Pushed Revisions

branch: master 「№58804」
Commited by: Vikram K. Mulligan
GitHub commit link: 「ef9dd4d294f43102」
Difference from previous tested commit: code diff
Commit date: 2016-07-19 21:57:59

branch: master 「№58803」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「892dc6f7fb355ad6」「№1472」
Difference from previous tested commit: code diff
Commit date: 2016-07-19 19:44:02

Merge pull request #1472 from RosettaCommons/jadolfbr/jadolfbr/carbohydrates/val_fix Fix simple glycosylation Fix an uninitialized variable in the copy constructor of glycan relax that was causing the simple glycosylation unit test to fail in valgrind. Thanks to @roccomoretti for actually debugging this and finding where the variable was uninitialized in the first place.

branch: master 「№58802」
Commited by: Frank DiMaio
GitHub commit link: 「3dfda3335774295a」「№1473」
Difference from previous tested commit: code diff
Commit date: 2016-07-19 19:19:14

Merge pull request #1473 from RosettaCommons/dimaio/symm_density_fixes Two small fixes for elec_dens_fast with symmetric complexes.

branch: master 「№58801」
Commited by: Hahnbeom Park
GitHub commit link: 「fadb0ac28d8eddd3」「№1470」
Difference from previous tested commit: code diff
Commit date: 2016-07-19 17:03:59

Merge pull request #1470 from RosettaCommons/hahnbeom/fa_intra_elec this is "just adding fa_intra_elec term".

branch: master 「№58800」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「2d1398245393eb68」「№1469」
Difference from previous tested commit: code diff
Commit date: 2016-07-18 22:05:21

branch: master 「№58799」
Commited by: Frank DiMaio
GitHub commit link: 「11809c546db68324」「№1471」
Difference from previous tested commit: code diff
Commit date: 2016-07-18 16:43:49

Merge pull request #1471 from RosettaCommons/dimaio/app_bugfixes Fixing two bugs in hybridize/cartesian_sampler. Thanks @roccomoretti for finding these.

branch: master 「№58798」
Commited by: Rocco Moretti
GitHub commit link: 「109f0a264ed196f7」「№1467」
Difference from previous tested commit: code diff
Commit date: 2016-07-18 11:46:06

Merge pull request #1467 from RosettaCommons/roccomoretti/valgrind_benchmark_fix More integration.py fixes Fix integration.valgrind -- slightly different flags are needed. (--skip-comparison messes it up.) Also, fix the integration test execution time ordering. (The extra directory in the test name messed things up.)

branch: master 「№58797」
Commited by: Tom Linsky
GitHub commit link: 「811632d136667bad」「№1466」
Difference from previous tested commit: code diff
Commit date: 2016-07-17 02:07:20

Merge pull request #1466 from RosettaCommons/tlinsky/constraint_generator_nonglobal Add serialization support to ConstraintsMap

branch: master 「№58796」
Commited by: Rocco Moretti
GitHub commit link: 「ef059b4c5486a977」
Difference from previous tested commit: code diff
Commit date: 2016-07-16 16:13:10

Small change to hts_io integration test. The test doesn't actually produce a screening_features.db3 file, so remove the analysis of that file.

branch: master 「№58795」
Commited by: Rocco Moretti
GitHub commit link: 「ad3252184b328423」「№1454」
Difference from previous tested commit: code diff
Commit date: 2016-07-16 15:01:05

Merge pull request #1454 from RosettaCommons/roccomoretti/alignVectorSets Fixes for numeric:alignVectorSets numeric:alignVectorSets() had some edge conditions (zero vectors, co-linear vectors) which resulted in utility_exits. Add special cases to catch these conditions and do something reasonable instead. Unit tests for alignVectorSets() added. There's some integration test changes observed (KIC_with_fragments, density_denovo), which look to be due to changes in optimizations w/r/t this inlined function. (The changes don't happen locally with a debug build.)

branch: master 「№58794」
Commited by: Rocco Moretti
GitHub commit link: 「ba861e0c30adc65b」「№1465」
Difference from previous tested commit: code diff
Commit date: 2016-07-16 12:45:59

Merge pull request #1465 from RosettaCommons/amelie-stein/ddG_with_ligands On behalf of Amelie, merge in some fixes to the ddg_monomer applicaition to allow it to work with non-amino acid residues.

branch: master 「№58793」
Commited by: Vikram K. Mulligan
GitHub commit link: 「4c3be7cd05e33361」「№1458」
Difference from previous tested commit: code diff
Commit date: 2016-07-14 21:33:24

Merge pull request #1458 from RosettaCommons/vmullig/ncaa_betanov Fix loading of NCAA rotamer libraries when using beta_nov15 The problem turned out to be that beta_nov15 turns on the Shapovalov rotamer libraries, which have a slightly different file format (an extra column in the middle of the file, which is irritating). When an NCAA library is loaded, it is therefore misinterpreted: Rosetta assumes that the extra column is there when it is not. The solution is to count the columns in the first line and to determine whether a file is a Shapovalov-format file or not. Tasks: - Fix the bug. - Merge the latest master into branch. - Fix the fix so that it doesn't break the loading of gzipped rotamer libraries. - Beauty.

branch: master 「№58792」
Commited by: Tom Linsky
GitHub commit link: 「a49b29d96564db59」「№1455」
Difference from previous tested commit: code diff
Commit date: 2016-07-14 18:44:29

Merge pull request #1455 from RosettaCommons/tlinsky/constraint_generator_nonglobal Remove global data from ConstraintsManager

branch: master 「№58791」
Commited by: Tom Linsky
GitHub commit link: 「98ae2632f2725465」「№1459」
Difference from previous tested commit: code diff
Commit date: 2016-07-14 11:32:00

Merge pull request #1459 from RosettaCommons/tlinsky/tlinsky/ss_filter_selector Add residue selector support to SecondaryStructureFilter

branch: master 「№58790」
Commited by: Jeliazko Jeliazkov
GitHub commit link: 「40694948a6960c13」「№1453」
Difference from previous tested commit: code diff
Commit date: 2016-07-13 21:36:31

Merge pull request #1453 from RosettaCommons/lqtza/prepack_centroid_fix Docking Prepack Outputs Full-Atom Poses Only

branch: master 「№58789」
Commited by: Sergey Lyskov
GitHub commit link: 「196fc442ba8b95d8」
Difference from previous tested commit: code diff
Commit date: 2016-07-13 20:51:00

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queued	Queued Test
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comparing	Test results is now comparing with previous results
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