Pushed Revisions

branch: master 「№60920」
Commited by: Andy Watkins
GitHub commit link: 「e3920821cd5a7fbe」「№4076」
Difference from previous tested commit: code diff
Commit date: 2019-09-05 15:19:42

Merge pull request #4076 from RosettaCommons/everyday847/work_on_secstruct_finder_and_protein_erraser hotfix rna_design; other updates

branch: master 「№60919」
Commited by: Vikram K. Mulligan
GitHub commit link: 「fb14b4ba111d12dc」「№4202」
Difference from previous tested commit: code diff
Commit date: 2019-09-04 16:56:19

Merge pull request #4202 from RosettaCommons/vmullig/add_symmetry_error_to_pruneburiedundats_taskop Add an error if someone tries to use the PruneBuriedUnsats task operation with a symmetric pose. This task operation currently does not support symmetry.

branch: master 「№60918」
Commited by: Rebecca Alford
GitHub commit link: 「21343ac494f9dd67」「№4165」
Difference from previous tested commit: code diff
Commit date: 2019-09-04 14:39:21

Merge pull request #4165 from RosettaCommons/rfalford12/mini-fix-color-by-hyd Fixing a bug where the wrong hyd value is used in 'color-by-lipid-type' application

branch: master 「№60917」
Commited by: Jack Maguire
GitHub commit link: 「b91fadfe54b42f1f」「№4199」
Difference from previous tested commit: code diff
Commit date: 2019-09-04 08:30:38

Merge pull request #4199 from RosettaCommons/JackMaguire/KillA2019IntTest Adding a new integration test for KillA2019 before I try to merge #4187 Thanks Vikram for the review!

branch: master 「№60916」
Commited by: Vikram K. Mulligan
GitHub commit link: 「827273b9298b034b」「№4198」
Difference from previous tested commit: code diff
Commit date: 2019-09-03 15:09:35

Merge pull request #4198 from RosettaCommons/vmullig/fix_helical_bundle_predict_output Add proper file output to non-MPI builds of helical_bundle_predict application. I forgot to write a proper file outputter for the helical_bundle_predict application in non-MPI mode. This should correct that, allowing Rosetta silent, PDB, CIF, or MMTF output. @cdbahl @everyday847

branch: master 「№60915」
Commited by: Andy Watkins
GitHub commit link: 「06747ab19af36370」「№4189」
Difference from previous tested commit: code diff
Commit date: 2019-09-03 14:25:21

Merge pull request #4189 from RosettaCommons/everyday847/ui_hotfix Hotfix UI builds

branch: master 「№60914」
Commited by: Vikram K. Mulligan
GitHub commit link: 「38598073b153a823」「№4195」
Difference from previous tested commit: code diff
Commit date: 2019-09-03 13:10:41

Merge pull request #4195 from RosettaCommons/vmullig/shush_helical_bundle_predict Prevent stochastic failures of the helical_bundle_predict integration test. Making the helical_bundle_predict test deterministic. Currently, it fails because different processes do different jobs.

branch: master 「№60913」
Commited by: Vikram K. Mulligan
GitHub commit link: 「7237e1729faa1b75」「№4194」
Difference from previous tested commit: code diff
Commit date: 2019-09-02 01:32:23

Merge pull request #4194 from RosettaCommons/hahnbeom/sfxntest_genpot_fix Fixing sfxn_fingerprint test for genpot_ncaa_hybrid

branch: master 「№60912」
Commited by: Jack Maguire
GitHub commit link: 「c8e4076a15688a42」「№4186」
Difference from previous tested commit: code diff
Commit date: 2019-08-31 08:31:50

Merge pull request #4186 from RosettaCommons/JackMaguire/cleanup_FastRelax_apply Branching off of our discussion from #4184 FastRelax::apply is really long and messy so I'm just combing through and offloading conditional branches to their own methods. It's still pretty long but hopefully this makes it more readable Thanks to Vikram for the review!

branch: master 「№60911」
Commited by: Rocco Moretti
GitHub commit link: 「680f2ab6b774f7c3」「№4185」
Difference from previous tested commit: code diff
Commit date: 2019-08-30 13:07:09

Merge pull request #4185 from RosettaCommons/roccomoretti/fix_enzdes_OVL2 Fix metapatch variant naming issues. The connect metapatches were confused about which variants they said they offered versus which ones they actually applied. Make sure that metapatches say they provide variants which are consistent with the in-code usage of the variants. Also fix up the issue where custom variant types aren't being properly added for metapatches.

branch: master 「№60910」
Commited by: Rocco Moretti
GitHub commit link: 「0b67ec6169956403」「№4188」
Difference from previous tested commit: code diff
Commit date: 2019-08-30 13:01:04

Merge pull request #4188 from RosettaCommons/roccomoretti/fix_mmtf_failures Don't include versioning info in MMTF output for integration tests. PR #4066 added revision logging information to MMTF output which, while good, means that any integration test which has MMTF output has persistent changes. Suppress the inclusion of revision info if we're running under integration tests.

branch: master 「№60909」
Commited by: Rocco Moretti
GitHub commit link: 「7d1268882a71357a」「№4173」
Difference from previous tested commit: code diff
Commit date: 2019-08-29 17:23:58

Merge pull request #4173 from RosettaCommons/roccomoretti/fix_patch_dangling_conn_icoor Attempt to fix (some) issues with the dangling ICOOR connect. (Stopgap fix for issue #4153.) So Add something to SET_POLYMER_CONNECT patch operation to re-do the dangling connections based on ideal xyz geometry and other atoms in the residue type. To work best, this means that the SET_POLYMER_CONNECT should come after SET_ICOOR records in the patch file. This doesn't fix everything, and those patches with issues should probably still be fixed to give a proper ICOOR record.

branch: master 「№60908」
Commited by: Rocco Moretti
GitHub commit link: 「b5ea6d6d4c4e5728」「№4182」
Difference from previous tested commit: code diff
Commit date: 2019-08-29 16:22:21

Merge pull request #4182 from RosettaCommons/roccomoretti/mmtf_integration_facilitate Add MMTF->JSON dumping facility to integration tests. If there's integration test changes to mmtf output, it's somewhat hard to debug. So - taking a cue from the SQLite tests - I'm adding a small utility script which can dump MMTF data into a JSON format. This requires the Python version of the MMTF reader to be installed to properly function, though there's a fall-back if it isn't. (We just don't dump the plaintext version.)

branch: master 「№60907」
Commited by: Jack Maguire
GitHub commit link: 「7017cae3a57e82d9」「№4184」
Difference from previous tested commit: code diff
Commit date: 2019-08-28 22:40:29

Merge pull request #4184 from RosettaCommons/JackMaguire/optE_fast_design Adding an option to run optE with FastDesign. Also adding a relaxscript command "reset_reference", which would be required for optE

branch: master 「№60906」
Commited by: Andy Watkins
GitHub commit link: 「ebee3a9ac4bfcc07」「№4183」
Difference from previous tested commit: code diff
Commit date: 2019-08-28 20:28:39

Merge pull request #4183 from RosettaCommons/everyday847/update_VirtualRootMover Make VirtualRootMover FullModelInfo aware

branch: master 「№60905」
Commited by: Hahnbeom Park
GitHub commit link: 「1f82da148c7705f2」「№4167」
Difference from previous tested commit: code diff
Commit date: 2019-08-28 15:26:10

Merge pull request #4167 from RosettaCommons/hahnbeom/genpot_ncaa_Apr2019 Extending genpot for peptides

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled