Pushed Revisions

branch: master 「№59541」
Commited by: Frank DiMaio
GitHub commit link: 「a5ed37f352856a54」
Difference from previous tested commit: code diff
Commit date: 2017-06-15 18:56:02

Modify Ca params file for centroid to be consitent with fullatom (enabling CA sites to be modelled in RosettaCM)

branch: master 「№59540」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「1d20429ae76bc631」「№2331」
Difference from previous tested commit: code diff
Commit date: 2017-06-14 12:03:45

Merge pull request #2331 from RosettaCommons/jadolfbr/template_fixes Jadolfbr/template fixes A few small fixes for app templates as found by @smlewis (Also adds print function from future as Python3 rocks) This addresses #2327

branch: master 「№59539」
Commited by: Andrew Watkins
GitHub commit link: 「36570699c26d01ed」「№2197」
Difference from previous tested commit: code diff
Commit date: 2017-06-14 01:08:58

Merge pull request #2197 from RosettaCommons/everyday847/sidechain_rebuild_hotfix Avoid weird mainchain condition

branch: master 「№59538」
Commited by: raemisch
GitHub commit link: 「7880b6f57ecb65d6」
Difference from previous tested commit: code diff
Commit date: 2017-06-13 17:19:00

Removed assumed connections between non-polymers and glycans. There was a problem when a non-polymeric HETATM (metals e.t.c.) appears before a protein-bound glycan in the pdb file. There was a check whether something is NOT a lower terminus, but also the previous residue is not a polymer. If that is true, Rosetta makes that residue a terminus, because a bond non-polymer -> polymer doesn't make sense. I added another condition, which checks if residue i has a lower_connect to another polymer to get around that.

branch: master 「№59537」
Commited by: Andrew Watkins
GitHub commit link: 「88bbe75510a117f1」「№2324」
Difference from previous tested commit: code diff
Commit date: 2017-06-12 15:04:59

Merge pull request #2324 from RosettaCommons/everyday847/goto_slayer remove protocols gotos

branch: master 「№59536」
Commited by: Andy Watkins
GitHub commit link: 「556e443c5bb51729」
Difference from previous tested commit: code diff
Commit date: 2017-06-12 10:03:10

Andy Watkins 7 years
Sorry for the oblique comment here -- I'd done a pull and push in an unexpected order. This merge should fix up the UTracers inadvertently changed during a prior merge. Sorry friends!

branch: master 「№59535」
Commited by: Orly Marcu
GitHub commit link: 「6bbe2f8b19f5fa7e」「№2319」
Difference from previous tested commit: code diff
Commit date: 2017-06-12 05:55:21

Merge pull request #2319 from RosettaCommons/orlypolo/fix-score-test change ScoreTest back to its previous version

branch: master 「№59534」
Commited by: Andrew Watkins
GitHub commit link: 「f4b379542681ffde」「№2323」
Difference from previous tested commit: code diff
Commit date: 2017-06-12 01:38:05

Merge pull request #2323 from RosettaCommons/everyday847/sensible_link_output Turn on link record output

branch: master 「№59533」
Commited by: Sergey Lyskov
GitHub commit link: 「c4528b378eeb40eb」
Difference from previous tested commit: code diff
Commit date: 2017-06-11 17:07:00

branch: master 「№59532」
Commited by: Sergey Lyskov
GitHub commit link: 「1890fbfa458430c3」
Difference from previous tested commit: code diff
Commit date: 2017-06-11 00:38:30

Re-adding Binder submodule that was accidentally deleted by @orlypolo

branch: master 「№59531」
Commited by: Sergey Lyskov
GitHub commit link: 「cfdba7b24f42d4d1」
Difference from previous tested commit: code diff
Commit date: 2017-06-11 00:34:29

Updating PyRosetta build script so it now check if Binder submodule is present

branch: master 「№59530」
Commited by: Andy Watkins
GitHub commit link: 「2d5adb720fcbaa8e」
Difference from previous tested commit: code diff
Commit date: 2017-06-10 17:15:33

branch: master 「№59529」
Commited by: Andy Watkins
GitHub commit link: 「ca452e5f52690211」
Difference from previous tested commit: code diff
Commit date: 2017-06-10 14:03:08

branch: master 「№59528」
Commited by: Andrew Watkins
GitHub commit link: 「4086ca62a9b57d4a」「№2314」
Difference from previous tested commit: code diff
Commit date: 2017-06-10 12:03:36

Merge pull request #2314 from RosettaCommons/everyday847/fix_LD_fadun_equivalence L/D equivalence for fa_dun when upper and lower are ill-defined

branch: master 「№59527」
Commited by: Orly Marcu
GitHub commit link: 「5f7ed586cb326cc7」「№2230」
Difference from previous tested commit: code diff
Commit date: 2017-06-10 07:30:01

Merge pull request #2230 from RosettaCommons/orlypolo/peptiderive-head-to-tail-cyc reformatting handling of candidate cyclic peptide information to allow…

branch: master 「№59526」
Commited by: Frank DiMaio
GitHub commit link: 「62b59070f357d30e」「№2313」
Difference from previous tested commit: code diff
Commit date: 2017-06-09 22:16:42

Merge pull request #2313 from RosettaCommons/dimaio/cartbonded_ncaa Remove an unnecessary check for canonic amino acids in cart_bonded

Legend:

queued	Queued Test
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comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
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