Pushed Revisions

branch: master 「№61304」
Commited by: Rocco Moretti
GitHub commit link: 「0d6f90a8cb9fa056」「№4746」
Difference from previous tested commit: code diff
Commit date: 2020-06-04 20:12:24

Merge pull request #4746 from RosettaCommons/roccomoretti/icc_fix Fix ICC test on test server ICC 19 is having issues with the boost::accumulator usage, possibly due to the boost update. I'm not quite sure why it's having the issue, but we can work around it by removing the usage.

branch: master 「№61303」
Commited by: Daniel Paoliello
GitHub commit link: 「f7953865680fdb7f」「№4721」
Difference from previous tested commit: code diff
Commit date: 2020-06-04 11:45:46

Merge pull request #4721 from RosettaCommons/dpaoliello/ndarrayallmerged Update ndarray and Eigen3 externals

branch: master 「№61302」
Commited by: Daniel Farrell
GitHub commit link: 「3445b81a95f95374」
Difference from previous tested commit: code diff
Commit date: 2020-06-03 13:51:48

Fix subelement xml for AlignPDBInfoToSequences (#4763) When I had written the xml interface for APTS I wasn't aware that subelements had to be defined in parse my tag. This was silly, but hopefully this PR fixes that. (previously this Target interface would fail at the XML schema validation check)

branch: master 「№61301」
Commited by: sthyme
GitHub commit link: 「0da2b218d7dc4d11」「№4760」
Difference from previous tested commit: code diff
Commit date: 2020-06-02 13:47:49

Merge pull request #4760 from RosettaCommons/toadlover/fix_restrict_to_DNA_interface Toadlover/fix restrict to dna interface

branch: master 「№61300」
Commited by: Rocco Moretti
GitHub commit link: 「0dd5fba50532c803」「№4758」
Difference from previous tested commit: code diff
Commit date: 2020-06-02 09:25:48

Merge pull request #4758 from RosettaCommons/roccomoretti/master_fixes Quick fixes to master Some issues in master that were easy fixes - beautification, removing a using,and being clear about namespace.

branch: master 「№61299」
Commited by: Jack Maguire
GitHub commit link: 「979cdeee29cb6414」「№4750」
Difference from previous tested commit: code diff
Commit date: 2020-05-31 16:06:04

Merge pull request #4750 from RosettaCommons/JackMaguire/Fix Modernizing code templates with implicit copy constructors and unpublished module boilerplate for the citation manager

branch: master 「№61298」
Commited by: Hahnbeom Park
GitHub commit link: 「1007cfa03a098c7a」「№4735」
Difference from previous tested commit: code diff
Commit date: 2020-05-29 16:22:53

Merge pull request #4735 from RosettaCommons/hahnbeom/gadock_repro fixing GAdock to reproduce original behavior

branch: master 「№61297」
Commited by: Brandon Frenz
GitHub commit link: 「9c2ed7261a0b664c」「№4743」
Difference from previous tested commit: code diff
Commit date: 2020-05-29 15:08:32

Merge pull request #4743 from CyrusBiotechnology/bfrenz/wildtype-opt Added option to refine the wild type structure when running Cartesian DDG with new refactored code.

branch: master 「№61296」
Commited by: Daniel Farrell
GitHub commit link: 「b74224ed075660d3」
Difference from previous tested commit: code diff
Commit date: 2020-05-29 12:13:01

remove 'script_file_specified_' from fastrelax (#4747) This option was unused in FastRelax and throughout rosetta -- therefore it was removed.

branch: master 「№61295」
Commited by: Jeliazko Jeliazkov
GitHub commit link: 「54e4f9e8ae04845c」「№4737」
Difference from previous tested commit: code diff
Commit date: 2020-05-29 12:10:04

Merge pull request #4737 from RosettaCommons/lqtza/fix_ab_graft_sci_b Fix broke ab scientific benchmark due to bad flag

branch: master 「№61294」
Commited by: Rocco Moretti
GitHub commit link: 「235c3e71b2bf3776」「№4732」
Difference from previous tested commit: code diff
Commit date: 2020-05-29 11:22:29

Merge pull request #4732 from RosettaCommons/roccomoretti/cached_type_fix Fix CachableDataType name map. There's been some recent additions to the Pose's CacheableDataType. The issue is that the enum->name map wasn't updated along with it. Curiously, though there's a check for this, it doesn't seem to be exercised by any of the integration or unit tests. Add a unit test which will catch this situation in the future, and fix the current lack of enum->string mapping for the three entries which are lacking it.

branch: master 「№61293」
Commited by: Sergey Lyskov
GitHub commit link: 「336a25efade5b558」「№4744」
Difference from previous tested commit: code diff
Commit date: 2020-05-28 14:51:15

Merge pull request #4744 from RosettaCommons/sergey/f updating `scons` `setup_platforms.py` script so it exit immediately if specified compiler could not be found

branch: master 「№61292」
Commited by: Frank DiMaio
GitHub commit link: 「22f5f7e4a7d392fe」「№4745」
Difference from previous tested commit: code diff
Commit date: 2020-05-28 13:20:20

Merge pull request #4745 from RosettaCommons/dimaio/cartmd_relaxscript Fix error in setting cartesianMD temperature using relax scriptfile

branch: master 「№61291」
Commited by: Daniel Farrell
GitHub commit link: 「fb2d87106711aad8」
Difference from previous tested commit: code diff
Commit date: 2020-05-27 22:07:18

#4736 - rm deprecated build flag from cmake (-ffor-scope) It would appear this -ffor-scope was deprecated in 8.1 according to: https://gcc.gnu.org/onlinedocs/gcc-8.1.0/gcc/Deprecated-Features.html#Deprecated-Features so this should fix most of the cmake/ninja warnings.

branch: master 「№61290」
Commited by: Jack Maguire
GitHub commit link: 「ea704a00977180e1」「№4718」
Difference from previous tested commit: code diff
Commit date: 2020-05-27 14:45:18

Merge pull request #4718 from RosettaCommons/JackMaguire/ResidueIters c++11 range-for support for residue ids

branch: master 「№61289」
Commited by: Jason C. Klima
GitHub commit link: 「0df0399627424fbc」「№4699」
Difference from previous tested commit: code diff
Commit date: 2020-05-26 18:33:30

Merge pull request #4699 from RosettaCommons/revert-4697-revert-4687-klimaj/distributed_logging Revert "Revert "Small fixes to pyrosetta.distributed logging""

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