Pushed Revisions

branch: master 「№57620」
Commited by: Frank DiMaio
GitHub commit link: 「ced540d1fc11f440」
Difference from previous tested commit: code diff
Commit date: 2015-02-18 14:37:43

branch: master 「№57619」
Commited by: Rocco Moretti
GitHub commit link: 「35fa4716e6eebd4a」
Difference from previous tested commit: code diff
Commit date: 2015-02-18 11:19:27

Alter integration.valgring to put log of failing tests in main page on benchmark server.

branch: master 「№57618」
Commited by: Andrew Leaver-Fay
GitHub commit link: 「7ce029218b332271」
Difference from previous tested commit: code diff
Commit date: 2015-02-18 10:06:41

Fixing a bug in the OnTheFlyInteractionGraph where I was confusing the number of residue types with the number of residue type groups. This fixes the assertion failure in the ligand_motif_design integration test.

branch: master 「№57617」
Commited by: Roland Pache
GitHub commit link: 「8235bdb5731e9dc8」「№316」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 15:54:28

Merge pull request #316 from RosettaCommons/rpache/force_field_ramping_for_KIC Force field ramping for refactored KIC and FragmentKIC, and bugfix for the latter. Adding the flags -loops:ramp_rama and -loops:ramp_fa_rep to the refactored KIC code and fixing a bug in the FragmentKIC code, which had caused a BondAnglePerturber to be used accidentally (a relic from the KIC code refactoring). This commit also enables score term ramping for FragmentKIC. Due to the bugfix, the KIC with fragments integration test is supposed to change.

branch: master 「№57616」
Commited by: Philip Bradley
GitHub commit link: 「739413f29a356351」「№320」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 14:40:37

Merge pull request #320 from RosettaCommons/phbradley/cart_bonded_water_tiny_fix In cart_bonded energy, handle rare case of a virtual penultimate residue...

branch: master 「№57615」
Commited by: Frank DiMaio
GitHub commit link: 「607d11cd5339ca66」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 14:05:35

branch: master 「№57614」
Commited by: Frank DiMaio
GitHub commit link: 「0960c3931b2b6206」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 13:47:07

branch: master 「№57613」
Commited by: Rocco Moretti
GitHub commit link: 「50c20ce9c9d10658」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 12:40:30

Fix ligand_motif_design so that it's correctly flagged as a crash failure.

branch: master 「№57612」
Commited by: sarel
GitHub commit link: 「1900b73f559963f8」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 10:59:36

viewers.cc had a disulfide check that played badly with centroid or centroid->fa transitions in the pose. no test changes expected.

branch: master 「№57611」
Commited by: Andy Watkins
GitHub commit link: 「72d3e99f805110b0」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 08:51:49

branch: master 「№57610」
Commited by: Tom Linsky
GitHub commit link: 「86b9fe158b142b27」「№304」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 05:27:57

Merge pull request #304 from RosettaCommons/tlinsky/hotfix Bugfix to protocols::fldsgn::filters::HelixKinkFilter.cc -- previously, ...

branch: master 「№57609」
Commited by: Tom Linsky
GitHub commit link: 「f32cc7a02bf07e7b」「№132」
Difference from previous tested commit: code diff
Commit date: 2015-02-17 05:27:08

Merge pull request #132 from RosettaCommons/tlinsky/filedata Update FileData to add an additional hook into build_pose_from_pdb_as_is...

branch: master 「№57608」
Commited by: Rocco Moretti
GitHub commit link: 「e9853c37d3a5bcea」「№195」
Difference from previous tested commit: code diff
Commit date: 2015-02-16 22:42:45

Merge pull request #195 from RosettaCommons/roccomoretti/valgrind Valgrind automation scripts Add option to run unit and integration tests with the valgrind memory checker, and hook them into the benchmark system. Simply add "--valgrind" to the unit or integration test scripts to run them under valgrind (assuming you have valgrind installed). This will take a while, but should show memory issues.

branch: master 「№57607」
Commited by: Frank DiMaio
GitHub commit link: 「fdf94fabf897cc9c」
Difference from previous tested commit: code diff
Commit date: 2015-02-15 19:45:00

Adding an option to Coulomb.cc to allow the use of sigmoidal dielectric in fa_elec/fa_grpelec. It is turned on with the flag -elec_sigmoidal_die, and there are three parameters that control its behavior: -elec_sigmoidal_die_D0 : the dielectric at short range -elec_sigmoidal_die_D : the dielectric at long range -elec_sigmoidal_die_S : the transition between the two (higher is faster fade)

branch: master 「№57606」
Commited by: Andrea Bazzoli
GitHub commit link: 「7467bad7aa2e4d47」「№323」
Difference from previous tested commit: code diff
Commit date: 2015-02-15 16:43:25

Merge pull request #323 from RosettaCommons/bazzoli/ppi-weights Added weight file PPI_discrimination.wts.

branch: master 「№57605」
Commited by: Rebecca Alford
GitHub commit link: 「d86661ddd01642a8」「№318」
Difference from previous tested commit: code diff
Commit date: 2015-02-13 19:11:51

Merge pull request #318 from RosettaCommons/rfalford12/delete_extra_memb_etable Removing duplicated non compiling membrane etable from core/scoring/etable

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled