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branch: master 「№59749」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「4f69c5e4d7ba9b97」 「№2535」
Difference from previous tested commit:  code diff
Commit date: 2017-10-06 12:01:19

Merge pull request #2535 from RosettaCommons/JWLabonte-patch-1 Carbohydrates: adding another xylose .pdb 3-letter code to list (Labonte) and increasing range of auto_detect_logic detection. Updated glycan auto detect unit test.

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branch: master 「№59748」
Commited by: Sergey Lyskov
GitHub commit link: 「5ecad7c2d2d52561」
Difference from previous tested commit:  code diff
Commit date: 2017-10-06 11:16:56

Fixing Mac PyRosetta build

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branch: master 「№59747」
Commited by: Jaume Bonet
GitHub commit link: 「a4bbdaedc17fec35」 「№2600」
Difference from previous tested commit:  code diff
Commit date: 2017-10-06 04:56:10

Merge pull request #2600 from RosettaCommons/jaumebonet/index_selection fixed selection error for ranges from inside the pose to values outside of it when specified as PDB numbering

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branch: master 「№59746」
Commited by: Sebastian Rämisch
GitHub commit link: 「f1d4e157176bd362」 「№2596」
Difference from previous tested commit:  code diff
Commit date: 2017-10-05 22:15:52

Merge pull request #2596 from RosettaCommons/raemisch/symdef_multi_chain update make_symdef_file_denovo.pl

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branch: master 「№59745」
Commited by: Sergey Lyskov
GitHub commit link: 「76889fe2703e2479」 「№2603」
Difference from previous tested commit:  code diff
Commit date: 2017-10-05 19:30:52

Merge pull request #2603 from RosettaCommons/fordas/pyrosetta_macos_cmdline_fix Update pyrosetta build to support macos commandline developer tools.

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branch: master 「№59744」
Commited by: Alexander Ford
GitHub commit link: 「fc469267efc5d186」 「№2605」
Difference from previous tested commit:  code diff
Commit date: 2017-10-05 19:17:55

Merge pull request #2605 from RosettaCommons/fordas/pyrosetta_binder_update Update Binder submodule: per class include support.

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branch: master 「№59743」
Commited by: Brandon Frenz
GitHub commit link: 「d2f4283b22ca58ef」 「№2581」
Difference from previous tested commit:  code diff
Commit date: 2017-10-05 18:42:03

Merge pull request #2581 from RosettaCommons/bfrenz/glycan_hydrogen_fixes Bfrenz/glycan hydrogen fixes

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branch: master 「№59742」
Commited by: Alexander Ford
GitHub commit link: 「89265a5d9478e284」 「№2602」
Difference from previous tested commit:  code diff
Commit date: 2017-10-05 11:27:26

Merge pull request #2602 from RosettaCommons/fordas/cmake_hdf5_support Add hdf5 support to cmake build, extend cmake YCM support.

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branch: master 「№59741」
Commited by: Alexander Ford
GitHub commit link: 「4c40c58e8a801241」 「№2604」
Difference from previous tested commit:  code diff
Commit date: 2017-10-05 11:26:25

Merge pull request #2604 from RosettaCommons/fordas/ndarray_stride_fix Fixup ndarray stride calculation in pybind11 type converter.

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branch: master 「№59740」
Commited by: Sergey Lyskov
GitHub commit link: 「b688dc701c6565e2」
Difference from previous tested commit:  code diff
Commit date: 2017-10-04 18:18:17

Updating checkout procedure of 'beautify' so it more robust

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branch: master 「№59739」
Commited by: Sergey Lyskov
GitHub commit link: 「da7a74970f6c372c」 「№2599」
Difference from previous tested commit:  code diff
Commit date: 2017-10-04 17:08:56

Merge pull request #2599 from RosettaCommons/benchmark Enabling beautification of master branch

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branch: master 「№59738」
Commited by: Sergey Lyskov
GitHub commit link: 「23c605b576cc2f32」 「№2598」
Difference from previous tested commit:  code diff
Commit date: 2017-10-03 18:04:25

Merge pull request #2598 from RosettaCommons/sergey/binder Updating Binder submodule: refactoring to improve performance.

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branch: master 「№59737」
Commited by: Alexander Ford
GitHub commit link: 「d62aaaf2ca17ed1f」 「№2591」
Difference from previous tested commit:  code diff
Commit date: 2017-10-03 11:33:38

Merge pull request #2591 from RosettaCommons/fordas/vim_ycm_completion_update Update ycm_extra_conf to support files without compilation db entries.

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branch: master 「№59736」
Commited by: Alexander Ford
GitHub commit link: 「267b4ca2ab01c981」 「№2590」
Difference from previous tested commit:  code diff
Commit date: 2017-10-03 02:05:42

Merge pull request #2590 from RosettaCommons/fordas/feature/extern_updates Add external external libraries ndarray & tinytimer. Update boost 1_55 library coverage.

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branch: master 「№59735」
Commited by: Emily Wrenbeck
GitHub commit link: 「1b869a4cc1f8c0c4」 「№2594」
Difference from previous tested commit:  code diff
Commit date: 2017-10-02 15:58:38

Merge pull request #2594 from RosettaCommons/ewrenbeck/mutation_scanning Adding filterscan scripts that do not remove mutations with low PSSM …

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branch: master 「№59734」
Commited by: Darwin
GitHub commit link: 「61b0ece44a83dce1」 「№2592」
Difference from previous tested commit:  code diff
Commit date: 2017-10-01 00:36:40

Merge pull request #2592 from RosettaCommons/darwinyfu/minor-ligand New scoring grid for ligand docking, addition of two grid based unit tests

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