Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/prefix/nobu-5/linux/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 ./scons.py bin mode=release_debug cxx=gcc extras=mpi,serialization -j64
Running: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/nobu-5/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug --compiler=gcc --extras=mpi,serialization --timeout=3600 -j64 --skip-comparison --suffix mpi --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/mpiserialization.linuxgccrelease_debug"
Running integration script...
Command line: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/nobu-5/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug --compiler=gcc --extras=mpi,serialization --timeout=3600 -j64 --skip-comparison --suffix mpi --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/mpiserialization.linuxgccrelease_debug"
Using Rosetta source dir at: /home/benchmark/rosetta/source
Using Rosetta database dir at:/home/benchmark/rosetta/database
Current Versions Tested:
MAIN: 80a92ffab8ebd1f800e6aa202b1560366aeb6a34
TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85
DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92
Python: `/home/benchmark/prefix/nobu-5/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/python`
Outdir: new
Running Test revold
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/revold/command.mpi.sh
Running Test replica_docking
ulimit -t 7200 && bash /home/benchmark/rosetta/tests/integration/new/replica_docking/command.mpi.sh
Running Test mpi_simple_cycpep_predict_computing_pnear_to_all
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict_computing_pnear_to_all/command.mpi.sh
Running Test recon_design_mpi
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recon_design_mpi/command.mpi.sh
Running Test mpi_simple_cycpep_predict_4level
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict_4level/command.mpi.sh
Running Test mpi_simple_cycpep_predict
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict/command.mpi.sh
Running Test features_pdb_mpi
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_pdb_mpi/command.mpi.sh
Running Test database_md5
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_md5/command.mpi.sh
Running Test helical_bundle_predict_psipred_with_helix_globals
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.mpi.sh
Running Test helical_bundle_predict_psipred
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.mpi.sh
Running Test helical_bundle_predict
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict/command.mpi.sh
Running Test helical_bundle_predict_skipping_residues
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.mpi.sh
Running Test helical_bundle_predict_sequence
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.mpi.sh
Running Test simple_cycpep_predict_bondangle_bondlength
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.mpi.sh
Running Test simple_cycpep_predict_terminal_disulfide_tails_2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.mpi.sh
Running Test simple_cycpep_predict_beta_thioether_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.mpi.sh
Running Test threefold_symm_peptide_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefold_symm_peptide_design/command.mpi.sh
Running Test simple_cycpep_predict_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_design/command.mpi.sh
Running Test simple_cycpep_predict_thioether_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.mpi.sh
Running Test backbonegridsampler_nstruct_mode
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.mpi.sh
Running Test simple_cycpep_predict_sidechain_isopeptide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.mpi.sh
Running Test simple_cycpep_predict_terminal_disulfide_tails
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.mpi.sh
Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.mpi.sh
Running Test simple_cycpep_predict_nterm_isopeptide_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.mpi.sh
Running Test simple_cycpep_predict_sidechain_isopeptide_reverse
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.mpi.sh
Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.mpi.sh
Running Test simple_cycpep_predict_cterm_isopeptide_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.mpi.sh
Running Test simple_cycpep_predict_terminal_disulfide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.mpi.sh
Running Test simple_cycpep_predict_lanthionine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.mpi.sh
--------------------------------------------------------------------------
[[29016,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2692001] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2692001] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
dumping features_IntegrationTest.db3_1 ...
dumping features_IntegrationTest.db3_2 ...
merging dumps ...
off
exclusive
analyzing database ...
Finished simple_cycpep_predict_lanthionine in 43 seconds [~ 807 test (100.0%) started, 0 in queue, 28 running]
Finished features_pdb_mpi in 43 seconds [~ 807 test (100.0%) started, 0 in queue, 27 running]
--------------------------------------------------------------------------
[[29024,1],1]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691993] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691993] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_nterm_isopeptide_lariat in 45 seconds [~ 807 test (100.0%) started, 0 in queue, 26 running]
--------------------------------------------------------------------------
[[29043,1],1]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691978] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691978] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_sidechain_isopeptide in 47 seconds [~ 807 test (100.0%) started, 0 in queue, 25 running]
--------------------------------------------------------------------------
[[29028,1],2]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691997] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691997] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_cterm_isopeptide_lariat in 48 seconds [~ 807 test (100.0%) started, 0 in queue, 24 running]
Finished backbonegridsampler_nstruct_mode in 50 seconds [~ 807 test (100.0%) started, 0 in queue, 23 running]
--------------------------------------------------------------------------
[[29017,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2692000] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2692000] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 50 seconds [~ 807 test (100.0%) started, 0 in queue, 22 running]
--------------------------------------------------------------------------
[[29039,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691990] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691990] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 51 seconds [~ 807 test (100.0%) started, 0 in queue, 21 running]
--------------------------------------------------------------------------
[[29029,1],2]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691996] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691996] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 54 seconds [~ 807 test (100.0%) started, 0 in queue, 20 running]
Finished mpi_simple_cycpep_predict in 57 seconds [~ 807 test (100.0%) started, 0 in queue, 19 running]
--------------------------------------------------------------------------
[[29019,1],2]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2692002] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2692002] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_terminal_disulfide in 61 seconds [~ 807 test (100.0%) started, 0 in queue, 18 running]
Finished mpi_simple_cycpep_predict_4level in 67 seconds [~ 807 test (100.0%) started, 0 in queue, 17 running]
Finished recon_design_mpi in 68 seconds [~ 807 test (100.0%) started, 0 in queue, 16 running]
--------------------------------------------------------------------------
[[29040,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691977] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691977] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_thioether_lariat in 68 seconds [~ 807 test (100.0%) started, 0 in queue, 15 running]
--------------------------------------------------------------------------
[[29037,1],2]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691988] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691988] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_terminal_disulfide_tails in 69 seconds [~ 807 test (100.0%) started, 0 in queue, 14 running]
Finished threefold_symm_peptide_design in 73 seconds [~ 807 test (100.0%) started, 0 in queue, 13 running]
Finished mpi_simple_cycpep_predict_computing_pnear_to_all in 84 seconds [~ 807 test (100.0%) started, 0 in queue, 12 running]
--------------------------------------------------------------------------
[[29060,1],2]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691965] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691965] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_beta_thioether_lariat in 93 seconds [~ 807 test (100.0%) started, 0 in queue, 11 running]
--------------------------------------------------------------------------
[[29064,1],1]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691953] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691953] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 97 seconds [~ 807 test (100.0%) started, 0 in queue, 10 running]
Finished database_md5 in 108 seconds [~ 807 test (100.0%) started, 0 in queue, 9 running]
--------------------------------------------------------------------------
[[29076,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691949] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691949] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_bondangle_bondlength in 113 seconds [~ 807 test (100.0%) started, 0 in queue, 8 running]
--------------------------------------------------------------------------
[[29062,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
[nobu-5:2691967] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691967] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished simple_cycpep_predict_design in 134 seconds [~ 807 test (100.0%) started, 0 in queue, 7 running]
--------------------------------------------------------------------------
[[29072,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
[nobu-5:2691945] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691945] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished helical_bundle_predict_sequence in 248 seconds [~ 807 test (100.0%) started, 0 in queue, 6 running]
--------------------------------------------------------------------------
[[29080,1],1]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
[nobu-5:2691937] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691937] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished helical_bundle_predict in 251 seconds [~ 807 test (100.0%) started, 0 in queue, 5 running]
--------------------------------------------------------------------------
[[29084,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
[nobu-5:2691941] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691941] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished helical_bundle_predict_skipping_residues in 254 seconds [~ 807 test (100.0%) started, 0 in queue, 4 running]
--------------------------------------------------------------------------
[[29092,1],3]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
[nobu-5:2691933] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691933] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished helical_bundle_predict_psipred in 299 seconds [~ 807 test (100.0%) started, 0 in queue, 3 running]
--------------------------------------------------------------------------
[[29088,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: nobu-5
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
[nobu-5:2691929] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics
[nobu-5:2691929] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Finished helical_bundle_predict_psipred_with_helix_globals in 334 seconds [~ 807 test (100.0%) started, 0 in queue, 2 running]
Finished revold in 556 seconds [~ 807 test (100.0%) started, 0 in queue, 1 running]
*** Test replica_docking exceeded the timeout=7200.0 and will be killed! [2025-05-30 20:31:22.216491]
Finished replica_docking in 7200 seconds [~ 807 test (100.0%) started, 0 in queue, 0 running]
Skipping comparison/analysis phase because command line option "--skip-comparison" was specified...
Missing new/runtimes.yaml
──────────────── 'hojo-2' comparing commits:20772 linux.gcc.mpi.serialization.integration.mpi test_id=860987 vs. main:62162 previous_test_id=860608 ────────────────
{
"compared_with_test": {
"full_name": "linux.gcc.mpi.serialization.integration.mpi",
"name": "integration.mpi",
"platform": {
"compiler": "gcc",
"extras": [
"mpi",
"serialization"
],
"os": "linux"
},
"platform_as_string": "linux.gcc.mpi.serialization",
"revision": {
"branch": "main",
"revision_id": 62162
},
"state": "failed",
"test_id": 860608
},
"summary": {
"failed": 7,
"failed_tests": [
"mpi_simple_cycpep_predict",
"mpi_simple_cycpep_predict_4level",
"recon_design_mpi",
"threefold_symm_peptide_design",
"replica_docking",
"backbonegridsampler_nstruct_mode",
"mpi_simple_cycpep_predict_computing_pnear_to_all"
],
"total": 29
},
"tests": {
"backbonegridsampler_nstruct_mode": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62162/backbonegridsampler_nstruct_mode/log and /home/benchmark/working_dir/commits:20772/backbonegridsampler_nstruct_mode/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62162/backbonegridsampler_nstruct_mode/log /home/benchmark/working_dir/commits:20772/backbonegridsampler_nstruct_mode/log\r\n0a1,12\r\n> --------------------------------------------------------------------------\r\n> [[29051,1],0]: A high-performance Open MPI point-to-point messaging module\r\n> was unable to find any relevant network interfaces:\r\n> \r\n> Module: OpenFabrics (openib)\r\n> Host: nobu-5\r\n> \r\n> Another transport will be used instead, although this may result in\r\n> lower performance.\r\n> --------------------------------------------------------------------------\r\n> [nobu-5:2691970] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics\r\n> [nobu-5:2691970] Set MCA parameter \"orte_base_help_aggregate\" to 0 to see all help / error messages\r\n",
"state": "failed"
},
"database_md5": {
"log": "",
"state": "passed"
},
"features_pdb_mpi": {
"log": "",
"state": "passed"
},
"helical_bundle_predict": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred_with_helix_globals": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_sequence": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_skipping_residues": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62162/mpi_simple_cycpep_predict/log and /home/benchmark/working_dir/commits:20772/mpi_simple_cycpep_predict/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62162/mpi_simple_cycpep_predict/log /home/benchmark/working_dir/commits:20772/mpi_simple_cycpep_predict/log\r\n0a1,12\r\n> --------------------------------------------------------------------------\r\n> [[29105,1],2]: A high-performance Open MPI point-to-point messaging module\r\n> was unable to find any relevant network interfaces:\r\n> \r\n> Module: OpenFabrics (openib)\r\n> Host: nobu-5\r\n> \r\n> Another transport will be used instead, although this may result in\r\n> lower performance.\r\n> --------------------------------------------------------------------------\r\n> [nobu-5:2691912] 2 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics\r\n> [nobu-5:2691912] Set MCA parameter \"orte_base_help_aggregate\" to 0 to see all help / error messages\r\n",
"state": "failed"
},
"mpi_simple_cycpep_predict_4level": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62162/mpi_simple_cycpep_predict_4level/log and /home/benchmark/working_dir/commits:20772/mpi_simple_cycpep_predict_4level/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62162/mpi_simple_cycpep_predict_4level/log /home/benchmark/working_dir/commits:20772/mpi_simple_cycpep_predict_4level/log\r\n0a1,12\r\n> --------------------------------------------------------------------------\r\n> [[29114,1],2]: A high-performance Open MPI point-to-point messaging module\r\n> was unable to find any relevant network interfaces:\r\n> \r\n> Module: OpenFabrics (openib)\r\n> Host: nobu-5\r\n> \r\n> Another transport will be used instead, although this may result in\r\n> lower performance.\r\n> --------------------------------------------------------------------------\r\n> [nobu-5:2691907] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics\r\n> [nobu-5:2691907] Set MCA parameter \"orte_base_help_aggregate\" to 0 to see all help / error messages\r\n",
"state": "failed"
},
"mpi_simple_cycpep_predict_computing_pnear_to_all": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62162/mpi_simple_cycpep_predict_computing_pnear_to_all/log and /home/benchmark/working_dir/commits:20772/mpi_simple_cycpep_predict_computing_pnear_to_all/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62162/mpi_simple_cycpep_predict_computing_pnear_to_all/log /home/benchmark/working_dir/commits:20772/mpi_simple_cycpep_predict_computing_pnear_to_all/log\r\n0a1,12\r\n> --------------------------------------------------------------------------\r\n> [[29124,1],0]: A high-performance Open MPI point-to-point messaging module\r\n> was unable to find any relevant network interfaces:\r\n> \r\n> Module: OpenFabrics (openib)\r\n> Host: nobu-5\r\n> \r\n> Another transport will be used instead, although this may result in\r\n> lower performance.\r\n> --------------------------------------------------------------------------\r\n> [nobu-5:2691901] 2 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics\r\n> [nobu-5:2691901] Set MCA parameter \"orte_base_help_aggregate\" to 0 to see all help / error messages\r\n",
"state": "failed"
},
"recon_design_mpi": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62162/recon_design_mpi/log_main and /home/benchmark/working_dir/commits:20772/recon_design_mpi/log_main differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62162/recon_design_mpi/log_main /home/benchmark/working_dir/commits:20772/recon_design_mpi/log_main\r\n0a1,10\r\n> --------------------------------------------------------------------------\r\n> [[29126,1],1]: A high-performance Open MPI point-to-point messaging module\r\n> was unable to find any relevant network interfaces:\r\n> \r\n> Module: OpenFabrics (openib)\r\n> Host: nobu-5\r\n> \r\n> Another transport will be used instead, although this may result in\r\n> lower performance.\r\n> --------------------------------------------------------------------------\r\n6a17,18\r\n> [nobu-5:2691903] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics\r\n> [nobu-5:2691903] Set MCA parameter \"orte_base_help_aggregate\" to 0 to see all help / error messages\r\n",
"state": "failed"
},
"replica_docking": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62162/replica_docking/log and /home/benchmark/working_dir/commits:20772/replica_docking/log differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/logs/log_0 and /home/benchmark/working_dir/commits:20772/replica_docking/logs/log_0 differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/logs/log_1 and /home/benchmark/working_dir/commits:20772/replica_docking/logs/log_1 differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/logs/log_2 and /home/benchmark/working_dir/commits:20772/replica_docking/logs/log_2 differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/logs/log_3 and /home/benchmark/working_dir/commits:20772/replica_docking/logs/log_3 differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/output/decoys.out and /home/benchmark/working_dir/commits:20772/replica_docking/output/decoys.out differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/output/decoys_P_0001_traj.out and /home/benchmark/working_dir/commits:20772/replica_docking/output/decoys_P_0001_traj.out differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/output/decoys_P_0002_traj.out.oversized and /home/benchmark/working_dir/commits:20772/replica_docking/output/decoys_P_0002_traj.out.oversized differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/output/scores.fsc and /home/benchmark/working_dir/commits:20772/replica_docking/output/scores.fsc differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/tempering.stats and /home/benchmark/working_dir/commits:20772/replica_docking/tempering.stats differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/.test_got_timeout_kill.log and /home/benchmark/working_dir/commits:20772/replica_docking/.test_got_timeout_kill.log differ\r\nFiles /home/benchmark/working_dir/main:62162/replica_docking/trial.stats and /home/benchmark/working_dir/commits:20772/replica_docking/trial.stats differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62162/replica_docking/log /home/benchmark/working_dir/commits:20772/replica_docking/log\r\n0a1,10\r\n> --------------------------------------------------------------------------\r\n> [[29128,1],1]: A high-performance Open MPI point-to-point messaging module\r\n> was unable to find any relevant network interfaces:\r\n> \r\n> Module: OpenFabrics (openib)\r\n> Host: nobu-5\r\n> \r\n> Another transport will be used instead, although this may result in\r\n> lower performance.\r\n> --------------------------------------------------------------------------\r\n12a23,24\r\n> [nobu-5:2691889] 5 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics\r\n> [nobu-5:2691889] Set MCA parameter \"orte_base_help_aggregate\" to 0 to see all help / error messages\r\n14c26\r\n...truncated...\n< protocols.moves.TrialCounter: (2) br_CA_CA_22 trials= 2201; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_25 trials= 2271; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_28 trials= 2206; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_31 trials= 2139; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_34 trials= 2165; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.canonical_sampling.SilentTrajectoryRecorder: (2) 49500 E=-1.03e+03 temp_level=1 temperature=1\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> protocols.moves.TrialCounter: (2) RigidBodyPerturb trials= 24729; accepts= 0.1659; energy_drop/trial= -0.00083\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_04 trials= 2347; accepts= 0.3451; energy_drop/trial= -0.00960\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_07 trials= 2412; accepts= 0.3010; energy_drop/trial= -0.09342\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_10 trials= 2329; accepts= 0.3040; energy_drop/trial= 0.00422\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_13 trials= 2401; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_16 trials= 2184; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_19 trials= 2258; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_22 trials= 2305; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_25 trials= 2175; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_28 trials= 2118; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_31 trials= 2123; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.moves.TrialCounter: (2) br_CA_CA_34 trials= 2120; accepts= 1.0000; energy_drop/trial= 0.00000\r\n> protocols.canonical_sampling.SilentTrajectoryRecorder: (2) 49500 E=-1.04e+03 temp_level=1 temperature=1\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22643c22638\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22650c22645\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22657c22652\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22664c22659\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22671c22666\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22678c22673\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22685c22680\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22692c22687\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22699c22694\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22706c22701\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22713c22708\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22720c22715\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22727c22722\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22734c22729\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22741c22736\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22748c22743\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22755c22750\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22762c22757\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22769c22764\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22776c22771\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22783c22778\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22790c22785\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22797c22792\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22804c22799\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians)\r\n---\r\n> core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.16723 (in Radians)\r\n22811,22824c22806,22819\r\n< protocols.moves.TrialCounter: (2) RigidBodyPerturb trials= 25111; accepts= 0.0354; energy_drop/trial= -0.00001\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_04 trials= 2365; accepts= 0.3548; energy_drop/trial= -0.00835\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_07 trials= 2325; accepts= 0.3045; energy_drop/trial= -0.05815\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_10 trials= 2343; accepts= 0.3282; energy_drop/trial= -0.03750\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_13 trials= 2312; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_16 trials= 2217; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCount\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n",
"state": "script failed"
},
"revold": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_beta_thioether_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_bondangle_bondlength": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_design": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_lanthionine": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide_reverse": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails_2": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_thioether_lariat": {
"log": "",
"state": "passed"
},
"threefold_symm_peptide_design": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62162/threefold_symm_peptide_design/log and /home/benchmark/working_dir/commits:20772/threefold_symm_peptide_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62162/threefold_symm_peptide_design/log /home/benchmark/working_dir/commits:20772/threefold_symm_peptide_design/log\r\n0a1,12\r\n> --------------------------------------------------------------------------\r\n> [[29063,1],1]: A high-performance Open MPI point-to-point messaging module\r\n> was unable to find any relevant network interfaces:\r\n> \r\n> Module: OpenFabrics (openib)\r\n> Host: nobu-5\r\n> \r\n> Another transport will be used instead, although this may result in\r\n> lower performance.\r\n> --------------------------------------------------------------------------\r\n> [nobu-5:2691966] 3 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics\r\n> [nobu-5:2691966] Set MCA parameter \"orte_base_help_aggregate\" to 0 to see all help / error messages\r\n",
"state": "failed"
}
}
}