

Adding new release_debug_no_symbols build. Adding '-g' flag to release_debug builds. Adding integration.release_debug_no_symbols test.

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branch: master 「№57383」
Commited by: Kale Kundert
GitHub commit link: 「40819eec387bb694」 「№145」
Difference from previous tested commit:  code diff
Commit date: 2014-10-29 13:28:34

Merge pull request #145 from RosettaCommons/kalekundert/abbrev-fragments Add support for abbreviated fragment libraries.

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branch: master 「№57382」
Commited by: Frank DiMaio
GitHub commit link: 「83377b0311ffe579」
Difference from previous tested commit:  code diff
Commit date: 2014-10-28 18:46:49

Bugfix in extract_symm_unit with waters.

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branch: master 「№57381」
Commited by: Rhiju Das
GitHub commit link: 「88c2f247cf3e8e94」
Difference from previous tested commit:  code diff
Commit date: 2014-10-28 17:20:06

Checking in integration test for cs_rosetta_rna.

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