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branch: master 「№61784」
Commited by: Ryan Feehan
GitHub commit link: 「4339c87dfe6fdaf2」 「№4970」
Difference from previous tested commit:  code diff
Commit date: 2021-10-19 18:33:10
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug linux.clang.python38.release.PyRosetta4.Debug linux.clang.python39.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug mac.clang.python38.release.PyRosetta4.Debug mac.clang.python39.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python39.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python38.release.PyRosetta4.MinSizeRel mac.clang.python39.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel ubuntu.clang.python39.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release linux.clang.python38.release.PyRosetta4.Release linux.clang.python39.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python37.release.PyRosetta4.Release mac.clang.python38.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release ubuntu.clang.python38.release.PyRosetta4.Release ubuntu.clang.python39.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.glycan_dock.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan unit.valgrind gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #4970 from RosettaCommons/RFeehan-KU/EZpotential R feehan ku/e zpotential

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
database_md5
Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5
Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: mac.clang.python27.release.PyRosetta4.Debug

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Test: mac.clang.python36.release.PyRosetta4.Debug

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Test: mac.clang.python37.release.PyRosetta4.Debug

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Test: mac.clang.python38.release.PyRosetta4.Debug

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Test: mac.clang.python39.release.PyRosetta4.Debug

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Test: mac.clang.python27.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python36.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python37.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python38.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python39.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python27.release.PyRosetta4.Release

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Test: mac.clang.python36.release.PyRosetta4.Release

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Test: mac.clang.python37.release.PyRosetta4.Release

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Test: mac.clang.python38.release.PyRosetta4.Release

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Test: mac.clang.python39.release.PyRosetta4.Release

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Test: linux.clang.score

Failed sub-tests (click for more details):
mpAsymEZ_scorefxn
Test: linux.gcc.score

Failed sub-tests (click for more details):
mpAsymEZ_scorefxn
Test: mac.clang.score

Failed sub-tests (click for more details):
mpAsymEZ_scorefxn


branch: master 「№61783」
Commited by: Vikram K. Mulligan
GitHub commit link: 「cc95ad86b050b32f」 「№5660」
Difference from previous tested commit:  code diff
Commit date: 2021-10-19 17:27:44
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile mac.clang.python37.release.PyRosetta4.Release mac.clang.python38.release.PyRosetta4.Release release.source scientific.abinitio_RosettaNMR_pcs scientific.docking_ensemble.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5660 from RosettaCommons/vmullig/citation_info_for_approx_buried_unsat_penalty Updating citation for approximate buried unsatisfied penalty to list Coventry and Baker PlosCompBio 2021. (Small update to the citation database.)

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
database_md5
Test: linux.clang.tensorflow.integration.tensorflow

Failed sub-tests (click for more details):
database_md5
Test: linux.gcc.cxx11thread.integration.thread

Failed sub-tests (click for more details):
database_md5
Test: mac.clang.python37.release.PyRosetta4.Release

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Test: mac.clang.python38.release.PyRosetta4.Release

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Test: linux.clang.scientific.abinitio_RosettaNMR_pcs

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Test: linux.clang.scientific.docking_ensemble.debug

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branch: master 「№61782」
Commited by: Vikram K. Mulligan
GitHub commit link: 「c73a1f2453fe2108」 「№5657」
Difference from previous tested commit:  code diff
Commit date: 2021-10-18 10:52:31
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug linux.clang.python38.release.PyRosetta4.Debug linux.clang.python39.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug mac.clang.python38.release.PyRosetta4.Debug mac.clang.python39.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python39.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python38.release.PyRosetta4.MinSizeRel mac.clang.python39.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel ubuntu.clang.python39.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release linux.clang.python38.release.PyRosetta4.Release linux.clang.python39.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python37.release.PyRosetta4.Release mac.clang.python38.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release ubuntu.clang.python38.release.PyRosetta4.Release ubuntu.clang.python39.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50 scientific.sb_talaris13_fast_design scientific.simple_cycpep_predict.debug scientific.simple_cycpep_predict linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5657 from RosettaCommons/vmullig/another_minor_clang_tidy_fix Remove redundant "virtual" keywords from function prototypes already marked as "override". This is another stylistic thing flagged by clang-tidy.

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Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: mac.clang.python27.release.PyRosetta4.Debug

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Test: mac.clang.python36.release.PyRosetta4.Debug

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Test: mac.clang.python37.release.PyRosetta4.Debug

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Test: mac.clang.python38.release.PyRosetta4.Debug

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Test: mac.clang.python39.release.PyRosetta4.Debug

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Test: mac.clang.python27.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python36.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python37.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python38.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python39.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python27.release.PyRosetta4.Release

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Test: mac.clang.python36.release.PyRosetta4.Release

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Test: mac.clang.python37.release.PyRosetta4.Release

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Test: mac.clang.python38.release.PyRosetta4.Release

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Test: mac.clang.python39.release.PyRosetta4.Release

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50.debug

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.simple_cycpep_predict.debug

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.simple_cycpep_predict

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branch: master 「№61781」
Commited by: Vikram K. Mulligan
GitHub commit link: 「08c2a4a33b197b40」 「№5656」
Difference from previous tested commit:  code diff
Commit date: 2021-10-16 03:32:48
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug linux.clang.python38.release.PyRosetta4.Debug linux.clang.python39.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug mac.clang.python38.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python39.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python38.release.PyRosetta4.MinSizeRel mac.clang.python39.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel ubuntu.clang.python39.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release linux.clang.python38.release.PyRosetta4.Release linux.clang.python39.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release ubuntu.clang.python38.release.PyRosetta4.Release ubuntu.clang.python39.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.FlexPepDock.debug scientific.FlexPepDock scientific.RosettaCM.debug scientific.RosettaCM scientific.abinitio_RosettaNMR_rdc scientific.ddg_ala_scan.debug scientific.ddg_ala_scan scientific.design_fast scientific.docking.debug scientific.docking scientific.glycan_structure_prediction.debug scientific.ligand_docking.debug scientific.loop_modeling_ccd_12res.debug scientific.loop_modeling_kic_12res scientific.loop_modeling_kic_fragments_12res scientific.loop_modeling_ngk_12res scientific.make_fragments.debug scientific.mhc_epitope_energy.debug scientific.mhc_epitope_energy scientific.mp_domain_assembly.debug scientific.mp_domain_assembly scientific.mp_f19_ddG_of_mutation.debug scientific.mp_f19_ddG_of_mutation scientific.mp_f19_decoy_discrimination scientific.mp_f19_sequence_recovery scientific.mp_lipid_acc scientific.mp_symdock.debug scientific.mp_symdock scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50 scientific.simple_cycpep_predict.debug scientific.simple_cycpep_predict linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan unit.valgrind gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5656 from RosettaCommons/vmullig/suppress_thread_index_in_tracers_if_single_threaded Suppress output of thread index in tracer lines if the RosettaThreadManager has been instructed to launch only one thread. Requested by @ajasja.

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Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: mac.clang.python36.release.PyRosetta4.Debug

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Test: mac.clang.python37.release.PyRosetta4.Debug

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Test: mac.clang.python38.release.PyRosetta4.Debug

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Test: mac.clang.python36.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python38.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python39.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python36.release.PyRosetta4.Release

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Test: mac.clang.python39.release.PyRosetta4.Release

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50.debug

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.peptide_pnear_vs_ic50

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.simple_cycpep_predict.debug

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.simple_cycpep_predict

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branch: master 「№61780」
Commited by: Vikram K. Mulligan
GitHub commit link: 「c4c403ce61df8000」 「№5620」
Difference from previous tested commit:  code diff
Commit date: 2021-10-16 03:30:39
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50 scientific.simple_cycpep_predict.debug scientific.simple_cycpep_predict linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5620 from RosettaCommons/vmullig/pdb_names_in_cluster_output Ensure that the energy_based_clustering app writes out the filenames or other descriptors of poses that it clusters.

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branch: master 「№61779」
Commited by: Vikram K. Mulligan
GitHub commit link: 「a7a9ea3649cd4fdb」 「№5654」
Difference from previous tested commit:  code diff
Commit date: 2021-10-16 03:28:45
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source scientific.abinitio_RosettaNMR_pcs scientific.docking_ensemble.debug scientific.protein_data_bank_diagnostic.full linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5654 from RosettaCommons/vmullig/minor_clang_tidy_fix Minor fix to something that I introduced that clang tidy doesn't like. Clang tidy complains about using string::compare() instead of string::operator==. Fixing.

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Test: linux.clang.scientific.abinitio_RosettaNMR_pcs

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Test: linux.clang.scientific.docking_ensemble.debug

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Test: linux.clang.scientific.protein_data_bank_diagnostic.full

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branch: master 「№61778」
Commited by: Brian Weitzner
GitHub commit link: 「1ed90fd878d4775c」 「№5633」
Difference from previous tested commit:  code diff
Commit date: 2021-10-15 19:38:43
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source scientific.antibody_h3_modeling scientific.antibody_snugdock.debug scientific.cofactor_binding_sites.debug scientific.cofactor_binding_sites scientific.design_fast.debug scientific.ligand_scoring_ranking.debug scientific.ligand_scoring_ranking scientific.loop_modeling_ccd_12res scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_ngk_12res.debug scientific.mp_f19_sequence_recovery.debug scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50 scientific.relax_cartesian scientific.relax_fast_5iter scientific.simple_cycpep_predict.debug scientific.simple_cycpep_predict linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5633 from RosettaCommons/tjbrunette/loop_closure_python_fix Tjbrunette/loop closure python fix

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branch: master 「№61777」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「e4cd8a9ee45f3eb9」 「№5226」
Difference from previous tested commit:  code diff
Commit date: 2021-10-15 13:16:37
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.PyRosetta4.Release release.source scientific.abinitio_RosettaNMR_pcs scientific.docking_ensemble.debug scientific.enzyme_design scientific.mp_dock.debug scientific.mp_dock scientific.mp_f19_decoy_discrimination.debug scientific.mp_lipid_acc.debug scientific.mp_relax.debug scientific.relax_cartesian.debug scientific.relax_fast.debug scientific.relax_fast_5iter.debug scientific.rna_denovo_favorites.debug scientific.sewing.debug scientific.stepwise_rna_favorites.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5226 from RosettaCommons/jadolfbr/fix_total_energy_metric Fix bug in TotalEnergyMetric that was missing non-pairwise-decomposable terms

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Test: mac.clang.python37.release.PyRosetta4.Release

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Test: linux.clang.scientific.abinitio_RosettaNMR_pcs

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Test: linux.clang.scientific.docking_ensemble.debug

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branch: master 「№61776」
Commited by: Benjamin P. Brown
GitHub commit link: 「36da336f7720aa14」 「№5641」
Difference from previous tested commit:  code diff
Commit date: 2021-10-14 09:23:25
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug mac.clang.python38.release.PyRosetta4.Debug mac.clang.python39.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python38.release.PyRosetta4.MinSizeRel mac.clang.python39.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release mac.clang.python38.release.PyRosetta4.Release ubuntu.clang.python39.release.PyRosetta4.Release release.source scientific.abinitio_RosettaNMR_pcs.debug scientific.abinitio_RosettaNMR_pcs scientific.abinitio_RosettaNMR_rdc.debug scientific.antibody_h3_modeling.debug scientific.antibody_snugdock scientific.docking_ensemble.debug scientific.docking_ensemble scientific.enzyme_design.debug scientific.fragments_picking.debug scientific.fragments_picking scientific.glycan_dock.debug scientific.glycan_dock scientific.glycan_structure_prediction scientific.ligand_docking scientific.loop_modeling_kic_12res.debug scientific.mp_f19_tilt_angle.debug scientific.mp_f19_tilt_angle scientific.mp_relax scientific.relax_fast scientific.rna_denovo_favorites scientific.sewing scientific.stepwise_rna_favorites linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5641 from RosettaCommons/brownbp1/bcl_submodule_updates_10-2021 Brownbp1/bcl submodule updates 10 2021

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Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: mac.clang.python36.release.PyRosetta4.Debug

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Test: mac.clang.python37.release.PyRosetta4.Debug

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Test: mac.clang.python38.release.PyRosetta4.Debug

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Test: mac.clang.python39.release.PyRosetta4.Debug

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Test: mac.clang.python27.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python36.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python37.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python38.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python39.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python38.release.PyRosetta4.Release

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Test: linux.clang.scientific.abinitio_RosettaNMR_pcs

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Test: linux.clang.scientific.docking_ensemble.debug

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branch: master 「№61775」
Commited by: Vikram K. Mulligan
GitHub commit link: 「e92e2cd4c557ac1e」 「№5572」
Difference from previous tested commit:  code diff
Commit date: 2021-10-12 18:12:31
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug linux.clang.python38.release.PyRosetta4.Debug linux.clang.python39.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python39.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel ubuntu.clang.python39.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release linux.clang.python38.release.PyRosetta4.Release linux.clang.python39.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python37.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release ubuntu.clang.python38.release.PyRosetta4.Release ubuntu.clang.python39.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.abinitio_RosettaNMR_pcs scientific.docking_ensemble.debug scientific.protein_data_bank_diagnostic.full scientific.sb_talaris13_loop_modeling_ngk_12res scientific.sb_talaris14_loop_modeling_ccd_12res scientific.sb_talaris14_loop_modeling_kic_12res scientific.sb_talaris14_loop_modeling_kic_fragments_12res scientific.sb_talaris14_loop_modeling_ngk_12res linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan unit.valgrind gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5572 from RosettaCommons/vmullig/simple_threading_mover_changes Add better support for noncanonicals to the SimpleThreadingMover This PR: - [x] Switches the SimpleThreadingMover to use the MutateResidue mover rather than the packer (allowing more diverse mutations to be introduced). - [x] Adds support for sequences provided as oneletter codes, three letter codes, base names, full names, _etc._ - [x] Adds a series of unit tests for using the SimpleThreadingMover to thread sequences that include non-canonical amino acids, provided as oneletter codes, threeletter codes, base names, or full names. - [x] Updates the SeqeunceMetric to use enum classes for its modes rather than ordinary enums. - [x] Restore support for indicating a space (no mutation) with a dash. - [x] Confirm that `GraftSwitchMoverTests:test_graft_switch_mover_setup`, which was flagging this, now passes. - [x] Updates documentation for SimpleThreadingMover.

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Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: mac.clang.python27.release.PyRosetta4.Debug

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Test: mac.clang.python27.release.PyRosetta4.Release

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Test: mac.clang.python36.release.PyRosetta4.Release

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Test: mac.clang.python37.release.PyRosetta4.Release

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Test: mac.clang.python39.release.PyRosetta4.Release

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Test: linux.clang.scientific.protein_data_bank_diagnostic.full

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branch: master 「№61774」
Commited by: Kevin Drew
GitHub commit link: 「75dff3c3db832c9d」 「№5635」
Difference from previous tested commit:  code diff
Commit date: 2021-10-09 10:09:40
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug linux.clang.python38.release.PyRosetta4.Debug linux.clang.python39.release.PyRosetta4.Debug mac.clang.python39.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python39.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel ubuntu.clang.python39.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release linux.clang.python38.release.PyRosetta4.Release linux.clang.python39.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python37.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release ubuntu.clang.python38.release.PyRosetta4.Release ubuntu.clang.python39.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.antibody_grafting.debug scientific.antibody_grafting scientific.make_fragments scientific.sb_score12_loop_modeling_ngk_12res scientific.sb_talaris13_loop_modeling_ccd_12res scientific.sb_talaris13_loop_modeling_kic_12res scientific.sb_talaris13_loop_modeling_kic_fragments_12res linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5635 from RosettaCommons/cmaes_minimizer Fixing Cmaes minimizer integration test, adding lambda option

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
cmaes_minimizer
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
cmaes_minimizer
Test: mac.clang.python39.release.PyRosetta4.Debug

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Test: mac.clang.python27.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python37.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python36.release.PyRosetta4.Release

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Test: mac.clang.python37.release.PyRosetta4.Release

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Test: mac.clang.python39.release.PyRosetta4.Release

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Test: linux.clang.scientific.sb_score12_loop_modeling_ngk_12res

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branch: master 「№61773」
Commited by: Benjamin P. Brown
GitHub commit link: 「aa61990e5bcbbd38」 「№5352」
Difference from previous tested commit:  code diff
Commit date: 2021-10-07 11:06:27
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile mac.clang.python27.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug mac.clang.python38.release.PyRosetta4.Debug mac.clang.python39.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python38.release.PyRosetta4.MinSizeRel mac.clang.python39.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python37.release.PyRosetta4.Release mac.clang.python38.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release release.source scientific.protein_data_bank_diagnostic.full linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5352 from RosettaCommons/bcl_integration_submodule Bcl integration submodule

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
cmaes_minimizer
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
cmaes_minimizer
Test: mac.clang.python27.release.PyRosetta4.Debug

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Test: mac.clang.python36.release.PyRosetta4.Debug

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Test: mac.clang.python37.release.PyRosetta4.Debug

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Test: mac.clang.python38.release.PyRosetta4.Debug

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Test: mac.clang.python39.release.PyRosetta4.Debug

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Test: mac.clang.python27.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python36.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python37.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python38.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python39.release.PyRosetta4.MinSizeRel

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Test: mac.clang.python27.release.PyRosetta4.Release

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Test: mac.clang.python36.release.PyRosetta4.Release

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Test: mac.clang.python37.release.PyRosetta4.Release

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Test: mac.clang.python38.release.PyRosetta4.Release

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Test: mac.clang.python39.release.PyRosetta4.Release

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Test: linux.clang.scientific.protein_data_bank_diagnostic.full

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branch: master 「№61772」
Commited by: Sergey Lyskov
GitHub commit link: 「72c958a4a4897959」
Difference from previous tested commit:  code diff
Commit date: 2021-10-05 13:21:56
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.ubsan integration maintenance.documentation performance profile mac.clang.python27.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug mac.clang.python38.release.PyRosetta4.Debug mac.clang.python39.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python39.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python38.release.PyRosetta4.MinSizeRel mac.clang.python39.release.PyRosetta4.MinSizeRel ubuntu.clang.python39.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python37.release.PyRosetta4.Release mac.clang.python38.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release release.source scientific.protein_data_bank_diagnostic.full scientific.sb_ligand_docking scientific.sb_score12_loop_modeling_kic_fragments_12res linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

dummy commit to trigger test run

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
cmaes_minimizer
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
cmaes_minimizer
Test: linux.clang.scientific.protein_data_bank_diagnostic.full

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branch: master 「№61771」
Commited by: Sergey Lyskov
GitHub commit link: 「a54471452374b434」 「№5628」
Difference from previous tested commit:  code diff
Commit date: 2021-10-04 10:47:13
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.PyRosetta4.Debug release.PyRosetta4.MinSizeRel release.PyRosetta4.Release release.source scientific.protein_data_bank_diagnostic.cif scientific.protein_data_bank_diagnostic.full linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5628 from RosettaCommons/ssm_update_9-30-21 minor tweaks to ROSIE stabilize-pm script

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
cmaes_minimizer
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
cmaes_minimizer
Test: linux.clang.scientific.protein_data_bank_diagnostic.cif

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Test: linux.clang.scientific.protein_data_bank_diagnostic.full

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branch: master 「№61770」
Commited by: Kevin Drew
GitHub commit link: 「261911398f29bcf7」 「№5618」
Difference from previous tested commit:  code diff
Commit date: 2021-10-04 00:01:00
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug mac.clang.python38.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python38.release.PyRosetta4.MinSizeRel mac.clang.python39.release.PyRosetta4.MinSizeRel release.PyRosetta4.Release release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5618 from RosettaCommons/cmaes_minimizer Adding "blackbox" covariance matrix adaptation evolution strategy (Cmaes) minimizer.

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
cmaes_minimizer
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
cmaes_minimizer


branch: master 「№61769」
Commited by: Jared Adolf-Bryfogle
GitHub commit link: 「9fee91b614eb9e2d」 「№5626」
Difference from previous tested commit:  code diff
Commit date: 2021-10-01 18:51:35
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile mac.clang.python36.release.PyRosetta4.Release mac.clang.python39.release.PyRosetta4.Release release.source scientific.sb_score12_docking linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5626 from RosettaCommons/jadolfbr/public_apps Make rosetta_scripts_jd3 public. Documentation: https://new.rosettacommons.org/docs/latest/RosettaScripts-JD3

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Test: linux.clang.scientific.sb_score12_docking

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