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branch: master 「№58852」
Commited by: Rocco Moretti
GitHub commit link: 「5d647453b0fdc32d」
Difference from previous tested commit:  code diff
Commit date: 2016-08-16 15:38:25

Update Copyright headers in main. TechTransfer -> CoMotion license@u.washington.edu -> license@uw.edu Other associated normalizations of headers. Merging directly to avoid massive pull request on GitHub.

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branch: master 「№58851」
Commited by: Rebecca Alford
GitHub commit link: 「f7ed5793479fe781」 「№1533」
Difference from previous tested commit:  code diff
Commit date: 2016-08-16 12:38:14

Merge pull request #1533 from RosettaCommons/rfalford12/extend-mpdock-rscript-interface Extend the MPDock parse_my_tag function Add options to MPDock's parse_my_tag to set alternate low & high resolution score functions from the RosettaScripts interface

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branch: master 「№58850」
Commited by: jkleman
GitHub commit link: 「b5021419965d8728」 「№1536」
Difference from previous tested commit:  code diff
Commit date: 2016-08-15 22:45:19

Merge pull request #1536 from RosettaCommons/jkleman/mv_app moving app

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branch: master 「№58849」
Commited by: Hahnbeom Park
GitHub commit link: 「5e139824de605b27」 「№1498」
Difference from previous tested commit:  code diff
Commit date: 2016-08-14 22:37:57

Merge pull request #1498 from RosettaCommons/hahnbeom/cartbonded_and_hxltors Hahnbeom/cartbonded and hxltors

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branch: master 「№58848」
Commited by: Andrea Bazzoli
GitHub commit link: 「121efcf7a34b3b43」 「№1515」
Difference from previous tested commit:  code diff
Commit date: 2016-08-13 15:11:11

Merge pull request #1515 from RosettaCommons/bazzoli/sho-lk-hybrid-for-merge Merge SHO–EEF1 hybrid model

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branch: master 「№58847」
Commited by: Xingjie Pan
GitHub commit link: 「7c1a29c65ff73e90」 「№1531」
Difference from previous tested commit:  code diff
Commit date: 2016-08-13 12:22:40

Merge pull request #1531 from RosettaCommons/xingjiepan/LoopBuilder_bug_fix Fix edges cases for loop modeling

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branch: master 「№58846」
Commited by: Tom Linsky
GitHub commit link: 「55b08e5ba7f6bc68」 「№1500」
Difference from previous tested commit:  code diff
Commit date: 2016-08-12 19:08:01

Merge pull request #1500 from RosettaCommons/tlinsky/ssene_remove_state Remove state information from SetSecStructEnergies mover

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branch: master 「№58845」
Commited by: Tom Linsky
GitHub commit link: 「60e6446da43610b3」 「№1526」
Difference from previous tested commit:  code diff
Commit date: 2016-08-11 19:55:10

Merge pull request #1526 from RosettaCommons/tlinsky/restore_ignore Tlinsky/restore ignore

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branch: master 「№58844」
Commited by: Andrew Watkins
GitHub commit link: 「dc83811516f64ba5」 「№1525」
Difference from previous tested commit:  code diff
Commit date: 2016-08-11 16:13:54

Merge pull request #1525 from RosettaCommons/everyday847/gatekeeper_clarification Clarifying Readme to list the one existing gatekeeper

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branch: master 「№58843」
Commited by: Tom Linsky
GitHub commit link: 「92f5147b9641d715」 「№1520」
Difference from previous tested commit:  code diff
Commit date: 2016-08-11 13:04:45

Merge pull request #1520 from RosettaCommons/tlinsky/delete_region_rechain Add rechain option to DeleteRegionMover

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branch: master 「№58842」
Commited by: Tom Linsky
GitHub commit link: 「605d7aed7e7c9bb6」 「№1518」
Difference from previous tested commit:  code diff
Commit date: 2016-08-10 19:34:57

Merge pull request #1518 from RosettaCommons/tlinsky/constraint_generator_update Updates to DistanceConstraintGenerator and HydrogenBondCstGenerator

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branch: master 「№58841」
Commited by: Tom Linsky
GitHub commit link: 「991e3f9302e90fce」 「№1507」
Difference from previous tested commit:  code diff
Commit date: 2016-08-10 15:55:19

Merge pull request #1507 from RosettaCommons/tlinsky/secondary_structure_filter Fix how secondary structure corrects for strand residues

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branch: master 「№58840」
Commited by: Tom Linsky
GitHub commit link: 「c77ea6d92dd0127d」 「№1519」
Difference from previous tested commit:  code diff
Commit date: 2016-08-10 15:44:49

Merge pull request #1519 from RosettaCommons/tlinsky/fix_bridge_test fix bridge_chains integration test

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branch: master 「№58839」
Commited by: Rhiju Das
GitHub commit link: 「0446c53353fe7b20」 「№1516」
Difference from previous tested commit:  code diff
Commit date: 2016-08-10 02:03:29

Merge pull request #1516 from RosettaCommons/rhiju/fix_syn_anti_south_north Rhiju/fix syn anti south north @fdimaio I used your CircularSplineFunc for this, to set up a dihedral restraint. However, I had to update the function so that when it accepts `x` from a DihedralFunc ,it knows to convert radians to degrees; the flag is 'convert_to_degrees'. I saw in hybridize/HybridizeProtocol that you didn't have the conversions in ... might be worth a quick look.

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branch: master 「№58838」
Commited by: Tom Linsky
GitHub commit link: 「8b9b3123e14f2c1e」 「№1506」
Difference from previous tested commit:  code diff
Commit date: 2016-08-09 22:00:03

Merge pull request #1506 from RosettaCommons/tlinsky/paired_sheet_residue_selector Add residue selector to select residues involved in strand-strand pairings Integration test change expected for code templates due to slightly modified Template files

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branch: master 「№58837」
Commited by: Rhiju Das
GitHub commit link: 「9005cc64587b4189」 「№1513」
Difference from previous tested commit:  code diff
Commit date: 2016-08-09 10:33:18

Merge pull request #1513 from RosettaCommons/rhiju/reconcile_bps_input_pdb_farna Rhiju/reconcile bps input pdb farna + this was needed to model eterna switches in 3D + changed behavior of bps_moves ("base_pair_step moves") to not move residues inherited from input PDBs. Makes SRP modeling cases (e.g. in integration test) worse, but more consistent with other conventions that we've used for, e.g., stepwise.

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