Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/prefix/hojo-2/linux/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 ./scons.py bin mode=release_debug cxx=gcc extras=mpi,serialization -j24
Running: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/hojo-2/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug --compiler=gcc --extras=mpi,serialization --timeout=3600 -j24 --skip-comparison --suffix mpi --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/mpiserialization.linuxgccrelease_debug"
Running integration script...
Command line: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/hojo-2/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug --compiler=gcc --extras=mpi,serialization --timeout=3600 -j24 --skip-comparison --suffix mpi --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/mpiserialization.linuxgccrelease_debug"
Using Rosetta source dir at: /home/benchmark/rosetta/source
Using Rosetta database dir at:/home/benchmark/rosetta/database
Current Versions Tested:
MAIN: c222ef9507e93f14065548d72615b7b66d479d1f
TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85
DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92
Python: `/home/benchmark/prefix/hojo-2/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/python`
Outdir: new
Running Test revold
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/revold/command.mpi.sh
Running Test replica_docking
ulimit -t 7200 && bash /home/benchmark/rosetta/tests/integration/new/replica_docking/command.mpi.sh
Running Test mpi_simple_cycpep_predict_computing_pnear_to_all
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict_computing_pnear_to_all/command.mpi.sh
Running Test recon_design_mpi
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recon_design_mpi/command.mpi.sh
Running Test mpi_simple_cycpep_predict_4level
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict_4level/command.mpi.sh
Running Test mpi_simple_cycpep_predict
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict/command.mpi.sh
Running Test features_pdb_mpi
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_pdb_mpi/command.mpi.sh
Running Test database_md5
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_md5/command.mpi.sh
Running Test helical_bundle_predict_psipred
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.mpi.sh
Running Test helical_bundle_predict_psipred_with_helix_globals
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.mpi.sh
Running Test helical_bundle_predict
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict/command.mpi.sh
Running Test helical_bundle_predict_skipping_residues
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.mpi.sh
Running Test helical_bundle_predict_sequence
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.mpi.sh
Running Test simple_cycpep_predict_bondangle_bondlength
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.mpi.sh
Running Test simple_cycpep_predict_terminal_disulfide_tails_2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.mpi.sh
Running Test simple_cycpep_predict_beta_thioether_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.mpi.sh
Running Test threefold_symm_peptide_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefold_symm_peptide_design/command.mpi.sh
Running Test simple_cycpep_predict_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_design/command.mpi.sh
Running Test backbonegridsampler_nstruct_mode
Running Test simple_cycpep_predict_thioether_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.mpi.sh
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.mpi.sh
Running Test simple_cycpep_predict_sidechain_isopeptide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.mpi.sh
Running Test simple_cycpep_predict_terminal_disulfide_tails
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.mpi.sh
Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.mpi.sh
Running Test simple_cycpep_predict_nterm_isopeptide_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.mpi.sh
Finished simple_cycpep_predict_terminal_disulfide_tails in 336 seconds [~ 801 test (99.5031055900621%) started, 4 in queue, 24 running]
Running Test simple_cycpep_predict_sidechain_isopeptide_reverse
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.mpi.sh
Finished simple_cycpep_predict_sidechain_isopeptide in 753 seconds [~ 802 test (99.62732919254658%) started, 3 in queue, 24 running]
Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.mpi.sh
Finished database_md5 in 832 seconds [~ 803 test (99.75155279503106%) started, 2 in queue, 24 running]
Running Test simple_cycpep_predict_cterm_isopeptide_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.mpi.sh
Finished backbonegridsampler_nstruct_mode in 844 seconds [~ 804 test (99.87577639751552%) started, 1 in queue, 24 running]
Running Test simple_cycpep_predict_terminal_disulfide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.mpi.sh
Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 849 seconds [~ 805 test (100.0%) started, 0 in queue, 24 running]
Running Test simple_cycpep_predict_lanthionine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.mpi.sh
dumping features_IntegrationTest.db3_1 ...
dumping features_IntegrationTest.db3_2 ...
merging dumps ...
off
exclusive
analyzing database ...
Finished features_pdb_mpi in 864 seconds [~ 805 test (100.0%) started, 0 in queue, 23 running]
Finished simple_cycpep_predict_nterm_isopeptide_lariat in 870 seconds [~ 805 test (100.0%) started, 0 in queue, 22 running]
Finished mpi_simple_cycpep_predict_4level in 887 seconds [~ 805 test (100.0%) started, 0 in queue, 21 running]
Finished simple_cycpep_predict_thioether_lariat in 888 seconds [~ 805 test (100.0%) started, 0 in queue, 20 running]
Finished recon_design_mpi in 895 seconds [~ 805 test (100.0%) started, 0 in queue, 19 running]
Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 176 seconds [~ 805 test (100.0%) started, 0 in queue, 18 running]
Finished mpi_simple_cycpep_predict in 933 seconds [~ 805 test (100.0%) started, 0 in queue, 17 running]
Finished simple_cycpep_predict_lanthionine in 131 seconds [~ 805 test (100.0%) started, 0 in queue, 16 running]
Finished threefold_symm_peptide_design in 986 seconds [~ 805 test (100.0%) started, 0 in queue, 15 running]
Finished simple_cycpep_predict_cterm_isopeptide_lariat in 154 seconds [~ 805 test (100.0%) started, 0 in queue, 14 running]
Finished simple_cycpep_predict_beta_thioether_lariat in 1037 seconds [~ 805 test (100.0%) started, 0 in queue, 13 running]
Finished simple_cycpep_predict_terminal_disulfide in 214 seconds [~ 805 test (100.0%) started, 0 in queue, 12 running]
Finished mpi_simple_cycpep_predict_computing_pnear_to_all in 1070 seconds [~ 805 test (100.0%) started, 0 in queue, 11 running]
Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 734 seconds [~ 805 test (100.0%) started, 0 in queue, 10 running]
Finished simple_cycpep_predict_bondangle_bondlength in 1114 seconds [~ 805 test (100.0%) started, 0 in queue, 9 running]
Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 1197 seconds [~ 805 test (100.0%) started, 0 in queue, 8 running]
Finished simple_cycpep_predict_design in 1215 seconds [~ 805 test (100.0%) started, 0 in queue, 7 running]
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
Finished helical_bundle_predict_skipping_residues in 1487 seconds [~ 805 test (100.0%) started, 0 in queue, 6 running]
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
Finished helical_bundle_predict in 1530 seconds [~ 805 test (100.0%) started, 0 in queue, 5 running]
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
Finished helical_bundle_predict_sequence in 1530 seconds [~ 805 test (100.0%) started, 0 in queue, 4 running]
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
Finished helical_bundle_predict_psipred in 1725 seconds [~ 805 test (100.0%) started, 0 in queue, 3 running]
******** (C) Copyright Rosetta Commons Member Institutions. ***************
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
******** (C) Copyright Rosetta Commons Member Institutions. ***************
* Use of Rosetta for commercial purposes may require purchase of a license. *
******** See LICENSE.md or email license@uw.edu for more details. **********
Finished helical_bundle_predict_psipred_with_helix_globals in 1732 seconds [~ 805 test (100.0%) started, 0 in queue, 2 running]
Finished revold in 1957 seconds [~ 805 test (100.0%) started, 0 in queue, 1 running]
*** Test replica_docking exceeded the timeout=7200.0 and will be killed! [2025-05-09 19:54:18.873814]
Finished replica_docking in 7200 seconds [~ 805 test (100.0%) started, 0 in queue, 0 running]
Skipping comparison/analysis phase because command line option "--skip-comparison" was specified...
Missing new/runtimes.yaml
──────────────── 'hojo-2' comparing commits:20747 linux.gcc.mpi.serialization.integration.mpi test_id=858962 vs. main:62158 previous_test_id=858056 ────────────────
{
"compared_with_test": {
"full_name": "linux.gcc.mpi.serialization.integration.mpi",
"name": "integration.mpi",
"platform": {
"compiler": "gcc",
"extras": [
"mpi",
"serialization"
],
"os": "linux"
},
"platform_as_string": "linux.gcc.mpi.serialization",
"revision": {
"branch": "main",
"revision_id": 62158
},
"state": "failed",
"test_id": 858056
},
"summary": {
"failed": 1,
"failed_tests": [
"replica_docking"
],
"total": 29
},
"tests": {
"backbonegridsampler_nstruct_mode": {
"log": "",
"state": "passed"
},
"database_md5": {
"log": "",
"state": "passed"
},
"features_pdb_mpi": {
"log": "",
"state": "passed"
},
"helical_bundle_predict": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred_with_helix_globals": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_sequence": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_skipping_residues": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict_4level": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict_computing_pnear_to_all": {
"log": "",
"state": "passed"
},
"recon_design_mpi": {
"log": "",
"state": "passed"
},
"replica_docking": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62158/replica_docking/log and /home/benchmark/working_dir/commits:20747/replica_docking/log differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/logs/log_0 and /home/benchmark/working_dir/commits:20747/replica_docking/logs/log_0 differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/logs/log_1 and /home/benchmark/working_dir/commits:20747/replica_docking/logs/log_1 differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/logs/log_2 and /home/benchmark/working_dir/commits:20747/replica_docking/logs/log_2 differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/logs/log_3 and /home/benchmark/working_dir/commits:20747/replica_docking/logs/log_3 differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/output/decoys.out and /home/benchmark/working_dir/commits:20747/replica_docking/output/decoys.out differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/output/decoys_P_0001_traj.out and /home/benchmark/working_dir/commits:20747/replica_docking/output/decoys_P_0001_traj.out differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/output/decoys_P_0002_traj.out.oversized and /home/benchmark/working_dir/commits:20747/replica_docking/output/decoys_P_0002_traj.out.oversized differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/output/scores.fsc and /home/benchmark/working_dir/commits:20747/replica_docking/output/scores.fsc differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/tempering.stats and /home/benchmark/working_dir/commits:20747/replica_docking/tempering.stats differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/.test_got_timeout_kill.log and /home/benchmark/working_dir/commits:20747/replica_docking/.test_got_timeout_kill.log differ\r\nFiles /home/benchmark/working_dir/main:62158/replica_docking/trial.stats and /home/benchmark/working_dir/commits:20747/replica_docking/trial.stats differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62158/replica_docking/log /home/benchmark/working_dir/commits:20747/replica_docking/log\r\n8d7\r\n< ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n10a10\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n14c14\r\n< mpirun noticed that process rank 1 with PID 2526846 on node nobu-1 exited on signal 9 (Killed).\r\n---\r\n> mpirun noticed that process rank 3 with PID 3320537 on node hojo-2 exited on signal 9 (Killed).\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62158/replica_docking/logs/log_0 /home/benchmark/working_dir/commits:20747/replica_docking/logs/log_0\r\n1c1\r\n< core.init: (0) Rosetta version: 2025.17.post.dev+3.HEAD.ed69526 ed695263dca1bd3dfea93b5db5732b2ef4206e91 git@github.com:RosettaCommons/rosetta.git 2025-04-30T13:50:28\r\n---\r\n> core.init: (0) Rosetta version: 2025.19.post.dev+14.HEAD.c222ef9 c222ef9507e93f14065548d72615b7b66d479d1f git@github.com:RosettaCommons/rosetta.git 2025-05-09T15:14:36\r\n10c10\r\n< core.chemical.GlobalResidueTypeSet: (0) Total time to initialize 6.71 seconds.\r\n...truncated...\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< protocols.moves.TrialCounter: (2) RigidBodyPerturb trials= 29420; accepts= 0.1403; energy_drop/trial= -0.00029\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_04 trials= 2771; accepts= 0.3385; energy_drop/trial= -0.00125\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_07 trials= 2846; accepts= 0.3018; energy_drop/trial= -0.07837\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_10 trials= 2787; accepts= 0.3140; energy_drop/trial= -0.01043\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_13 trials= 2774; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_16 trials= 2761; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_19 trials= 2748; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_22 trials= 2707; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_25 trials= 2600; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_28 trials= 2628; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_31 trials= 2529; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.moves.TrialCounter: (2) br_CA_CA_34 trials= 2430; accepts= 1.0000; energy_drop/trial= 0.00000\r\n< protocols.canonical_sampling.SilentTrajectoryRecorder: (2) 59000 E=-1.05e+03 temp_level=1 temperature=1\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt to write non-ideal pose to silent-file...Automatically switching to binary silent-struct type\r\n< devel.replica_docking.IrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.CaIrmsdFilter: (2) compute Irms\r\n< devel.replica_docking.FnatFilter: (2) compute Fnat\r\n< devel.replica_docking.LrmsdFilter: (2) compute Lrmsd\r\n< devel.replica_docking.FnonnatFilter: (2) compute Fnonnat\r\n< core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14824 (in Radians)\r\n< core.io.silent: (2) detected attempt \nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n",
"state": "script failed"
},
"revold": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_beta_thioether_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_bondangle_bondlength": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_design": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_lanthionine": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide_reverse": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails_2": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_thioether_lariat": {
"log": "",
"state": "passed"
},
"threefold_symm_peptide_design": {
"log": "",
"state": "passed"
}
}
}