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branch: benchmark 「№358」
Commited by: Brian Weitzner
GitHub commit link: 「b467592ce419dd7d」 「№3515」
Difference from previous tested commit:  code diff
Commit date: 2018-09-25 14:23:23

Merge pull request #3515 from RosettaCommons/weitzner/fix_xcode_build Fix Xcode 10 build

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branch: benchmark 「№357」
Commited by: Sergey Lyskov
GitHub commit link: 「a52911c477f2ac7e」
Difference from previous tested commit:  code diff
Commit date: 2018-06-26 14:29:44

updating unicode handling to Python-3

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branch: benchmark 「№356」
Commited by: Sergey Lyskov
GitHub commit link: 「c2208fdd037b4c51」
Difference from previous tested commit:  code diff
Commit date: 2018-06-15 13:45:02

removing additional_protocol_data from PyRosetta release packages

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branch: benchmark 「№355」
Commited by: Sergey Lyskov
GitHub commit link: 「06708f2e74fecb0f」
Difference from previous tested commit:  code diff
Commit date: 2018-06-14 20:33:08

updating package creating script so it skip `.git` files and directories

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branch: benchmark 「№354」
Commited by: Labonte
GitHub commit link: 「450949e481542459」 「№3258」
Difference from previous tested commit:  code diff
Commit date: 2018-06-13 13:16:10

Merge pull request #3258 from RosettaCommons/JWLabonte/sugars/output Pose IO: Providing option to force Rosetta to assign ligands unique .pdb chainIDs This merge will provide an option, `-output_ligands_as_separate_chains`, that will cause Rosetta to reassign the `.pdb` `chainID` of a ligand when it shares the same `chainID` as one of the peptide chains. Very often in `.pdb` structures, there might be, for example, a homodimeric protein with chains A and B in addition to a cofactors or product molecules, _etc.,_ that are also labeled as chains A and B. Using this option forces Rosetta to output them instead as belonging to separate chains, for example, C, D, _etc._ This new option will _not_ reassign a chain to a PTM, such as glycosylation; that is, saccharide or other residues that are attached covalently to a peptide chain will maintain the same `chainID` as the peptide chain to which they are attached. All tests pass.

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branch: benchmark 「№353」
Commited by: Sergey Lyskov
GitHub commit link: 「f68618a3f00de258」
Difference from previous tested commit:  code diff
Commit date: 2018-04-14 21:26:55

adding workaround for obscure bug in Python-3.* installers

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branch: benchmark 「№352」
Commited by: Sergey Lyskov
GitHub commit link: 「8071e7db381797f9」
Difference from previous tested commit:  code diff
Commit date: 2018-04-12 00:42:46

fixing release and code_quality scripts

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branch: benchmark 「№351」
Commited by: Sergey Lyskov
GitHub commit link: 「513e6f9fdf29d67f」
Difference from previous tested commit:  code diff
Commit date: 2018-03-31 15:45:56

upgrading Python versions and fixing `release` testing script

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branch: benchmark 「№350」
Commited by: Sergey Lyskov
GitHub commit link: 「31d5254872569f4c」
Difference from previous tested commit:  code diff
Commit date: 2018-03-26 12:18:15

fixing performance and profile test scripts

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branch: benchmark 「№349」
Commited by: Sergey Lyskov
GitHub commit link: 「1065d22ad584faad」
Difference from previous tested commit:  code diff
Commit date: 2018-03-24 13:22:15

fixing PyRosetta4 and code_quality benchmark scripts

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branch: benchmark 「№348」
Commited by: Sergey Lyskov
GitHub commit link: 「9a73d93c1ac56774」
Difference from previous tested commit:  code diff
Commit date: 2018-03-23 11:08:58

fixing parallel.py and sfxn_fingerprint.py scripts

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branch: benchmark 「№347」
Commited by: Sergey Lyskov
GitHub commit link: 「54b633f0cc723fc4」
Difference from previous tested commit:  code diff
Commit date: 2018-03-22 18:33:17

fixing unit test script

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branch: benchmark 「№346」
Commited by: Sergey Lyskov
GitHub commit link: 「b0a131b3e84a6ab7」
Difference from previous tested commit:  code diff
Commit date: 2018-03-22 16:52:04

fixing scripts.py test script

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branch: benchmark 「№345」
Commited by: Sergey Lyskov
GitHub commit link: 「b5ec83aaf68b55cc」
Difference from previous tested commit:  code diff
Commit date: 2018-03-21 15:09:23

fixing `execute`

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branch: benchmark 「№344」
Commited by: Sergey Lyskov
GitHub commit link: 「0f31eace8c4052b5」
Difference from previous tested commit:  code diff
Commit date: 2018-03-20 19:56:10

adding add_message_and_command_line_to_output to `execute` function

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branch: benchmark 「№343」
Commited by: Sergey Lyskov
GitHub commit link: 「9f40f713baa03d2c」
Difference from previous tested commit:  code diff
Commit date: 2018-03-20 19:53:37

fixing Python installing procedure

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