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branch: master 「№59718」
Commited by: Steven Lewis
GitHub commit link: 「16fcd331a1c46ece」
Difference from previous tested commit:  code diff
Commit date: 2017-09-24 21:16:02
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Merge pull request #2560 from RosettaCommons/smlewis/cyrus/XMLs_from_XRW_rosettascriptstestbranch Update rosetta_scripts_scripts submodule with cyrus-sourced XSD XRW scripts. Also update with a bunch of other people's scripts, apparently. I'm tired of the "wait for test server results, oh, someone has changed the base version, you have to test again" dance.

...
Test: mac.clang.integration

Failed sub-tests (click for more details):
swa_rna_erraser


branch: master 「№59717」
Commited by: Sergey Lyskov
GitHub commit link: 「644519856ca23111」
Difference from previous tested commit:  code diff
Commit date: 2017-09-22 21:22:45
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tutorials integration.ubsan integration.valgrind integration performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python35.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug mac.clang.python35.release.PyRosetta4.Debug ubuntu.clang.python35.release.PyRosetta4.Debug ubuntu.clang.python36.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python35.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python35.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release mac.clang.python35.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan unit.ubsan unit.valgrind

Adding mangling of developer email info in git output so it raw email does not appear in test log

...
Test: linux.clang.code_quality.clang_analysis

Failed sub-tests (click for more details):
src/apps/public/darc/DARC.cc src/apps/public/pepspec/pepspec.cc src/apps/public/pepspec/pepspec_anchor_dock.cc src/apps/public/pocket/pocket_suggest_target_residues_by_ddg.cc src/apps/public/weight_optimization/torsional_potential_corrections.cc src/core/conformation/symmetry/SymmetryInfo.cc src/core/io/silent/RNA_SilentStruct.cc src/core/optimization/Minimizer.cc src/core/scoring/constraints/BigBinConstraint.cc src/core/scoring/constraints/ConstraintIO.cc src/core/scoring/methods/GaussianOverlapEnergy.cc src/core/scoring/power_diagram/PowerDiagram.cc src/protocols/antibody/ModelCDRH3.cc src/protocols/cartesian/md.cc src/protocols/comparative_modeling/LoopRelaxMover.cc src/protocols/cryst/refinable_lattice.cc src/protocols/cyclic_peptide/crosslinker/TBMB_Helper.cc src/protocols/cyclic_peptide/crosslinker/TMA_Helper.cc src/protocols/denovo_design/components/SheetDB.cc src/protocols/enzdes/EnzdesFlexBBProtocol.cc src/protocols/enzdes/SecondaryMatchProtocol.cc src/protocols/enzdes/enzdes_util.cc src/protocols/forge/remodel/RemodelAccumulator.cc src/protocols/frag_picker/scores/PhiPsiRmsd.cc src/protocols/frags/TorsionFragment.cc src/protocols/hybridization/FragmentBiasAssigner.cc src/protocols/hybridization/TMalign.cc src/protocols/loop_grower/FragmentExtension.cc src/protocols/loop_grower/LoopGrower.cc src/protocols/loophash/LoopHashLibrary.cc src/protocols/loops/loop_mover/refine/LoopMover_KIC.cc src/protocols/loops/loops_main.cc src/protocols/membrane/OptimizeMembranePositionMover.cc src/protocols/metal_interface/FindClosestAtom.cc src/protocols/moves/MoverStatus.cc src/protocols/mpi_refinement/Clusterer.cc src/protocols/mpi_refinement/MPI_Refinement.cc src/protocols/mpi_refinement/MultiObjective.cc src/protocols/mpi_refinement/util.cc src/protocols/noesy_assign/PeakFileFormat.cc src/protocols/optimize_weights/IterativeOptEDriver.cc src/protocols/pockets/Fingerprint.cc src/protocols/pockets/PocketGrid.cc src/protocols/rna/denovo/fragments/FullAtomRNA_Fragments.cc src/protocols/rna/movers/ErraserMinimizerMover.cc src/protocols/scoring/ImplicitFastClashCheck.cc src/protocols/seeded_abinitio/CoordinateCst.cc src/protocols/sewing/sampling/MonteCarloAssemblyMover.cc src/protocols/simple_filters/ResidueIEFilter.cc src/protocols/simple_filters/SheetFilter.cc src/protocols/simple_moves/AddCavitiesMover.cc src/protocols/simple_moves/TailsScoreMover.cc src/protocols/sparta/Sparta.cc src/protocols/stepwise/legacy/modeler/rna/StepWiseRNA_WorkingParametersSetup.cc src/protocols/stepwise/modeler/util.cc src/protocols/toolbox/DecoySetEvaluation.cc src/protocols/toolbox/task_operations/RestrictNonSurfaceToRepackingOperation.cc src/protocols/topology_broker/CoordConstraintClaimer.cc src/protocols/topology_broker/TopologyBroker.cc src/protocols/viewer/triangleIterator.cc src/utility/libsvm/Svm.cc test/core/conformation/UltraLightResidue.cxxtest.hh
Test: mac.clang.integration

Failed sub-tests (click for more details):
swa_rna_erraser


branch: master 「№59716」
Commited by: Sergey Lyskov
GitHub commit link: 「97d00e0e2acb6df2」
Difference from previous tested commit:  code diff
Commit date: 2017-09-22 20:56:37
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

RosettaAI: Setting pyrosetta_scripts submodule to latest origin/master version.



branch: master 「№59715」
Commited by: Sergey Lyskov
GitHub commit link: 「0d5f0dd292bf75e6」
Difference from previous tested commit:  code diff
Commit date: 2017-09-22 16:55:08
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile release.PyRosetta4.MinSizeRel release.PyRosetta4.Release linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.ubsan

RosettaAI: Setting pyrosetta_scripts submodule to latest origin/master version.

...
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
gen_lig_grids
Test: mac.clang.integration

Failed sub-tests (click for more details):
swa_rna_erraser
Test: linux.gcc.performance

Failed sub-tests (click for more details):
protocols_docking_DockingHighRes


branch: master 「№59714」
Commited by: Sergey Lyskov
GitHub commit link: 「d3ebe63392e6c967」
Difference from previous tested commit:  code diff
Commit date: 2017-09-22 16:31:00
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Merge pull request #2558 from RosettaCommons/benchmark Adding submodule update tests



branch: master 「№59713」
Commited by: Andrew Leaver-Fay
GitHub commit link: 「574c5049374628a1」
Difference from previous tested commit:  code diff
Commit date: 2017-09-22 09:07:25
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Merge pull request #2565 from RosettaCommons/aleaverfay/rs_parser_scripvars_fix parse_rosetta_script application now uses the script_vars option Fixing script-vars issue in parse_rosetta_script and validate_rosetta_script where the RosettaScriptsParser was ignoring the command line options



branch: master 「№59712」
Commited by: Benjamin Basanta
GitHub commit link: 「d6dd2f80ab9a57fe」
Difference from previous tested commit:  code diff
Commit date: 2017-09-21 18:13:29
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.addsan integration.mpi integration.release_debug integration maintenance.documentation performance profile mac.clang.python36.release.PyRosetta4.Debug ubuntu.clang.python27.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Merge pull request #2548 from RosettaCommons/basantab/fix_rotamers_HBNet Fixing bug in HBNet option use_only_input_rot_for_start_res



branch: master 「№59711」
Commited by: Sergey Lyskov
GitHub commit link: 「e8575a8572dd02db」
Difference from previous tested commit:  code diff
Commit date: 2017-09-21 15:15:35
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile release.PyRosetta4.MinSizeRel linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan

Merge pull request #2570 from RosettaCommons/sergey/f Updating 'scripts.pyrosetta' test so it add stdout and stderr into subtest logs.



branch: master 「№59710」
Commited by: Brandon Frenz
GitHub commit link: 「792bc27409046bf9」
Difference from previous tested commit:  code diff
Commit date: 2017-09-21 15:14:32
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Merge pull request #2547 from RosettaCommons/bfrenz/cart_bonded_ring_fix Bfrenz/cart bonded ring fix



branch: master 「№59709」
Commited by: Sharon Guffy
GitHub commit link: 「cfe7327c89784a8c」
Difference from previous tested commit:  code diff
Commit date: 2017-09-20 16:52:47
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration.ubsan integration performance profile linux.clang.python36.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug mac.clang.python35.release.PyRosetta4.Debug ubuntu.clang.python36.release.PyRosetta4.Debug ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel release.PyRosetta4.Release linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Merge pull request #2567 from RosettaCommons/guffysl/lmcs_bugfix Guffysl/lmcs bugfix



branch: master 「№59708」
Commited by: Sergey Lyskov
GitHub commit link: 「239b493e96f8f5e4」
Difference from previous tested commit:  code diff
Commit date: 2017-09-20 16:24:44
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Merge pull request #2561 from RosettaCommons/sergey/f Disabling incremental Binder/LLVM rebuild. Updating pyrosetta_scripts submodule.



branch: master 「№59707」
Commited by: Xingjie Pan
GitHub commit link: 「a19ad2ea80d9e9e4」
Difference from previous tested commit:  code diff
Commit date: 2017-09-19 12:49:00
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tutorials integration performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python35.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug mac.clang.python35.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug ubuntu.clang.python35.release.PyRosetta4.Debug linux.clang.python35.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python35.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release mac.clang.python35.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan unit.ubsan

Merge pull request #2562 from RosettaCommons/xingjiepan/move_SSShapeComplementarityFilter_to_protocols Migrate SSShapeComplementarityFilter from devel to protocols

...
Test: linux.clang.code_quality.clang_analysis

Failed sub-tests (click for more details):
src/apps/public/darc/DARC.cc src/apps/public/pepspec/pepspec.cc src/apps/public/pepspec/pepspec_anchor_dock.cc src/apps/public/pocket/pocket_suggest_target_residues_by_ddg.cc src/apps/public/weight_optimization/torsional_potential_corrections.cc src/core/conformation/symmetry/SymmetryInfo.cc src/core/io/silent/RNA_SilentStruct.cc src/core/optimization/Minimizer.cc src/core/scoring/constraints/BigBinConstraint.cc src/core/scoring/constraints/ConstraintIO.cc src/core/scoring/methods/GaussianOverlapEnergy.cc src/core/scoring/power_diagram/PowerDiagram.cc src/protocols/antibody/ModelCDRH3.cc src/protocols/cartesian/md.cc src/protocols/comparative_modeling/LoopRelaxMover.cc src/protocols/cryst/refinable_lattice.cc src/protocols/cyclic_peptide/crosslinker/TBMB_Helper.cc src/protocols/cyclic_peptide/crosslinker/TMA_Helper.cc src/protocols/denovo_design/components/SheetDB.cc src/protocols/enzdes/EnzdesFlexBBProtocol.cc src/protocols/enzdes/SecondaryMatchProtocol.cc src/protocols/enzdes/enzdes_util.cc src/protocols/forge/remodel/RemodelAccumulator.cc src/protocols/frag_picker/scores/PhiPsiRmsd.cc src/protocols/frags/TorsionFragment.cc src/protocols/hybridization/FragmentBiasAssigner.cc src/protocols/hybridization/TMalign.cc src/protocols/loop_grower/FragmentExtension.cc src/protocols/loop_grower/LoopGrower.cc src/protocols/loophash/LoopHashLibrary.cc src/protocols/loops/loop_mover/refine/LoopMover_KIC.cc src/protocols/loops/loops_main.cc src/protocols/membrane/OptimizeMembranePositionMover.cc src/protocols/metal_interface/FindClosestAtom.cc src/protocols/moves/MoverStatus.cc src/protocols/mpi_refinement/Clusterer.cc src/protocols/mpi_refinement/MPI_Refinement.cc src/protocols/mpi_refinement/MultiObjective.cc src/protocols/mpi_refinement/util.cc src/protocols/noesy_assign/PeakFileFormat.cc src/protocols/optimize_weights/IterativeOptEDriver.cc src/protocols/pockets/Fingerprint.cc src/protocols/pockets/PocketGrid.cc src/protocols/rna/denovo/fragments/FullAtomRNA_Fragments.cc src/protocols/rna/movers/ErraserMinimizerMover.cc src/protocols/scoring/ImplicitFastClashCheck.cc src/protocols/seeded_abinitio/CoordinateCst.cc src/protocols/sewing/sampling/MonteCarloAssemblyMover.cc src/protocols/simple_filters/ResidueIEFilter.cc src/protocols/simple_filters/SheetFilter.cc src/protocols/simple_moves/AddCavitiesMover.cc src/protocols/simple_moves/TailsScoreMover.cc src/protocols/sparta/Sparta.cc src/protocols/stepwise/legacy/modeler/rna/StepWiseRNA_WorkingParametersSetup.cc src/protocols/stepwise/modeler/util.cc src/protocols/toolbox/DecoySetEvaluation.cc src/protocols/toolbox/task_operations/RestrictNonSurfaceToRepackingOperation.cc src/protocols/topology_broker/CoordConstraintClaimer.cc src/protocols/topology_broker/TopologyBroker.cc src/protocols/viewer/triangleIterator.cc src/utility/libsvm/Svm.cc test/core/conformation/UltraLightResidue.cxxtest.hh
Test: mac.clang.integration

Failed sub-tests (click for more details):
cluster_calibur ppi_v3_suiteE swa_rna_erraser
Test: linux.clang.scripts.pyrosetta

Failed sub-tests (click for more details):
Test: mac.clang.scripts.pyrosetta

Failed sub-tests (click for more details):


branch: master 「№59706」
Commited by: Rocco Moretti
GitHub commit link: 「82c1fe4853fb989e」
Difference from previous tested commit:  code diff
Commit date: 2017-09-18 16:54:56
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tutorials integration performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python35.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug ubuntu.clang.python27.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.Release mac.clang.python35.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.ubsan

Merge pull request #2550 from RosettaCommons/roccomoretti/fix_release_unit_tests Fix unit tests in release mode We had some unit tests which were failing when run in release mode. This PR should fix them. This PR also adds a new scons compilation mode, release_symbols, which is release mode with debugging symbols enabled. (This differs from release_debug, which is debug mode with release-mode optimizations turned on. The main difference is whether debug_asserts are active or not.)

...
Test: linux.clang.code_quality.clang_analysis

Failed sub-tests (click for more details):
src/apps/public/darc/DARC.cc src/apps/public/pepspec/pepspec.cc src/apps/public/pepspec/pepspec_anchor_dock.cc src/apps/public/pocket/pocket_suggest_target_residues_by_ddg.cc src/apps/public/weight_optimization/torsional_potential_corrections.cc src/core/conformation/symmetry/SymmetryInfo.cc src/core/io/silent/RNA_SilentStruct.cc src/core/optimization/Minimizer.cc src/core/scoring/constraints/BigBinConstraint.cc src/core/scoring/constraints/ConstraintIO.cc src/core/scoring/methods/GaussianOverlapEnergy.cc src/core/scoring/power_diagram/PowerDiagram.cc src/protocols/antibody/ModelCDRH3.cc src/protocols/cartesian/md.cc src/protocols/comparative_modeling/LoopRelaxMover.cc src/protocols/cryst/refinable_lattice.cc src/protocols/cyclic_peptide/crosslinker/TBMB_Helper.cc src/protocols/cyclic_peptide/crosslinker/TMA_Helper.cc src/protocols/denovo_design/components/SheetDB.cc src/protocols/enzdes/EnzdesFlexBBProtocol.cc src/protocols/enzdes/SecondaryMatchProtocol.cc src/protocols/enzdes/enzdes_util.cc src/protocols/forge/remodel/RemodelAccumulator.cc src/protocols/frag_picker/scores/PhiPsiRmsd.cc src/protocols/frags/TorsionFragment.cc src/protocols/hybridization/FragmentBiasAssigner.cc src/protocols/hybridization/TMalign.cc src/protocols/loop_grower/FragmentExtension.cc src/protocols/loop_grower/LoopGrower.cc src/protocols/loophash/LoopHashLibrary.cc src/protocols/loops/loop_mover/refine/LoopMover_KIC.cc src/protocols/loops/loops_main.cc src/protocols/membrane/OptimizeMembranePositionMover.cc src/protocols/metal_interface/FindClosestAtom.cc src/protocols/moves/MoverStatus.cc src/protocols/mpi_refinement/Clusterer.cc src/protocols/mpi_refinement/MPI_Refinement.cc src/protocols/mpi_refinement/MultiObjective.cc src/protocols/mpi_refinement/util.cc src/protocols/noesy_assign/PeakFileFormat.cc src/protocols/optimize_weights/IterativeOptEDriver.cc src/protocols/pockets/Fingerprint.cc src/protocols/pockets/PocketGrid.cc src/protocols/rna/denovo/fragments/FullAtomRNA_Fragments.cc src/protocols/rna/movers/ErraserMinimizerMover.cc src/protocols/scoring/ImplicitFastClashCheck.cc src/protocols/seeded_abinitio/CoordinateCst.cc src/protocols/sewing/sampling/MonteCarloAssemblyMover.cc src/protocols/simple_filters/ResidueIEFilter.cc src/protocols/simple_filters/SheetFilter.cc src/protocols/simple_moves/AddCavitiesMover.cc src/protocols/simple_moves/TailsScoreMover.cc src/protocols/sparta/Sparta.cc src/protocols/stepwise/legacy/modeler/rna/StepWiseRNA_WorkingParametersSetup.cc src/protocols/stepwise/modeler/util.cc src/protocols/toolbox/DecoySetEvaluation.cc src/protocols/toolbox/task_operations/RestrictNonSurfaceToRepackingOperation.cc src/protocols/topology_broker/CoordConstraintClaimer.cc src/protocols/topology_broker/TopologyBroker.cc src/protocols/viewer/triangleIterator.cc src/utility/libsvm/Svm.cc test/core/conformation/UltraLightResidue.cxxtest.hh
Test: mac.clang.integration

Failed sub-tests (click for more details):
swa_rna_erraser
Test: linux.gcc.profile

Failed sub-tests (click for more details):
AnchoredDesign
Test: linux.clang.scripts.pyrosetta

Failed sub-tests (click for more details):
Test: mac.clang.scripts.pyrosetta

Failed sub-tests (click for more details):


branch: master 「№59705」
Commited by: Andy Watkins
GitHub commit link: 「839226a33c427862」
Difference from previous tested commit:  code diff
Commit date: 2017-09-18 13:39:53
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration.tutorials integration performance profile mac.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan

Merge pull request #2544 from RosettaCommons/everyday847/riboswitches Superimpose alignment error caught while doing riboswitch development



branch: master 「№59704」
Commited by: Vikram K. Mulligan
GitHub commit link: 「46dcc1b1c7a82df5」
Difference from previous tested commit:  code diff
Commit date: 2017-09-16 16:21:44
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification code_quality.clang_analysis serialization integration.addsan integration.mpi integration.release_debug integration.tutorials integration.ubsan integration performance profile mac.clang.python27.release.PyRosetta4.Debug mac.clang.python35.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug ubuntu.clang.python36.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python35.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release mac.clang.python35.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.ubsan unit.valgrind

Merge pull request #2559 from RosettaCommons/vmullig/threadsafe_elec2 Fix a thread safety issue in FA_ElecEnergy method: scratch space was shared between cloned instances The scratch space object was being deep-cloned by the `FA_ElecEnergy::clone()` operation. Now, the operation creates new scratch space. I _think_ this will solve the problem that I'm seeing on Blue Gene by ensuring that the scratch space object is always thread-local. Tasks: - [x] Fix the cloning issue. - [x] Beauty. - [x] Test on Blue Gene/Q. - [x] Check unit tests. - [x] Check integration tests. - [x] Beautify (since master is not beautiful).

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Test: linux.clang.code_quality.clang_analysis

Failed sub-tests (click for more details):
src/apps/public/darc/DARC.cc src/apps/public/pepspec/pepspec.cc src/apps/public/pepspec/pepspec_anchor_dock.cc src/apps/public/pocket/pocket_suggest_target_residues_by_ddg.cc src/apps/public/weight_optimization/torsional_potential_corrections.cc src/core/conformation/symmetry/SymmetryInfo.cc src/core/io/silent/RNA_SilentStruct.cc src/core/optimization/Minimizer.cc src/core/scoring/constraints/BigBinConstraint.cc src/core/scoring/constraints/ConstraintIO.cc src/core/scoring/methods/GaussianOverlapEnergy.cc src/core/scoring/power_diagram/PowerDiagram.cc src/protocols/antibody/ModelCDRH3.cc src/protocols/cartesian/md.cc src/protocols/comparative_modeling/LoopRelaxMover.cc src/protocols/cryst/refinable_lattice.cc src/protocols/cyclic_peptide/crosslinker/TBMB_Helper.cc src/protocols/cyclic_peptide/crosslinker/TMA_Helper.cc src/protocols/denovo_design/components/SheetDB.cc src/protocols/enzdes/EnzdesFlexBBProtocol.cc src/protocols/enzdes/SecondaryMatchProtocol.cc src/protocols/enzdes/enzdes_util.cc src/protocols/forge/remodel/RemodelAccumulator.cc src/protocols/frag_picker/scores/PhiPsiRmsd.cc src/protocols/frags/TorsionFragment.cc src/protocols/hybridization/FragmentBiasAssigner.cc src/protocols/hybridization/TMalign.cc src/protocols/loop_grower/FragmentExtension.cc src/protocols/loop_grower/LoopGrower.cc src/protocols/loophash/LoopHashLibrary.cc src/protocols/loops/loop_mover/refine/LoopMover_KIC.cc src/protocols/loops/loops_main.cc src/protocols/membrane/OptimizeMembranePositionMover.cc src/protocols/metal_interface/FindClosestAtom.cc src/protocols/moves/MoverStatus.cc src/protocols/mpi_refinement/Clusterer.cc src/protocols/mpi_refinement/MPI_Refinement.cc src/protocols/mpi_refinement/MultiObjective.cc src/protocols/mpi_refinement/util.cc src/protocols/noesy_assign/PeakFileFormat.cc src/protocols/optimize_weights/IterativeOptEDriver.cc src/protocols/pockets/Fingerprint.cc src/protocols/pockets/PocketGrid.cc src/protocols/rna/denovo/fragments/FullAtomRNA_Fragments.cc src/protocols/rna/movers/ErraserMinimizerMover.cc src/protocols/scoring/ImplicitFastClashCheck.cc src/protocols/seeded_abinitio/CoordinateCst.cc src/protocols/sewing/sampling/MonteCarloAssemblyMover.cc src/protocols/simple_filters/ResidueIEFilter.cc src/protocols/simple_filters/SheetFilter.cc src/protocols/simple_moves/AddCavitiesMover.cc src/protocols/simple_moves/TailsScoreMover.cc src/protocols/sparta/Sparta.cc src/protocols/stepwise/legacy/modeler/rna/StepWiseRNA_WorkingParametersSetup.cc src/protocols/stepwise/modeler/util.cc src/protocols/toolbox/DecoySetEvaluation.cc src/protocols/toolbox/task_operations/RestrictNonSurfaceToRepackingOperation.cc src/protocols/topology_broker/CoordConstraintClaimer.cc src/protocols/topology_broker/TopologyBroker.cc src/protocols/viewer/triangleIterator.cc src/utility/libsvm/Svm.cc test/core/conformation/UltraLightResidue.cxxtest.hh
Test: ubuntu.gcc.integration.addsan

Failed sub-tests (click for more details):
cleanAlignment cluster_calibur
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
ddG_of_mutation
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
advanced_protein-protein_docking
Test: linux.clang.scripts.pyrosetta

Failed sub-tests (click for more details):
Test: mac.clang.scripts.pyrosetta

Failed sub-tests (click for more details):


branch: master 「№59703」
Commited by: Sergey Lyskov
GitHub commit link: 「4c42bfab1ced584f」
Difference from previous tested commit:  code diff
Commit date: 2017-09-16 05:04:58
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit mac.PyRosetta.unit cppcheck mysql postgres mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta mac.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

RosettaAI: Setting rosetta_scripts_scripts submodule to latest origin/master version.

...
Test: linux.gcc.code_quality.beautification

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
gen_lig_grids
Test: mac.clang.integration

Failed sub-tests (click for more details):
swa_protein_loop_sampler swa_rna_erraser
Test: linux.clang.scripts.pyrosetta

Failed sub-tests (click for more details):
Test: mac.clang.scripts.pyrosetta

Failed sub-tests (click for more details):


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