Pushed Revisions

branch: master 「№59028」
Commited by: Vikram K. Mulligan
GitHub commit link: 「de5f5645e7092a5d」「№1732」
Difference from previous tested commit: code diff
Commit date: 2016-10-20 02:47:33

Merge pull request #1732 from RosettaCommons/vmullig/vmullig/support_nmethyl_3 Incremental merge #2 of N-methyl support This one fixes a number of bugs and adds support for randomly drawing mainchain torsions biased by the probability distribution from a custom RamaPrePro map.

branch: master 「№59027」
Commited by: Labonte
GitHub commit link: 「0c3dc27b1bc25aeb」「№1735」
Difference from previous tested commit: code diff
Commit date: 2016-10-19 22:04:04

Merge pull request #1735 from RosettaCommons/JWLabonte/PyRosetta PyRosetta: Restoring pose_from_pdb() Its absence is wrecking a whole bunch of user's scripts and it is what is published in the Workshops. We can't just go changing the names of functions in PyRosetta so rapidly, so I am restoring the wrapper I added in version 3 that was commented out in version 4.

branch: master 「№59026」
Commited by: Vikram K. Mulligan
GitHub commit link: 「960d3f38963bdf5b」「№1729」
Difference from previous tested commit: code diff
Commit date: 2016-10-19 03:12:34

Merge pull request #1729 from RosettaCommons/hssnzdh2/cycpep_changes Enabling the use of some ncAAs in simple_cycpep_prediction. This pull request is making small changes (literally adding 4 lines) to simple_cycpep_prediction app and genkic_perturber to use canonical aa rama tables for ncAAs for which a backbone_aa is specified in the params file. This will allow us to forward fold our designed peptides with some common ncAAs. Done: - add the option to SimpleCycpepPredictionApplication - add the option to GeneralizedKICPerturber - set for testing @gbhardwaj @vmullig

branch: master 「№59025」
Commited by: Rhiju Das
GitHub commit link: 「bbcf1cd8480eed63」「№1724」
Difference from previous tested commit: code diff
Commit date: 2016-10-18 21:56:41

Merge pull request #1724 from RosettaCommons/rhiju/rb_recces Rigid-body RECCES for K_d estimation all tests change a little bit due to residue_types increasing; i have carefully looked at other changes, and they are in the tests that routinely change a tiny bit due to floating point instabilities.

branch: master 「№59024」
Commited by: Rocco Moretti
GitHub commit link: 「fd6de9a856a21163」「№1731」
Difference from previous tested commit: code diff
Commit date: 2016-10-18 16:44:08

Merge pull request #1731 from RosettaCommons/roccomoretti/sanitizer_unicode_issue Fix sanitizer unicode issue Change the benchmark tests to be more robust to Unicode values in the various output files.

branch: master 「№59023」
Commited by: Rhiju Das
GitHub commit link: 「790b5a8c10f84d0c」
Difference from previous tested commit: code diff
Commit date: 2016-10-18 11:29:12

branch: master 「№59022」
Commited by: Rocco Moretti
GitHub commit link: 「02872e3d9a0c9482」「№1727」
Difference from previous tested commit: code diff
Commit date: 2016-10-18 10:43:08

Merge pull request #1727 from RosettaCommons/roccomoretti/score_XML_error_handling Add error checking for scale_sc_dens_byres setting in RosettaScripts. Catch user input errors and try to give better diagnostic messages.

branch: master 「№59021」
Commited by: Vikram K. Mulligan
GitHub commit link: 「d060d1da573ae319」「№1728」
Difference from previous tested commit: code diff
Commit date: 2016-10-18 07:34:21

Merge pull request #1728 from RosettaCommons/vmullig/copy_rotamer Add a mover for copying a rotamer from one position to another. This adds a mover that copies the rotamer from one position in a pose to another. It matches the residuetype and the side-chain torsions. @kweigithub Tasks: - Create mover using template scripts. - Register it. - Write parse_my_tag(). - Write apply(). - Unit test. - Integration test. - Documentation. - Beauty. For a future pull request: - Option to copy all side-chain DoFs.

branch: master 「№59020」
Commited by: Vikram K. Mulligan
GitHub commit link: 「db8ea46e5945f6ac」「№1725」
Difference from previous tested commit: code diff
Commit date: 2016-10-18 02:20:12

Merge pull request #1725 from RosettaCommons/vmullig/solve_asymmetry Fix asymmetry issues with simple_cycpep_predict Custom flat Ramachandran maps used for sampling are not symmetric. Fixing this. Tasks: - Add pilot app for symmetrizing a Ramachandran map. - Update symmetric flat maps in database. - Test on Jojo with large-scale sampling. (Confirmed! This fixes the asymmetry problem.) - Beauty.

branch: master 「№59019」
Commited by: Brandon Frenz
GitHub commit link: 「9a13725b606cbe2e」「№1713」
Difference from previous tested commit: code diff
Commit date: 2016-10-17 13:41:35

Merge pull request #1713 from RosettaCommons/revert-1712-vmullig/revert_cart_breakages Revert "Reverting pull request 1699 due to breakages of simple_cycpep_predict tests." All issues have been fixed, merging the features back in.

branch: master 「№59018」
Commited by: Xingjie Pan
GitHub commit link: 「5d318346de8d269d」
Difference from previous tested commit: code diff
Commit date: 2016-10-17 00:59:49

branch: master 「№59017」
Commited by: Xingjie Pan
GitHub commit link: 「ee9fe0742863c216」「№1723」
Difference from previous tested commit: code diff
Commit date: 2016-10-16 19:21:59

Merge pull request #1723 from RosettaCommons/xingjiepan/fix_LoopModeler_bugs Xingjiepan/fix loop modeler problems

branch: master 「№59016」
Commited by: Labonte
GitHub commit link: 「4237fba19107da20」
Difference from previous tested commit: code diff
Commit date: 2016-10-14 13:32:31

branch: master 「№59015」
Commited by: Vikram K. Mulligan
GitHub commit link: 「e8c94d50f4461855」「№1722」
Difference from previous tested commit: code diff
Commit date: 2016-10-13 21:23:23

Merge pull request #1722 from RosettaCommons/vmullig/cycpep_analysis Adding a pilot app to do some simple analysis on the bin distribution from peptide backbone enumeration. No integration test changes expected.

branch: master 「№59014」
Commited by: Rocco Moretti
GitHub commit link: 「d6fa73d986502917」「№1721」
Difference from previous tested commit: code diff
Commit date: 2016-10-13 21:05:52

Merge pull request #1721 from RosettaCommons/roccomoretti/using_mac_fix Fix header_using_check integration test grep on Mac apparently formats its output slightly differently than grep on Linux, resulting in issues with the way I set up the header_using_check integration test.

branch: master 「№59013」
Commited by: Daniel Farrell
GitHub commit link: 「87ac61c2ce7da19e」「№1714」
Difference from previous tested commit: code diff
Commit date: 2016-10-13 12:55:26

Merge pull request #1714 from RosettaCommons/danpf/lapl_master Danpf/lapl master

Legend:

queued	Queued Test
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