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branch: benchmark 「№582」
Commited by: Sergey Lyskov
GitHub commit link: 「eee90caf6e2ea93d」
Difference from previous tested commit:  code diff
Commit date: 2021-12-01 14:27:20
scientific.docking.debug scientific.docking linux.gcc.python27.self.python linux.gcc.python36.self.python linux.gcc.python37.self.python linux.gcc.python38.self.python linux.gcc.python39.self.python mac.clang.python27.self.python mac.clang.python36.self.python mac.clang.python37.self.python mac.clang.python38.self.python mac.clang.python39.self.python

increasing default memory allocation for serial jobs

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Test: linux.clang.scientific.docking

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branch: benchmark 「№581」
Commited by: Sergey Lyskov
GitHub commit link: 「16b0937f287edcac」
Difference from previous tested commit:  code diff
Commit date: 2021-11-29 15:10:50
scientific.docking.debug scientific.docking linux.gcc.python27.self.python linux.gcc.python36.self.python linux.gcc.python37.self.python linux.gcc.python38.self.python linux.gcc.python39.self.python mac.clang.python27.self.python mac.clang.python36.self.python mac.clang.python37.self.python mac.clang.python38.self.python mac.clang.python39.self.python

updating benchmark.py script

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Test: linux.clang.scientific.docking.debug

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Test: linux.clang.scientific.docking

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branch: benchmark 「№580」
Commited by: Sergey Lyskov
GitHub commit link: 「5479876cf6a62514」
Difference from previous tested commit:  code diff
Commit date: 2021-11-29 14:33:36
linux.gcc.python27.self.python linux.gcc.python36.self.python linux.gcc.python37.self.python linux.gcc.python38.self.python linux.gcc.python39.self.python mac.clang.python27.self.python mac.clang.python36.self.python mac.clang.python37.self.python mac.clang.python38.self.python mac.clang.python39.self.python

updating scripts API version to 1.1

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Test: linux.gcc.python27.self.python

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Test: linux.gcc.python36.self.python

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Test: linux.gcc.python37.self.python

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Test: linux.gcc.python38.self.python

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Test: linux.gcc.python39.self.python

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Test: mac.clang.python27.self.python

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Test: mac.clang.python36.self.python

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Test: mac.clang.python37.self.python

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Test: mac.clang.python38.self.python

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branch: benchmark 「№579」
Commited by: Sergey Lyskov
GitHub commit link: 「299060b71fadcd95」
Difference from previous tested commit:  code diff
Commit date: 2021-11-15 13:52:34
linux.gcc.python27.self.python linux.gcc.python36.self.python linux.gcc.python37.self.python linux.gcc.python38.self.python linux.gcc.python39.self.python mac.clang.python27.self.python mac.clang.python36.self.python mac.clang.python37.self.python mac.clang.python38.self.python mac.clang.python39.self.python

fixing repository_root calculation

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branch: benchmark 「№578」
Commited by: Sergey Lyskov
GitHub commit link: 「2805fcbc089f06ed」
Difference from previous tested commit:  code diff
Commit date: 2021-06-21 17:44:24
unit.ubsan

fixing repository_root calculation

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Test: ubuntu-20.04.gcc.unit.ubsan

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_packer:test_energy_annealing core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:DunbrackEnergyTests:test_dunbrack_cart_deriv_check_partial_flexibility core:DunbrackEnergyTests:test_dunbrack_deriv_check_full_flexibility core:DunbrackEnergyTests:test_dunbrack_deriv_check_partial_flexibility core:DunbrackEnergyTests:test_dunbrack_symm_cart_deriv_check_partial_flexibility core:DunbrackEnergyTests:test_get_bb_bins_range core:DunbrackEnergyTests:test_get_dof_deriv_atoms core:DunbrackEnergyTests:test_peptoid_energy_snap core:EtableEnergyTests:test_default_enmethopts_signal_analytic_etable core:EtableEnergyTests:test_etab_numeric_deriv_check_analytic_version core:EtableEnergyTests:test_etab_numeric_deriv_check_table_version core:EtableEnergyTests:test_etable_cart_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_analytic_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_full_bb_flex_analytic_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_full_bb_flex_table_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_analytic_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_table_version core:EtableEnergyTests:test_etable_symm_cart_derivatives_w_intraresidue_terms_and_partial_bb_flex_analytic_version core:EtableEnergyTests:test_etrable_trie_vs_trie core:EtableEnergyTests:test_eval_intra_residue_energy_w_minimization_data_analytic_version core:EtableEnergyTests:test_eval_intra_residue_energy_w_minimization_data_table_version core:EtableEnergyTests:test_eval_residue_pair_energy_analytic_version core:EtableEnergyTests:test_eval_residue_pair_energy_table_version core:EtableEnergyTests:test_eval_residue_pair_energy_w_minimization_data core:EtableEnergyTests:test_retrieve_etables_from_scoring_manager core:EtableEnergyTests:test_serialize_etable_trie core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate2_analytic_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate2_table_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_full_bb_flexibility_analytic_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_full_bb_flexibility_table_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_partial_bb_flexibility_analytic_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_partial_bb_flexibility_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_and_intraresidue_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_and_intraresidue_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_and_intraresidue_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_and_intraresidue_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_table_version core:FiberDiffractionEnergyTest:test_FiberDiffractionEnergy core:FoldTreeSketch:test_cycle_removal core:FoldTreeSketch:test_one_jump_res_sketch core:FoldTreeSketch:test_simple_res_sketch core:HBNetEnergyTests:test_basic_and_symmetric_scoring core:HBNetEnergyTests:test_linear_scoring core:HBNetEnergyTests:test_log_scoring core:HBNetEnergyTests:test_max_network_size core:HBNetEnergyTests:test_quadratic_scoring core:HBNetEnergyTests:test_sqrt_scoring core:HBondEnergyTests:test_hbond_shift_hbond_energy_functionality core:HBondEnergyTests:test_hbonds_deriv_check_w_full_torsional_flexibility core:HBondEnergyTests:test_hbonds_deriv_check_w_partial_torsional_flexibility core:HBondEnergyTests:test_hbonds_trie_vs_trie_no_bbsc_exclusion core:HBondEnergyTests:test_hbonds_trie_vs_trie_sp2 core:HBondEnergyTests:test_hbonds_trie_vs_trie_standard core:HBondEnergyTests:test_hbonds_w_excluded_bb_sc_interactions core:HBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_full_torsional_flexibility core:HBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_partial_torsional_flexibility core:HBondGraphUtilTests:test_graph_completeness core:HPatchInteractionGraphTests:test_bg_node_2_resid core:HPatchInteractionGraphTests:test_calculate_alt_state_hpatch_score core:HPatchInteractionGraphTests:test_commit_substitution core:HPatchInteractionGraphTests:test_consider_substitution core:HPatchInteractionGraphTests:test_curr_state_exp_hphobes core:HPatchInteractionGraphTests:test_curr_state_hphobes core:HPatchInteractionGraphTests:test_get_energy_current_state_assignment core:HPatchInteractionGraphTests:test_graph_initialization core:HPatchInteractionGraphTests:test_partial_redesign_using_linmem_ig core:HPatchInteractionGraphTests:test_partial_redesign_using_pd_ig core:LinMemInteractionGraphTests:test_linmem_ig core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MirrorSymmetricConformationTests:test_aacomp core:MirrorSymmetricConformationTests:test_aacomp_design_subset core:MirrorSymmetricConformationTests:test_symmetric_conformation core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_dense_npdhb_ig core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_linmem_npdhb_ig core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_standard_npdhb_ig core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_w_bgnode_linmem_npdhb_ig_acc_network core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_w_bgnode_linmem_npdhb_ig_don_network core:NeighborhoodResidueSelectorTests:test_NeighbohoodResidueSelector_fail_no_focus core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_code_level_acces core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_dont_include_focus_close core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_dont_include_focus_far core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_parse_my_tag_selector core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_parse_my_tag_str core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_uninitialized_pose core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_use_last_provided_source_of_focus core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_automatic_symmetry_deduction core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_manual_symmetry_handling core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_automatic_symmetry_deduction core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_manual_symmetry_handling core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_automatic_symmetry_deduction core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_manual_symmetry_handling core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core:PoseTests:test_Pose_mainchain_torsions core:PoseTests:test_Pose_observer core:PoseTests:test_append_pose_by_jump core:PoseTests:test_cutpoint_bond_rotation core:PoseTests:test_serialize_pose core:PoseTests:test_update_cutpoint_virtual_atoms_if_connected core:PoseTests:test_update_cutpoint_virtual_atoms_when_bond_declared core:PoseTests:test_update_cutpoint_virtual_atoms_when_cutpoint_variant_added core:PoseTests:test_update_residue_neighbors core:RDCDataSymmetryTests:test_RDCData_score_calculation_all_media_automatic_symmetry_deduction core:RDCDataSymmetryTests:test_RDCData_score_calculation_all_media_manual_symmetry_handling core:RDCMultiSetSymmetryTests:test_score_calculation_by_nls_automatic_symmetry_deduction core:RDCMultiSetSymmetryTests:test_score_calculation_by_nls_manual_symmetry_handling core:RDCMultiSetSymmetryTests:test_score_calculation_by_svd_automatic_symmetry_deduction core:RDCMultiSetSymmetryTests:test_score_calculation_by_svd_manual_symmetry_handling core:RamaPreProEnergyTests:test_atoms_w_dof_deriv core:RamaPreProEnergyTests:test_rama_cart_deriv_check_partial_flexibility core:RamaPreProEnergyTests:test_rama_deriv_check_full_flexibility core:RamaPreProEnergyTests:test_rama_deriv_check_partial_flexibility core:RamaPreProEnergyTests:test_setup_for_minimizing_with_rama_and_full_bb_flex core:RamaPreProEnergyTests:test_setup_for_minimizing_with_rama_and_partial_bbflex core:RamaPreProEnergyTests:test_symm_rama_cart_deriv_check_partial_flexibility core:ResiduePropertiesTests:test_properties core:ResiduePropertiesTests:test_property_enums core:ResiduePropertiesTests:test_variant_types core:ResidueTypeLinkingConstraintTests:test_constraints core:ResidueTypeLinkingConstraintTests:test_linked_identity_constraints core:ResidueTypeLinkingConstraintTests:test_map_constraints core:ResidueTypeLinkingConstraintTests:test_residue_type_linking_constraints_mod_bonus_map core:ResidueTypeLinkingConstraintTests:test_residue_type_linking_constraints_setters core:ResidueTypeLinkingConstraintTests:test_serialize_ResidueTypeLinkingConstraint core:SapConstraintEnergyTests:test_fast_partial_packing core:SapConstraintEnergyTests:test_helper_lightning core:SapConstraintEnergyTests:test_lightning_packing_partial core:SapConstraintEnergyTests:test_math_mover core:SapConstraintEnergyTests:test_mover core:SapConstraintEnergyTests:test_partial_packing core:SapConstraintEnergyTests:test_selectors core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_chain_similiarity_with_alternative_logic core:SequenceSymmetricAnnealerTests:test_different_accepted_restypes_for_linked_residues core:SequenceSymmetricAnnealerTests:test_fail_in_packing_from_no_common_res_types core:SequenceSymmetricAnnealerTests:test_index_residue_selectors core:SequenceSymmetricAnnealerTests:test_initialise_annealer_from_xml core:SequenceSymmetricAnnealerTests:test_overlapping_index_residue_selectors core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_xml_validation core:SurfaceInteractionGraphTests:test_bg_node_2_resid core:SurfaceInteractionGraphTests:test_blanket_reset_alt_state_counts core:SurfaceInteractionGraphTests:test_commit_substitution core:SurfaceInteractionGraphTests:test_consider_substitution core:SurfaceInteractionGraphTests:test_get_energy_current_state_assignment core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig core:SymmMinimalistInteractionGraphTests:test_symm_minimalist_ig core:SymmetricConformationTests:test_symmetric_conformation core:SymmetricMinimizerTests:test_c2_symm_score core:SymmetricMinimizerTests:test_c3_symm_score core:SymmetricMinimizerTests:test_cs_symm_score core:SymmetricMinimizerTests:test_fibril_symm_score core:SymmetricRotamerTrials:test_symmetric_rotamer_trials core:SymmetricScoreTest:test_SymmetricScoreTest core:Symmetric_Binary_Protein_Silent_File_Tests:test_save_and_restore core:SymmetryUtilTests:test_make_score_function_consistent core:SymmetryUtilTests:test_symmetrize_fold_tree core:TestAsymmetricUnitSelector:test_select_master_subunit_selector core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success devel:FoldabilityFilterTests:test_foldability protocols:AchiralResidueTypeTests:test_import_AIB protocols:AchiralResidueTypeTests:test_mirror_symmetry_AIB protocols:AchiralResidueTypeTests:test_mirror_symmetry_AIB_before_proline protocols:AchiralResidueTypeTests:test_mirror_symmetry_GLY protocols:AchiralResidueTypeTests:test_mirror_symmetry_GLY_before_proline protocols:AchiralResidueTypeTests:test_mirror_symmetry_sarcosine protocols:AchiralResidueTypeTests:test_mirror_symmetry_sarcosine_before_proline protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_AIB protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_AIB_before_proline protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_GLY protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_GLY_before_proline protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_sarcosine protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_sarcosine_before_proline protocols:AchiralResidueTypeTests_betanov15:test_import_AIB protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_AIB protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_AIB_before_proline protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_GLY protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_GLY_before_proline protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_sarcosine protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_sarcosine_before_proline protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_AIB protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_AIB_before_proline protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_GLY protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_GLY_before_proline protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_sarcosine protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_sarcosine_before_proline protocols:AchiralResidueTypeTests_betanov16:test_import_AIB protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_AIB protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_AIB_before_proline protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_GLY protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_GLY_before_proline protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_sarcosine protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_sarcosine_before_proline protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_AIB protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_AIB_before_proline protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_GLY protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_GLY_before_proline protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_sarcosine protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_sarcosine_before_proline protocols:AddHelixSequenceConstraintsMoverTests:test_detect_helices protocols:AddHelixSequenceConstraintsMoverTests:test_limit_ala protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val_by_hydrophobicity protocols:AddHelixSequenceConstraintsMoverTests:test_negative_nterm protocols:AddHelixSequenceConstraintsMoverTests:test_positive_cterm protocols:AntibodyCDRGrafterTests:test_graft_classes protocols:ClaimTests:test_tclaim_constructor_multi_pos protocols:ClaimTests:test_tclaim_constructor_single_pos protocols:ConstraintScoreCutoffFilterTests:test_it_adds_scores protocols:CoupledMovesProtocolTests:test_apply protocols:CoupledMovesProtocolTests:test_bad_init protocols:DdGScan:test_calculate protocols:DdGScan:test_filter_parsing protocols:DdgFilter:test_filter_parsing protocols:DdgFilter:test_use_filter protocols:EnvironmentJump:test_cache_persistence protocols:EnvironmentJump:test_cut_inheritance protocols:EnvironmentJump:test_jump_moves protocols:EnvironmentJump:test_pdb_info_persistence protocols:EnvironmentTorsion:test_dual_environment protocols:EnvironmentTorsion:test_empty_environment protocols:EnvironmentTorsion:test_single_phi_moves protocols:EnvironmentTorsion:test_torsion_can_exclusive_compatibility protocols:EnvironmentTorsion:test_torsion_init protocols:EnvironmentTorsion:test_torsion_must_can_coexist protocols:EnvironmentTorsion:test_torsion_must_exclusive_incompatibility protocols:FoldArchitectMoverTests:test_design protocols:FoldArchitectMoverTests:test_symmetry protocols:FragmentCMTest:test_fragment_insertion protocols:FragmentCMTest:test_xml protocols:GenerateMainchainPotentialTests:test_full_run_ALA protocols:GenerateMainchainPotentialTests:test_full_run_B3N protocols:GenerateMainchainPotentialTests:test_full_run_GLY_asymm protocols:GenerateMainchainPotentialTests:test_full_run_GLY_symm protocols:GenerateMainchainPotentialTests:test_full_run_VAL protocols:GenerateMainchainPotentialTests:test_full_run_VAL_prepro protocols:GenerateMainchainPotentialTests:test_pose_generation protocols:GenerateMainchainPotentialTests:test_pose_generation_prepro protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup protocols:GraftingTest:test_graft_classes protocols:GraftingTest:test_utility_functions protocols:GreedyOptMutationMoverTests:test_GreedyOptMutationMover_ultrasimple protocols:GreenPackerTests:test_GreenPacker_ultrasimple protocols:HBNetMoverTests:test_hbnet_mover_setup protocols:MSDMoverTest:test_correct_constraints protocols:MSDMoverTest:test_keeps_constraints protocols:MSDMoverTest:test_resfile_parsing protocols:MonteCarloTests:test_interface_mc protocols:MonteCarloTests:test_vanilla_mc protocols:MoverJobTests:test_basic_mover_job protocols:MoverJobTests:test_seq_mover_job protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:OptimizeMembranePositionMoverTest:test_default_constructor protocols:OptimizeMembranePositionMoverTest:test_parse_my_tag_input protocols:PackDaemonTest:test_DenseIGRepacker_create_dense_ig protocols:PackDaemonTest:test_DoubleDenseIGRepacker_create_double_dense_ig protocols:PackDaemonTest:test_daemon_set_setup protocols:PackDaemonTest:test_pack_daemon_ctor protocols:PackDaemonTest:test_pack_daemon_repack protocols:PointMutScanDriverTests:test_calculate_neighbor_table protocols:PointMutScanDriverTests:test_fill_mutations_list protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols:PointMutScanDriverTests:test_make_specific_mutant protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols:PoseManipulationTests:test_linear_rigid_body_moves protocols:PoseManipulationTests:test_repack_functions protocols:PoseManipulationTests:test_rotation_rigid_body_moves protocols:ProtectedConf:test_replace_residue protocols:ProteinProteinInterfaceUpweighterTests:test_packing_4SER protocols:PruneBuriedUnsatsOperationTests:test_burial_sanity_check protocols:PruneBuriedUnsatsOperationTests:test_pruning_arg_and_two_ser protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_bb protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_satisfied_bb protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_satisfied_ser protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_ser protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:RNA_DeNovoOptimizerTest:test_sarcin_ricin_loop_buildup protocols:RNA_DeNovoProtocolTest:test_save_times_option protocols:RigidChunkTest:test_apply_to_template protocols:RigidChunkTest:test_chunk protocols:RigidChunkTest:test_two_chunk protocols:RigidChunkTest:test_two_part_chunk protocols:RosettaScriptsParserTests:test_all_attributes_in_xsd_have_descriptions protocols:RosettaScriptsParserTests:test_allowed_multiple_dependencies protocols:RosettaScriptsParserTests:test_multiple_includes protocols:RosettaScriptsParserTests:test_output_scoring protocols:RosettaScriptsParserTests:test_prohibit_circular_dependencies protocols:RosettaScriptsParserTests:test_report_at_end protocols:SimpleThreadingMoverTests:test_basic_class protocols:SymmetricAddMembraneMoverTest:test_appropriate_foldtree protocols:SymmetricAddMembraneMoverTest:test_membrane_jump_tracking protocols:SymmetricAddMembraneMoverTest:test_preserved_symmetry protocols:SymmetricAddMembraneMoverTest:test_symm_add_postconditions protocols:TaskAwareMinMoverTests:test_TaskAwareMinMover protocols:ddG:test_chains_to_move_invert protocols:ddG:test_filter_parsing_dimer protocols:ddG:test_filter_parsing_monomer protocols:ddG:test_use_filter_dimer protocols:ddG:test_use_filter_monomer


branch: benchmark 「№577」
Commited by: Sergey Lyskov
GitHub commit link: 「b4be93e276e4927d」
Difference from previous tested commit:  code diff
Commit date: 2021-06-21 14:31:20

updating keyword argument names

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branch: benchmark 「№576」
Commited by: Sergey Lyskov
GitHub commit link: 「ac6839cb229972b8」
Difference from previous tested commit:  code diff
Commit date: 2021-06-18 18:11:47

updating benchmark scripts

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branch: benchmark 「№575」
Commited by: Vikram K. Mulligan
GitHub commit link: 「18556433cb837296」
Difference from previous tested commit:  code diff
Commit date: 2021-06-10 17:59:37

Merge vmullig/update_tensorflow_version into Sergey's "benchmark" branch. Done with Sergey's permission. Sergey: REVERT THIS MERGE (or rewrite history) if you no longer want this in the "benchmark" branch.

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branch: benchmark 「№574」
Commited by: Sergey Lyskov
GitHub commit link: 「127933e962572cdd」
Difference from previous tested commit:  code diff
Commit date: 2021-06-09 17:14:23

Merge remote-tracking branch 'origin/master' into benchmark

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branch: benchmark 「№573」
Commited by: Sergey Lyskov
GitHub commit link: 「3f50774003429dcd」
Difference from previous tested commit:  code diff
Commit date: 2021-05-10 17:21:35

adding comment and updating tools to master

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branch: benchmark 「№572」
Commited by: Sergey Lyskov
GitHub commit link: 「a983e63937ba1ee4」
Difference from previous tested commit:  code diff
Commit date: 2021-05-07 19:02:17

updating merge-size test to use `--diff` option

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branch: benchmark 「№571」
Commited by: Sergey Lyskov
GitHub commit link: 「392292becbb24e3d」
Difference from previous tested commit:  code diff
Commit date: 2021-05-06 18:55:39

updating merge-size-failure-threshold

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branch: benchmark 「№570」
Commited by: Sergey Lyskov
GitHub commit link: 「fd00adc51bbcd6c9」
Difference from previous tested commit:  code diff
Commit date: 2021-05-06 18:42:02

only setting merge head/base if values were provided

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branch: benchmark 「№569」
Commited by: Sergey Lyskov
GitHub commit link: 「3e05f3c1bfee6d0c」
Difference from previous tested commit:  code diff
Commit date: 2021-05-06 18:23:23

updating `benchmark.py` script, adding support for `--merge-head` and `--merge-base` options

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branch: benchmark 「№568」
Commited by: Sergey Lyskov
GitHub commit link: 「b3dc60dbbde537b4」
Difference from previous tested commit:  code diff
Commit date: 2021-05-06 18:03:49

making size output more readable

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branch: benchmark 「№567」
Commited by: Sergey Lyskov
GitHub commit link: 「1407f6d5d4e2f0ce」
Difference from previous tested commit:  code diff
Commit date: 2021-05-05 19:09:43

renaming to `merge_size`

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