branch: master 「№58196」
Commited by: Oriel Goldstein
GitHub commit link: 「ac1e7bb408fd067c」
Difference from previous tested commit:  code diff
Commit date: 2015-09-29 13:31:11

hiding source code

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branch: master 「№58195」
Commited by: Oriel Goldstein
GitHub commit link: 「5618f4f7fd7979ca」
Difference from previous tested commit:  code diff
Commit date: 2015-09-29 13:29:03

hiding source code

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branch: master 「№58194」
Commited by: P. Douglas Renfrew
GitHub commit link: 「ac1ba5c978fa275a」 「№833」
Difference from previous tested commit:  code diff
Commit date: 2015-09-29 10:17:38

Merge pull request #833 from RosettaCommons/dougrenfrew/gfp_chromophore_params Adding params for the chromophore in GFP (eg. 4EUL)

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branch: master 「№58193」
Commited by: Tom Linsky
GitHub commit link: 「ed67285c387dd0f3」 「№824」
Difference from previous tested commit:  code diff
Commit date: 2015-09-29 05:50:44

Merge pull request #824 from RosettaCommons/tlinsky/matcher_multiplepose Add option to restore the previous behavior to MatcherMover

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branch: master 「№58192」
Commited by: Vikram K. Mulligan
GitHub commit link: 「f9d95e2ca04fd6a5」 「№838」
Difference from previous tested commit:  code diff
Commit date: 2015-09-28 19:34:24

Merge pull request #838 from RosettaCommons/vmullig/fix_integration_tests Fixing mistake in HbondsToResidueFilter that was causing two integration tests to fail. I was cloning the scorefunction even if the owning pointer were NULL. Fixed now.

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branch: master 「№58191」
Commited by: Andrew Watkins
GitHub commit link: 「3b94d13f5707a1c5」 「№454」
Difference from previous tested commit:  code diff
Commit date: 2015-09-27 19:32:36

Merge pull request #454 from RosettaCommons/smoe/gcc-5_compatibility_PeakFileFormat_arraySize g++-5 found fixed array with variable limit

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branch: master 「№58190」
Commited by: Andrew Watkins
GitHub commit link: 「930861e92d428daf」 「№784」
Difference from previous tested commit:  code diff
Commit date: 2015-09-27 11:18:34

Merge pull request #784 from RosettaCommons/everyday847/analytical_mm_etables Analytical etables for MM LJ potentials

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branch: master 「№58189」
Commited by: havranek
GitHub commit link: 「2cbe95487f058c17」 「№827」
Difference from previous tested commit:  code diff
Commit date: 2015-09-27 10:41:07

Merge pull request #827 from RosettaCommons/havranek/new_multipole_derivs Havranek/new multipole derivs

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branch: master 「№58188」
Commited by: Andrew Watkins
GitHub commit link: 「99dbfb911bc8cc5e」 「№791」
Difference from previous tested commit:  code diff
Commit date: 2015-09-25 20:17:05

Merge pull request #791 from RosettaCommons/everyday847/residue_pair_deriv Integration test changes are only present in circumstances where minimization uses the new method, as might be anticipated. In general, minimization seems more effective, if anything.

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branch: master 「№58187」
Commited by: Sergey Lyskov
GitHub commit link: 「d4db59e2a0a84146」 「№826」
Difference from previous tested commit:  code diff
Commit date: 2015-09-25 13:55:56

Merge pull request #826 from RosettaCommons/PyRosetta Updating PyRosetta dependency calculation algorithm. Adding detection and deletion of stray dir in build directory's.

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branch: master 「№58186」
Commited by: Vikram K. Mulligan
GitHub commit link: 「9184a652bc35c3c1」 「№831」
Difference from previous tested commit:  code diff
Commit date: 2015-09-25 06:42:27

Merge pull request #831 from RosettaCommons/revert-830-revert-829-vmullig/clang_fix_master Re-merge "Fix library levels and Mac clang builds" Reverts RosettaCommons/main#830

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branch: master 「№58185」
Commited by: Vikram K. Mulligan
GitHub commit link: 「ecf9ce868e516c82」 「№830」
Difference from previous tested commit:  code diff
Commit date: 2015-09-25 06:25:14

Merge pull request #830 from RosettaCommons/revert-829-vmullig/clang_fix_master Revert "Fix library levels and Mac clang builds" Reverts RosettaCommons/main#829 Blargh -- I was too quick on the merge.

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branch: master 「№58184」
Commited by: Vikram K. Mulligan
GitHub commit link: 「21af408d3374a577」 「№829」
Difference from previous tested commit:  code diff
Commit date: 2015-09-25 06:18:01

Merge pull request #829 from RosettaCommons/vmullig/clang_fix_master Fix library levels and Mac clang builds @davidekim: Please use the test server next time. Your merge messed up the library dependencies. Restoring by moving cyclize_peptide() and fixH() functions from protocols/forge/methods/util.cc to protocols/relax/util.cc. In the process, I'm rewriting fixH() to use the proper functions in core for rebuilding polymer bond-dependent atoms (rather than manually placing the atom named "H" at a hardcoded position).

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branch: master 「№58183」
Commited by: Andrew Watkins
GitHub commit link: 「684269596b1a8814」 「№808」
Difference from previous tested commit:  code diff
Commit date: 2015-09-25 01:31:40

Merge pull request #808 from RosettaCommons/everyday847/more_ring_work Pack with ring conformers

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branch: master 「№58182」
Commited by: davidekim
GitHub commit link: 「fd66021f71d2e80c」 「№828」
Difference from previous tested commit:  code diff
Commit date: 2015-09-24 15:43:57

Merge pull request #828 from RosettaCommons/davidekim/gaurav_cyclic_peptide_stuff Adding in Gaurav's cyclic peptide code for ab initio.

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branch: master 「№58181」
Commited by: davidekim
GitHub commit link: 「8070d21e80be50ae」
Difference from previous tested commit:  code diff
Commit date: 2015-09-24 13:28:50

Added a torsions only vall for the older vall 2001 version.

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