Pushed Revisions

branch: master 「№57684」
Commited by: Rocco Moretti
GitHub commit link: 「bec8e81ee01e79fe」
Difference from previous tested commit: code diff
Commit date: 2015-03-09 20:23:44

branch: master 「№57683」
Commited by: Tom Linsky
GitHub commit link: 「eb7b423d6f30a75c」「№357」
Difference from previous tested commit: code diff
Commit date: 2015-03-09 15:29:56

Merge pull request #357 from RosettaCommons/tlinsky/selectbylayerfix Fix crash in SelectResiduesByLayer when sidechain_neighbors is used with...

branch: master 「№57682」
Commited by: Tom Linsky
GitHub commit link: 「62f7e552dcd1be9c」「№356」
Difference from previous tested commit: code diff
Commit date: 2015-03-09 15:29:01

Merge pull request #356 from RosettaCommons/tlinsky/psipredfix Bugfixes to devel::denovo_design::filters::PsiPredInterface

branch: master 「№57681」
Commited by: Tom Linsky
GitHub commit link: 「12e7bb9a3ff2191d」「№354」
Difference from previous tested commit: code diff
Commit date: 2015-03-09 15:28:29

Merge pull request #354 from RosettaCommons/tlinsky/hotfix Fixed bug where OperateOnResidueSubset could not be used to make customi...

branch: master 「№57680」
Commited by: Sergey Lyskov
GitHub commit link: 「b00349ed6906a6ee」
Difference from previous tested commit: code diff
Commit date: 2015-03-08 19:54:27

branch: master 「№57679」
Commited by: Vikram K. Mulligan
GitHub commit link: 「9109f1768fad4554」「№366」
Difference from previous tested commit: code diff
Commit date: 2015-03-08 18:28:38

Merge pull request #366 from RosettaCommons/vmullig/genkic_sampling Vmullig/genkic sampling Updating the ABBA.bin_params database file with new stats generated by Gaurav. Thanks, Gaurav! This should cause integration test changes in all tests that use mainchain torsion bin transition probabilities. This includes bin_initialization, bin_perturbation, genkic_bin_perturbing, genkic_bin_sampling, and genkic_bin_setting.

branch: master 「№57678」
Commited by: kwikwag
GitHub commit link: 「b9e35b58a84c6aa0」「№367」
Difference from previous tested commit: code diff
Commit date: 2015-03-08 14:39:05

Merge pull request #367 from RosettaCommons/kwikwag/peptiderive-talaris Fixing some issues in PeptiDerive: - fixed flags mix up between dump_cyclic_poses and dump_peptide_pose (PeptideDeriverPoseOutputter) - fixed markdown report listing cyclic peptides as linear peptides - remove redundant separators after tables in markdown - fixed not choosing best cyclizable peptide correctly

branch: master 「№57677」
Commited by: Andrew Watkins
GitHub commit link: 「9d1deb3dcc02dca1」
Difference from previous tested commit: code diff
Commit date: 2015-03-07 16:42:52

Changing benchmark_scale to 5 Rather than chasing individual tests, I think we have to simply average more than 3 trials per test.

branch: master 「№57676」
Commited by: Sergey Lyskov
GitHub commit link: 「6404c17a3693dc34」「№365」
Difference from previous tested commit: code diff
Commit date: 2015-03-07 16:21:45

branch: master 「№57675」
Commited by: Andy Watkins
GitHub commit link: 「b975692fb7ff72e1」
Difference from previous tested commit: code diff
Commit date: 2015-03-07 12:20:55

Additional scoring benchmarks needed more reps. Vaguely attempting to get everything in the 1-2 seconds range if it is below.

branch: master 「№57674」
Commited by: Caleb Geniesse
GitHub commit link: 「2fa5847707ad835a」「№359」
Difference from previous tested commit: code diff
Commit date: 2015-03-07 02:05:41

Merge pull request #359 from RosettaCommons/calebgeniesse/rna_bulge fixing SWM rna_bulge calculation SWA/SWM integration test changes are expected

branch: master 「№57673」
Commited by: Andrew Watkins
GitHub commit link: 「4644b67df9a7d946」
Difference from previous tested commit: code diff
Commit date: 2015-03-06 23:57:56

branch: master 「№57672」
Commited by: Vikram K. Mulligan
GitHub commit link: 「afbe193531b71e6b」「№364」
Difference from previous tested commit: code diff
Commit date: 2015-03-06 19:56:44

Merge pull request #364 from RosettaCommons/vmullig/valgrind_issue Vmullig/valgrind issue I think I've fixed the major issue causing many of my unit and integration tests to fail the Valgrind tests on the test server. It was an issue with order of initialization of variables in the Conformation assignment operator and copy constructor (I think). In the middle of the copy constructor, I was calling a function to which I was passing the new, partially-initialized Conformation object, which was problematic. This has been cleaned up. Testing now. (This does fix all of the unit and integration tests of mine that were being flagged by Valgrind. No unit or integration test changes.)

branch: master 「№57671」
Commited by: Andrew Watkins
GitHub commit link: 「3383555833e7f796」
Difference from previous tested commit: code diff
Commit date: 2015-03-06 19:11:41

branch: master 「№57670」
Commited by: Andrew Watkins
GitHub commit link: 「455658240c1ae36c」
Difference from previous tested commit: code diff
Commit date: 2015-03-06 19:10:01

Update ScoreAnalyticEtable.bench.hh Reversed reduction in number of trials--we were actually encountering a significant figure issue with these. I didn't know because before these always had at least one outlier!

branch: master 「№57669」
Commited by: David Johnson
GitHub commit link: 「45564faa506b7763」
Difference from previous tested commit: code diff
Commit date: 2015-03-06 16:13:36

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled