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branch: rosetta:commits 「№20366」
Commited by: Sergey Lyskov
GitHub commit link: 「de11261df8fb2c53」
Difference from previous tested commit: code diff
Commit date: 2024-03-27 21:17:53

update tests to support for compiling PyRosetta with `--torch` and `--tensorflow` flags

Summary

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branch: rosetta:commits 「№20365」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№41」
Merge: 「3e4fc2129」← 「785b988e7」 code diff
Scheduled at: 2024-03-26 14:01:00.545789

Pull Request №41 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: 3e4fc2129edccfa8b8b6e78b27ceb21fe4860b18←785b988e768d02c80e67001db61bc4c18797c5f6 update documentation and remove deprecated scripts ---------------- Merge commit message: update reference Docker files readme

Summary

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branch: rosetta:commits 「№20364」
Commited by: Sergey Lyskov
GitHub Pull Request link: 「№41」
Merge: 「3e4fc2129」← 「f354c5fbb」 code diff
Scheduled at: 2024-03-26 13:46:02.040077

Pull Request №41 RosettaCommons/rosetta/main ← lyskov/rosetta/pyrosetta Merge: 3e4fc2129edccfa8b8b6e78b27ceb21fe4860b18←f354c5fbb3b5d74dc1068e06b1a04a0a7d1a3a6b update documentation and remove deprecated scripts ---------------- Merge commit message: remove deprecated build option and update readme

Rosetta Benchmark 1 month
Tests for this revision was automatically canceled because newer set of tests for pull-request №41 was submitted!

Summary

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branch: rosetta:commits 「№20363」
Commited by: tydingcw
GitHub Pull Request link: 「№24」
Merge: 「717d2e823」← 「b10b7ade3」 code diff
Scheduled at: 2024-03-25 18:02:27.965348

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №24 RosettaCommons/rosetta/main ← tydingcw/rosetta/crosslinkmover_lanthionine Merge: 717d2e8232174371f0c672564f23a097062db88a←b10b7ade3bf6794e15184def6e0f019fb106bc0e Crosslinker Mover lanthionine ---------------- Merge commit message: missed adding this comment

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Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

branch: rosetta:commits 「№20362」
Commited by: tydingcw
GitHub Pull Request link: 「№24」
Merge: 「717d2e823」← 「c0336c54b」 code diff
Scheduled at: 2024-03-25 17:44:33.046827

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №24 RosettaCommons/rosetta/main ← tydingcw/rosetta/crosslinkmover_lanthionine Merge: 717d2e8232174371f0c672564f23a097062db88a←c0336c54ba10de378a0231042c0a9a2f5d21bc75 Crosslinker Mover lanthionine ---------------- Merge commit message: address initial roccomoretti comments

Rosetta Benchmark 2 months
Tests for this revision was automatically canceled because newer set of tests for pull-request №24 was submitted!

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Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

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Test: mac.clang.python38.PyRosetta.unit

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Test: linux.clang.build.debug

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Test: linux.gcc.build.debug

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Test: linux.gcc.cxx11thread.serialization.build.debug

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Test: linux.gcc.mpi.build.debug

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Test: linux.gcc.mpi.serialization.build.debug

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Test: mac.clang.build.debug

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Test: linux.clang.build.ninja_debug

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Test: linux.clang.build.release

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Test: linux.gcc.build.release

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Test: mac.clang.build.release

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Test: linux.gcc.cxx11thread.serialization.code_quality.serialization

Failed sub-tests (click for more details):
core_scoring_constraints_AmbiguousNMRDistanceConstraint.cc

Test: linux.gcc.mpi.serialization.integration.mpi

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Test: linux.clang.integration.release_debug_no_symbols

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Test: linux.clang.tensorflow.integration.tensorflow

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Test: linux.gcc.cxx11thread.integration.thread

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Test: mac.clang.python39.integration

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Test: linux.clang.performance

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Test: linux.clang.profile

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Test: linux.clang.score

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Test: linux.gcc.score

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Test: mac.clang.score

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Test: linux.clang.python39.scripts.pyrosetta

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Test: linux.clang.unit

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Test: linux.gcc.cxx11thread.serialization.unit

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Test: linux.gcc.unit

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Test: mac.clang.unit

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Test: windows.cl.windows.build.debug

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Test: windows.cl.windows.build.release

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branch: rosetta:commits 「№20361」
Commited by: Steffen Möller
GitHub commit link: 「3e4fc2129edccfa8」
Difference from previous tested commit: code diff
Commit date: 2024-03-22 18:08:18

libxml2 build: strcasecmp needs strings.h (#39) The exact error (by clang) was that a missing declaration is no longer supported with the latest C++ standards.

Summary
PyRosetta.notebook 「1」

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Test: gcc-9.gcc.serialization.python37.PyRosetta.notebook

Failed sub-tests (click for more details):
02.02-Working-with-Pose-Residues

branch: rosetta:commits 「№20360」
Commited by: Sergey Lyskov
GitHub commit link: 「dffc8b947ea41f13」
Difference from previous tested commit: code diff
Commit date: 2024-03-21 19:33:31

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

fix PyRosetta license file path (#35)

Summary

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branch: rosetta:commits 「№20359」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№36」
Merge: 「dffc8b947」← 「0592cc4bc」 code diff
Scheduled at: 2024-03-25 12:27:51.567669

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №36 RosettaCommons/rosetta/main ← roccomoretti/rosetta/scons_version_ranges Merge: dffc8b947ea41f1346fb98df62436525a33bcd8e←0592cc4bcfdb6a77cedfcb4015ab9293cffb189e Add ability to specify compiler version ranges in scons settings. ---------------- Merge commit message: More debugging GCC12 on the server.

Summary
gcc-12.gcc.build.release

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Test: gcc-12.gcc.build.release

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branch: rosetta:commits 「№20358」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№36」
Merge: 「dffc8b947」← 「b28a5e3c6」 code diff
Scheduled at: 2024-03-25 12:00:17.852519

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №36 RosettaCommons/rosetta/main ← roccomoretti/rosetta/scons_version_ranges Merge: dffc8b947ea41f1346fb98df62436525a33bcd8e←b28a5e3c6e39f64419ed92c4daf79a1fbcdae6ed Add ability to specify compiler version ranges in scons settings. ---------------- Merge commit message: Tweak to GCC 12 settings.

Summary
gcc-12.gcc.build.release

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Test: gcc-12.gcc.build.release

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branch: rosetta:commits 「№20357」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№36」
Merge: 「dffc8b947」← 「15198becc」 code diff
Scheduled at: 2024-03-25 11:13:26.973142

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №36 RosettaCommons/rosetta/main ← roccomoretti/rosetta/scons_version_ranges Merge: dffc8b947ea41f1346fb98df62436525a33bcd8e←15198beccab0728f1d59f021ea6ac47b513b41dc Add ability to specify compiler version ranges in scons settings. ---------------- Merge commit message: Option not known for GCC 12.0

Summary
gcc-12.gcc.build.release

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Test: gcc-12.gcc.build.release

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branch: rosetta:commits 「№20356」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№40」
Merge: 「3e4fc2129」← 「7b371f3b8」 code diff
Scheduled at: 2024-03-22 15:40:33.534433

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №40 RosettaCommons/rosetta/main ← RosettaCommons/rosetta/roccomoretti-patch-1 Merge: 3e4fc2129edccfa8b8b6e78b27ceb21fe4860b18←7b371f3b8ac5fca06b1dc18d6a9e4a8385c47063 Fix uninitialized variable in InterfaceScoreCalculator ---------------- Merge commit message: Fix uninitialized variable in InterfaceScoreCalculator The native_ensemble_best_ variable was uninitialized, which could potentially cause issues. Make sure we initialize it.

Summary
integration.mpi 「1」

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking

branch: rosetta:commits 「№20355」
Commited by: Steffen Möller
GitHub Pull Request link: 「№38」
Merge: 「dffc8b947」← 「a536b2db9」 code diff
Scheduled at: 2024-03-22 14:12:37.930366

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №38 RosettaCommons/rosetta/main ← smoe/rosetta/Cifparse_build Merge: dffc8b947ea41f1346fb98df62436525a33bcd8e←a536b2db9d3042aac6bdbd62eed6c7a9de95c2aa cifparse: Debian missing unistd include ---------------- Merge commit message: cifparse: Debian missing unistd include

Summary

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branch: rosetta:commits 「№20354」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№36」
Merge: 「dffc8b947」← 「f14fd90b3」 code diff
Scheduled at: 2024-03-22 11:18:45.404257

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №36 RosettaCommons/rosetta/main ← roccomoretti/rosetta/scons_version_ranges Merge: dffc8b947ea41f1346fb98df62436525a33bcd8e←f14fd90b3c9a136f472083d8d97e7b5af0d3b3d4 Add ability to specify compiler version ranges in scons settings. ---------------- Merge commit message: Also include GCC 12 builds for errors.

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Test: gcc-12.gcc.build.debug

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Test: gcc-12.gcc.build.release

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Test: gcc-12.gcc.unit

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branch: rosetta:commits 「№20353」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№36」
Merge: 「dffc8b947」← 「41d14c649」 code diff
Scheduled at: 2024-03-21 19:14:50.146752

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №36 RosettaCommons/rosetta/main ← roccomoretti/rosetta/scons_version_ranges Merge: dffc8b947ea41f1346fb98df62436525a33bcd8e←41d14c6495cb34ac78a7f0d3cec86adbb6f926aa Add ability to specify compiler version ranges in scons settings. ---------------- Merge commit message: Fix comma operator issue.

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Test: gcc-12.gcc.build.release

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Test: linux.clang.bcl.static.build.release

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Test: linux.gcc.bcl.static.build.release

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Test: gcc-11.gcc.unit

Failed sub-tests (click for more details):
protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds

branch: rosetta:commits 「№20352」
Commited by: Rocco Moretti
GitHub Pull Request link: 「№36」
Merge: 「dffc8b947」← 「66f43b899」 code diff
Scheduled at: 2024-03-21 18:46:42.991000

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №36 RosettaCommons/rosetta/main ← roccomoretti/rosetta/scons_version_ranges Merge: dffc8b947ea41f1346fb98df62436525a33bcd8e←66f43b8995e4454bba09e9984ab4804431e48e70 Add ability to specify compiler version ranges in scons settings. ---------------- Merge commit message: Fix typo

Summary
mac.clang.build.debug

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Test: mac.clang.build.debug

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branch: rosetta:commits 「№20351」
Commited by: tydingcw
GitHub Pull Request link: 「№24」
Merge: 「717d2e823」← 「41c5e84b1」 code diff
Scheduled at: 2024-03-19 14:39:00.433497

	linux.clang	linux.gcc	linux.srlz	mac.clang
debug
release
unit

Pull Request №24 RosettaCommons/rosetta/main ← tydingcw/rosetta/crosslinkmover_lanthionine Merge: 717d2e8232174371f0c672564f23a097062db88a←41c5e84b14cfc13ccdb2c08188f4a7a033e4bf2c Crosslinker Mover lanthionine ---------------- Merge commit message: beautify

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
database_md5 replica_docking simple_cycpep_predict_beta_thioether_lariat simple_cycpep_predict_lanthionine simple_cycpep_predict_thioether_lariat

Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
ambiguous_nmr_distance_constraint autoNOE_rosetta crosslinkermover_lanthionine crosslinkermover_methyllanthionine cyclization database_md5 ddG_of_mutation dehydro_aa_patch design_glycans fiber_diffraction_fad fold_and_dock noe_assignment number_of_residuetypes output_schema simple_cycpep_predict_beta_thioether_lariat simple_cycpep_predict_lanthionine simple_cycpep_predict_thioether_cis_sampling simple_cycpep_predict_thioether_lariat small_molecule_lattice_dock

Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5

Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5

Test: mac.clang.python39.integration

Test: linux.clang.profile

Failed sub-tests (click for more details):
build_rotamers

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queued	Queued Test
queued for comparison	Test finished running but not yet compared
running	Test is Running right now
comparing	Test results is now comparing with previous results
finished	Test is finished without errors
failed	Test failed
build Failed	Test could not be run because build failed
script failed	Test results is unknow because test-script failed
canceled	Test was canceled