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branch: master 「№61592」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「e9f47978df05d6d2」 「№5294」
Difference from previous tested commit:  code diff
Commit date: 2021-03-19 10:06:15

Merge pull request #5294 from RosettaCommons/jadolfbr/update_notebook_head Update notebook submodule to current HEAD that reflects rabd code changes

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branch: master 「№61591」
Commited by: Vikram K. Mulligan
GitHub commit link: 「907f30c089b3883c」 「№5293」
Difference from previous tested commit:  code diff
Commit date: 2021-03-18 18:57:43

Merge pull request #5293 from RosettaCommons/vmullig/shush_membrane_potential Switching some noisy tracer output in the MembranePotential to debug output. This was likely hurting performance.

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branch: master 「№61590」
Commited by: Sergey Lyskov
GitHub commit link: 「532be1556a070412」 「№5288」
Difference from previous tested commit:  code diff
Commit date: 2021-03-17 21:26:06

Merge pull request #5288 from RosettaCommons/sergey/binder adding PyMOL-Rosetta-relay-client.python2.py script and minor bug fixes

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branch: master 「№61589」
Commited by: Rocco Moretti
GitHub commit link: 「02ff5238ae8d9de0」 「№5284」
Difference from previous tested commit:  code diff
Commit date: 2021-03-17 11:24:25

Merge pull request #5284 from RosettaCommons/roccomoretti/single_random_assert Fix ParsedProtocol with single_random An assert in ParsedProtocol triggers if you use the single_random protocol. The assert was erroneously testing if the number of steps was equal to the number of submovers, which isn't the case for single_random, as it only picks out a single submover.

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branch: master 「№61588」
Commited by: Vikram K. Mulligan
GitHub commit link: 「ff1342dd9a7fa5ae」
Difference from previous tested commit:  code diff
Commit date: 2021-03-16 14:28:08

beautifying

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branch: master 「№61587」
Commited by: Yang Hsia
GitHub commit link: 「c7b20279d543ff37」 「№5275」
Difference from previous tested commit:  code diff
Commit date: 2021-03-14 23:00:57

Merge pull request #5275 from RosettaCommons/yhsia/sym_issues Add asu_only option in DsspMover and LayerSelector to only do calculations on the asymmetric unit to speed up cases with large symmetries.

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branch: master 「№61586」
Commited by: Vikram K. Mulligan
GitHub commit link: 「5ea06dde281daaf8」 「№5228」
Difference from previous tested commit:  code diff
Commit date: 2021-03-14 17:49:50

Merge pull request #5228 from RosettaCommons/vmullig/correct_canonical_spelling Correct spelling of "canonical" in Rosetta source code. Noncannonicals can't be used to repel pirate attacks. Noncanonicals are what we usually mean.

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branch: master 「№61585」
Commited by: Andy Watkins
GitHub commit link: 「ef3ef84b7cbee20c」 「№5274」
Difference from previous tested commit:  code diff
Commit date: 2021-03-11 22:51:08

Merge pull request #5274 from RosettaCommons/everyday847/ncbb_stuff Update some OOP modeling utilities; add sequence to scorefiles

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branch: master 「№61584」
Commited by: Sergey Lyskov
GitHub commit link: 「820d57129386de22」 「№5278」
Difference from previous tested commit:  code diff
Commit date: 2021-03-09 13:21:25

Merge pull request #5278 from RosettaCommons/benchmark updating rsync address for pdb.org archive

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branch: master 「№61583」
Commited by: Sergey Lyskov
GitHub commit link: 「e794d44210b60f05」 「№5258」
Difference from previous tested commit:  code diff
Commit date: 2021-03-08 13:46:03

Merge pull request #5258 from RosettaCommons/sergey/binder adding PyMOL-Rosetta relay scripts

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branch: master 「№61582」
Commited by: Sudhanshu Shanker
GitHub commit link: 「61a18df7426addb9」 「№5241」
Difference from previous tested commit:  code diff
Commit date: 2021-03-08 09:46:28

Merge pull request #5241 from RosettaCommons/SudhanshuShanker/ssgm_only Disulfide support for glycomutagenesis protocol

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branch: master 「№61581」
Commited by: Rocco Moretti
GitHub commit link: 「b60efc3a64649f46」 「№5273」
Difference from previous tested commit:  code diff
Commit date: 2021-03-05 12:30:05

Merge pull request #5273 from RosettaCommons/roccomoretti/inaccurate_g More accurate Inaccurate G! message. This "Error" message really isn't being treated as such. Internally we've been conditioned to ignore it, and recently there's been a number of external users expressing concerns. Turn it down to an Info-level message. It's still present for the developers to use to debug whatever issue it represents, but it hopefully will no longer frighten end users.

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branch: master 「№61580」
Commited by: drhicks1
GitHub commit link: 「d75c33090ac69511」 「№5265」
Difference from previous tested commit:  code diff
Commit date: 2021-03-04 21:31:37

Merge pull request #5265 from RosettaCommons/drhicks1/peptide_cyclize Drhicks1/peptide cyclize

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branch: master 「№61579」
Commited by: Morgan Nance
GitHub commit link: 「dd5dfba03145ff9b」
Difference from previous tested commit:  code diff
Commit date: 2021-03-04 13:59:41

Merge pull request #5262 Option to randomize the Jump residue of partner2 for docking FoldTree setup

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branch: master 「№61578」
Commited by: Rocco Moretti
GitHub commit link: 「289a18160b1ac8e8」 「№5270」
Difference from previous tested commit:  code diff
Commit date: 2021-03-04 10:58:52

Merge pull request #5270 from RosettaCommons/roccomoretti/shell_gcc Remove unneeded shell_gcc line from build system. This was unused and potentially problematic, if the system didn't have gcc present.

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branch: master 「№61577」
Commited by: Julia Koehler Leman
GitHub commit link: 「d0b5bd6d7c6319a6」 「№5260」
Difference from previous tested commit:  code diff
Commit date: 2021-03-03 08:03:01

Merge pull request #5260 from RosettaCommons/AmeyaHarmalkar/docking_scientific_tests Updating docking metrics and plots for docking scientific benchmark, using the CAPRI metrics. Now the readme also explains in detail how this is achieved. THANKS AMEYA!!!

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