Pushed Revisions

branch: master 「№59717」
Commited by: Sergey Lyskov
GitHub commit link: 「644519856ca23111」
Difference from previous tested commit: code diff
Commit date: 2017-09-22 21:22:45

Adding mangling of developer email info in git output so it raw email does not appear in test log

branch: master 「№59716」
Commited by: Sergey Lyskov
GitHub commit link: 「97d00e0e2acb6df2」
Difference from previous tested commit: code diff
Commit date: 2017-09-22 20:56:37

branch: master 「№59715」
Commited by: Sergey Lyskov
GitHub commit link: 「0d5f0dd292bf75e6」
Difference from previous tested commit: code diff
Commit date: 2017-09-22 16:55:08

branch: master 「№59714」
Commited by: Sergey Lyskov
GitHub commit link: 「d3ebe63392e6c967」「№2558」
Difference from previous tested commit: code diff
Commit date: 2017-09-22 16:31:00

Merge pull request #2558 from RosettaCommons/benchmark Adding submodule update tests

branch: master 「№59713」
Commited by: Andrew Leaver-Fay
GitHub commit link: 「574c5049374628a1」「№2565」
Difference from previous tested commit: code diff
Commit date: 2017-09-22 09:07:25

Merge pull request #2565 from RosettaCommons/aleaverfay/rs_parser_scripvars_fix parse_rosetta_script application now uses the script_vars option Fixing script-vars issue in parse_rosetta_script and validate_rosetta_script where the RosettaScriptsParser was ignoring the command line options

branch: master 「№59712」
Commited by: Benjamin Basanta
GitHub commit link: 「d6dd2f80ab9a57fe」「№2548」
Difference from previous tested commit: code diff
Commit date: 2017-09-21 18:13:29

Merge pull request #2548 from RosettaCommons/basantab/fix_rotamers_HBNet Fixing bug in HBNet option use_only_input_rot_for_start_res

branch: master 「№59711」
Commited by: Sergey Lyskov
GitHub commit link: 「e8575a8572dd02db」「№2570」
Difference from previous tested commit: code diff
Commit date: 2017-09-21 15:15:35

Merge pull request #2570 from RosettaCommons/sergey/f Updating 'scripts.pyrosetta' test so it add stdout and stderr into subtest logs.

branch: master 「№59710」
Commited by: Brandon Frenz
GitHub commit link: 「792bc27409046bf9」「№2547」
Difference from previous tested commit: code diff
Commit date: 2017-09-21 15:14:32

Merge pull request #2547 from RosettaCommons/bfrenz/cart_bonded_ring_fix Bfrenz/cart bonded ring fix

branch: master 「№59709」
Commited by: Sharon Guffy
GitHub commit link: 「cfe7327c89784a8c」「№2567」
Difference from previous tested commit: code diff
Commit date: 2017-09-20 16:52:47

Merge pull request #2567 from RosettaCommons/guffysl/lmcs_bugfix Guffysl/lmcs bugfix

branch: master 「№59708」
Commited by: Sergey Lyskov
GitHub commit link: 「239b493e96f8f5e4」「№2561」
Difference from previous tested commit: code diff
Commit date: 2017-09-20 16:24:44

Merge pull request #2561 from RosettaCommons/sergey/f Disabling incremental Binder/LLVM rebuild. Updating pyrosetta_scripts submodule.

branch: master 「№59707」
Commited by: Xingjie Pan
GitHub commit link: 「a19ad2ea80d9e9e4」「№2562」
Difference from previous tested commit: code diff
Commit date: 2017-09-19 12:49:00

Merge pull request #2562 from RosettaCommons/xingjiepan/move_SSShapeComplementarityFilter_to_protocols Migrate SSShapeComplementarityFilter from devel to protocols

branch: master 「№59706」
Commited by: Rocco Moretti
GitHub commit link: 「82c1fe4853fb989e」「№2550」
Difference from previous tested commit: code diff
Commit date: 2017-09-18 16:54:56

Merge pull request #2550 from RosettaCommons/roccomoretti/fix_release_unit_tests Fix unit tests in release mode We had some unit tests which were failing when run in release mode. This PR should fix them. This PR also adds a new scons compilation mode, release_symbols, which is release mode with debugging symbols enabled. (This differs from release_debug, which is debug mode with release-mode optimizations turned on. The main difference is whether debug_asserts are active or not.)

branch: master 「№59705」
Commited by: Andy Watkins
GitHub commit link: 「839226a33c427862」「№2544」
Difference from previous tested commit: code diff
Commit date: 2017-09-18 13:39:53

Merge pull request #2544 from RosettaCommons/everyday847/riboswitches Superimpose alignment error caught while doing riboswitch development

branch: master 「№59704」
Commited by: Vikram K. Mulligan
GitHub commit link: 「46dcc1b1c7a82df5」「№2559」
Difference from previous tested commit: code diff
Commit date: 2017-09-16 16:21:44

Merge pull request #2559 from RosettaCommons/vmullig/threadsafe_elec2 Fix a thread safety issue in FA_ElecEnergy method: scratch space was shared between cloned instances The scratch space object was being deep-cloned by the `FA_ElecEnergy::clone()` operation. Now, the operation creates new scratch space. I _think_ this will solve the problem that I'm seeing on Blue Gene by ensuring that the scratch space object is always thread-local. Tasks: - [x] Fix the cloning issue. - [x] Beauty. - [x] Test on Blue Gene/Q. - [x] Check unit tests. - [x] Check integration tests. - [x] Beautify (since master is not beautiful).

branch: master 「№59703」
Commited by: Sergey Lyskov
GitHub commit link: 「4c42bfab1ced584f」
Difference from previous tested commit: code diff
Commit date: 2017-09-16 05:04:58

RosettaAI: Setting rosetta_scripts_scripts submodule to latest origin/master version.

branch: master 「№59702」
Commited by: Jane Roe
GitHub commit link: 「8c81945a41ea4173」
Difference from previous tested commit: code diff
Commit date: 2017-09-15 20:06:08

Legend:

queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled