Pushed Revisions

branch: master 「№61576」
Commited by: Julia Koehler Leman
GitHub commit link: 「30a8373c8bd79ffe」「№5254」
Difference from previous tested commit: code diff
Commit date: 2021-02-27 13:36:23

Merge pull request #5254 from RosettaCommons/jkleman/SciBen_more_fixes Jkleman/sci ben more fixes: fixed RosettaCM test by adjusting cutoffs, fixed glycan structure prediction

branch: master 「№61575」
Commited by: Andy Watkins
GitHub commit link: 「6dfb23ee688c4025」「№5264」
Difference from previous tested commit: code diff
Commit date: 2021-02-27 02:25:26

branch: master 「№61574」
Commited by: Vikram K. Mulligan
GitHub commit link: 「977d187ba6436b5d」「№5263」
Difference from previous tested commit: code diff
Commit date: 2021-02-27 02:20:56

Merge pull request #5263 from RosettaCommons/vmullig/clangfix_deer Fix a small issue in the DEER code that clang-tidy complained about This should fix the clang-tidy test. Tasks: - [x] Make type of inner product explicit.

branch: master 「№61573」
Commited by: Vikram K. Mulligan
GitHub commit link: 「3e5b58908c70d5bd」
Difference from previous tested commit: code diff
Commit date: 2021-02-26 02:41:43

branch: master 「№61572」
Commited by: drhicks1
GitHub commit link: 「d49492bc8f06679f」「№5257」
Difference from previous tested commit: code diff
Commit date: 2021-02-24 20:05:29

Merge PR #5246: Carbohydrate-oriented changes needed before integrating GlycanDock protocol into master Assuming the changes seen in swm_dna_bridge aren't due to this PR as it has been showing changes in previous merges

branch: master 「№61570」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「c988cee989e45992」「№4818」
Difference from previous tested commit: code diff
Commit date: 2021-02-23 13:56:18

Merge pull request #4818 from RosettaCommons/jadolfbr/rabd_updates Thanks to @rahelf and @skelow for identifying these bugs and their aid in fixing them! Bug Fixes ======= - `INCLUDE_ONLY` was not being read, and this was used in the documentation - and should be main CDRSet option. - Fixed issue where the final cluster reported could be different than what the cluster actually was through `identify_cdr_clusters` app - Removed the constructor that takes an ab_info object. ab_info is now always correctly initialized from pose. - This also fixes light_chain not being correctly set from xml/pyrosetta. Optimizations ========== - High Res dock cycles have been greatly reduced to speed up integrated docking and allow more robust protocols. Options are now present to control the first and second cycles of the DockMCM (high-res) protocol in cmd-line,RS, and in code.

branch: master 「№61569」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「5ab5b8b4763fbd16」「№4901」
Difference from previous tested commit: code diff
Commit date: 2021-02-23 13:41:34

Merge pull request #4901 from RosettaCommons/jadolfbr/nbr_res_selector Add a per-residue SimpleMetric, SideChainNeighborCountMetric, to count sidechain neighbors in the same way that LayerDesign works. Refactor LayerSelector to enable the use of the same core code to do the calculations.

branch: master 「№61568」
Commited by: Andy Watkins
GitHub commit link: 「bc36ab47069f898d」「№5234」
Difference from previous tested commit: code diff
Commit date: 2021-02-22 18:12:27

branch: master 「№61567」
Commited by: Julia Koehler Leman
GitHub commit link: 「c48be2695c4ba637」「№5209」
Difference from previous tested commit: code diff
Commit date: 2021-02-21 11:50:06

branch: master 「№61566」
Commited by: Julia Koehler Leman
GitHub commit link: 「b4291eceef636604」「№4208」
Difference from previous tested commit: code diff
Commit date: 2021-02-20 12:03:38

branch: master 「№61565」
Commited by: Rocco Moretti
GitHub commit link: 「d739e36cafca0910」「№5251」
Difference from previous tested commit: code diff
Commit date: 2021-02-19 14:51:50

Merge pull request #5251 from RosettaCommons/roccomoretti/cleanup_code_templates Clean up code templates. There were some issues with the formatting of code templates (stray whitespace, missing quotes).

branch: master 「№61564」
Commited by: Guangfeng Zhou
GitHub commit link: 「2f07551448f5467e」「№4921」
Difference from previous tested commit: code diff
Commit date: 2021-02-19 12:44:35

branch: master 「№61563」
Commited by: Tim Neary
GitHub commit link: 「cbb5a358827b446e」「№5248」
Difference from previous tested commit: code diff
Commit date: 2021-02-19 11:47:53

branch: master 「№61562」
Commited by: Sergey Lyskov
GitHub commit link: 「17f6b5496ee436a4」「№5244」
Difference from previous tested commit: code diff
Commit date: 2021-02-17 17:50:55

branch: master 「№61561」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「edd2dcd21e3bfbf1」「№5227」
Difference from previous tested commit: code diff
Commit date: 2021-02-16 12:40:43

Merge pull request #5227 from RosettaCommons/jadolfbr/update_notebook_header Point notebook version to current, which includes bugfixes in RS integration notebook.

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled