Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python-3.9.clang/707eb77cedeac3e91130adc5f9ccf882/bin/python3.9 ./scons.py bin mode=release cxx=clang extras= -j32
Running: unset __PYVENV_LAUNCHER__ && . /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/activate && cd /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration && python ./integration.py --mode=release --compiler=clang --extras= --timeout=480 -j32 --skip-comparison --additional_flags "-in:path:database_cache_dir /Volumes/scratch/b3.w/rosetta/commits/rosetta/.database-binaries/macclangrelease"
Running integration script...
Command line: unset __PYVENV_LAUNCHER__ && . /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/activate && cd /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration && python ./integration.py --mode=release --compiler=clang --extras= --timeout=480 -j32 --skip-comparison --additional_flags "-in:path:database_cache_dir /Volumes/scratch/b3.w/rosetta/commits/rosetta/.database-binaries/macclangrelease"
Using Rosetta source dir at: /Volumes/scratch/b3.w/rosetta/commits/rosetta/source
Using Rosetta database dir at:/Volumes/scratch/b3.w/rosetta/commits/rosetta/database
Current Versions Tested:
MAIN: a7b0eeecf9acff9497af62e110c1c8e6a957276d
TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85
DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92
Python: `/Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python`
Outdir: new
No correct command.sh file found for test_rosetta_thread_manager_basic_API. Skipping.
No correct command.sh file found for test_rosetta_thread_manager_advanced_API. Skipping.
No correct command.sh file found for proteinMPNN_model_perplexity. Skipping.
No correct command.sh file found for multithreaded_packrotamersmover. Skipping.
No correct command.sh file found for multithreaded_interaction_graph_accuracy_symm. Skipping.
No correct command.sh file found for multithreaded_interaction_graph_accuracy. Skipping.
No correct command.sh file found for multithreaded_fixbb. Skipping.
No correct command.sh file found for multithreaded_fastdesign. Skipping.
Running Test revold
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/revold/command.sh
No correct command.sh file found for bcl_fragment_mutate. Skipping.
No correct command.sh file found for antibody_cc. Skipping.
No correct command.sh file found for replica_docking. Skipping.
No correct command.sh file found for abinitio_with_trRosetta. Skipping.
No correct command.sh file found for trRosetta_test_predict_ubiquitin_init_by_bins. Skipping.
No correct command.sh file found for trRosettaProtocolMover. Skipping.
No correct command.sh file found for trRosetta_test_predict. Skipping.
No correct command.sh file found for smart_annealer. Skipping.
No correct command.sh file found for PTMPrediction. Skipping.
Running Test mp_f19_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_f19_relax/command.sh
No correct command.sh file found for mpi_simple_cycpep_predict_computing_pnear_to_all. Skipping.
No correct command.sh file found for recon_design_mpi. Skipping.
No correct command.sh file found for mpi_simple_cycpep_predict_4level. Skipping.
No correct command.sh file found for mpi_simple_cycpep_predict. Skipping.
No correct command.sh file found for features_pdb_mpi. Skipping.
Running Test app_exception_handling
ulimit -t 960 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/app_exception_handling/command.sh
Running Test dgdp_script
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dgdp_script/command.sh
Running Test simple_cycpep_predict_square_pyramidal_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_square_pyramidal_metal/command.sh
Running Test auto-drrafter_setup_run_R2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R2/command.sh
Running Test dgdp_aio
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dgdp_aio/command.sh
Running Test database_md5
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_md5/command.sh
Running Test ddG_of_mutation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_of_mutation/command.sh
Running Test antibody_H3
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_H3/command.sh
Running Test fast_relax_scripts
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fast_relax_scripts/command.sh
Running Test cyclization
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cyclization/command.sh
Running Test remodel
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel/command.sh
Running Test ccd_ends_graft_mover_rs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ccd_ends_graft_mover_rs/command.sh
Running Test glycopeptidedocking_diglyco_long
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycopeptidedocking_diglyco_long/command.sh
Running Test bundlegridsampler_composition_energy
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_composition_energy/command.sh
Running Test add_helix_sequence_constraints
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_helix_sequence_constraints/command.sh
Running Test glycan_tree_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_tree_relax/command.sh
Running Test crosslinkermover_octahedral
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_octahedral/command.sh
Running Test ligand_dock_ensemble
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_ensemble/command.sh
Running Test nonideal_rtmin
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/nonideal_rtmin/command.sh
Running Test ga_ligand_dock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock/command.sh
Running Test ddG_sym
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_sym/command.sh
Running Test mp_relax_w_ligand
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_relax_w_ligand/command.sh
Running Test buried_unsat_voids_hbnet_design_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design_symm/command.sh
Running Test add_helix_sequence_constraints_advanced_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_helix_sequence_constraints_advanced_setup/command.sh
Running Test auto-drrafter_setup_run_R1
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R1/command.sh
Running Test crosslinkermover_tma
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tma/command.sh
Running Test ppi_v3_suiteC
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteC/command.sh
Running Test peptiderive
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/peptiderive/command.sh
Running Test drrafter_run
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_run/command.sh
Running Test rna_denovo_lariat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_lariat/command.sh
Finished rna_denovo_lariat in 113 seconds [~ 55 test (6.748466257668712%) started, 760 in queue, 32 running]
Running Test voids_penalty_energy_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/voids_penalty_energy_design/command.sh
Finished crosslinkermover_tma in 113 seconds [~ 56 test (6.871165644171779%) started, 759 in queue, 32 running]
Running Test swm_dna_bridge
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_dna_bridge/command.sh
Finished ppi_v3_suiteC in 115 seconds [~ 57 test (6.993865030674846%) started, 758 in queue, 32 running]
Running Test flexpepdock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/flexpepdock/command.sh
Finished buried_unsat_voids_hbnet_design_symm in 118 seconds [~ 58 test (7.116564417177914%) started, 757 in queue, 32 running]
Running Test swm_rna_srl_triplet
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_srl_triplet/command.sh
Finished drrafter_run in 121 seconds [~ 59 test (7.2392638036809815%) started, 756 in queue, 32 running]
Finished peptiderive in 121 seconds [~ 60 test (7.361963190184049%) started, 755 in queue, 32 running]
Running Test ga_ligand_dock_macrocycle
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock_macrocycle/command.sh
Running Test validate_database
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/validate_database/command.sh
Finished auto-drrafter_setup_run_R1 in 122 seconds [~ 61 test (7.484662576687117%) started, 754 in queue, 32 running]
Running Test swa_protein_CCDclose
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_CCDclose/command.sh
Finished nonideal_rtmin in 127 seconds [~ 62 test (7.607361963190184%) started, 753 in queue, 32 running]
Running Test ddG_ensemble
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_ensemble/command.sh
Finished ddG_sym in 129 seconds [~ 63 test (7.730061349693251%) started, 752 in queue, 32 running]
Running Test coupled_moves
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coupled_moves/command.sh
Finished add_helix_sequence_constraints_advanced_setup in 132 seconds [~ 64 test (7.852760736196319%) started, 751 in queue, 32 running]
Running Test job_definition_script_vars
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/job_definition_script_vars/command.sh
Finished crosslinkermover_octahedral in 135 seconds [~ 65 test (7.975460122699387%) started, 750 in queue, 32 running]
Running Test swm_rna_base_pair_constraints
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_base_pair_constraints/command.sh
Finished mp_relax_w_ligand in 143 seconds [~ 66 test (8.098159509202453%) started, 749 in queue, 32 running]
Running Test rnp_ddg_relax_command_2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_command_2/command.sh
Finished ga_ligand_dock in 143 seconds [~ 67 test (8.220858895705522%) started, 748 in queue, 32 running]
Running Test test1_benchmark
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test1_benchmark/command.sh
Finished ligand_dock_ensemble in 144 seconds [~ 68 test (8.343558282208589%) started, 747 in queue, 32 running]
Running Test ppi_v3_suiteF
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteF/command.sh
Finished glycan_tree_relax in 152 seconds [~ 69 test (8.466257668711657%) started, 746 in queue, 32 running]
Running Test glycan_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_relax/command.sh
Finished ccd_ends_graft_mover_rs in 153 seconds [~ 70 test (8.588957055214724%) started, 745 in queue, 32 running]
Running Test docking_ensemble_prepack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_ensemble_prepack/command.sh
Finished bundlegridsampler_composition_energy in 157 seconds [~ 71 test (8.71165644171779%) started, 744 in queue, 32 running]
Running Test simple_cycpep_predict_trigonal_pyramidal_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_pyramidal_metal/command.sh
Finished glycopeptidedocking_diglyco_long in 159 seconds [~ 72 test (8.83435582822086%) started, 743 in queue, 32 running]
No correct command.sh file found for esm_model_perplexity. Skipping.
Running Test auto-drrafter_setup_run_R3
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R3/command.sh
Finished add_helix_sequence_constraints in 161 seconds [~ 74 test (9.079754601226995%) started, 741 in queue, 32 running]
Running Test antibody_designer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer/command.sh
Finished remodel in 164 seconds [~ 75 test (9.202453987730062%) started, 740 in queue, 32 running]
Running Test rna_denovo_dna_bridge
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_dna_bridge/command.sh
Finished cyclization in 169 seconds [~ 76 test (9.325153374233128%) started, 739 in queue, 32 running]
Running Test count_cycpep_sequences
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/count_cycpep_sequences/command.sh
Finished antibody_H3 in 170 seconds [~ 77 test (9.447852760736197%) started, 738 in queue, 32 running]
Running Test rnp_ddg_calc_mut
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_mut/command.sh
Finished fast_relax_scripts in 171 seconds [~ 78 test (9.570552147239264%) started, 737 in queue, 32 running]
Running Test helical_bundle_predict_psipred_with_helix_globals
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.sh
Finished ddG_of_mutation in 180 seconds [~ 79 test (9.693251533742332%) started, 736 in queue, 32 running]
Running Test simple_metrics_per_residue
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_per_residue/command.sh
Finished simple_cycpep_predict_square_pyramidal_metal in 204 seconds [~ 80 test (9.815950920245399%) started, 735 in queue, 32 running]
Running Test composition_energy_layers
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/composition_energy_layers/command.sh
Finished dgdp_aio in 205 seconds [~ 81 test (9.938650306748466%) started, 734 in queue, 32 running]
Running Test glycopeptidedocking
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycopeptidedocking/command.sh
Finished swm_dna_bridge in 94 seconds [~ 82 test (10.061349693251534%) started, 733 in queue, 32 running]
Running Test helical_bundle_predict_psipred
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.sh
Finished swa_protein_CCDclose in 95 seconds [~ 83 test (10.184049079754601%) started, 732 in queue, 32 running]
Running Test SnugDock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SnugDock/command.sh
Finished auto-drrafter_setup_run_R2 in 219 seconds [~ 84 test (10.306748466257668%) started, 731 in queue, 32 running]
Running Test swm_dna_loop
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_dna_loop/command.sh
Finished voids_penalty_energy_design in 107 seconds [~ 85 test (10.429447852760736%) started, 730 in queue, 32 running]
Finished flexpepdock in 104 seconds [~ 85 test (10.429447852760736%) started, 730 in queue, 31 running]
Running Test rosetta_scripts_loops
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_loops/command.sh
Running Test antibody_designer_xml
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer_xml/command.sh
Finished swm_rna_srl_triplet in 105 seconds [~ 87 test (10.674846625766872%) started, 728 in queue, 32 running]
Running Test hbnet_asymm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_asymm/command.sh
Finished ddG_ensemble in 99 seconds [~ 88 test (10.797546012269938%) started, 727 in queue, 32 running]
Running Test voids_penalty_energy_design_symmetry
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/voids_penalty_energy_design_symmetry/command.sh
Finished ga_ligand_dock_macrocycle in 107 seconds [~ 89 test (10.920245398773005%) started, 726 in queue, 32 running]
Running Test hydrate_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hydrate_relax/command.sh
Finished test1_benchmark in 85 seconds [~ 90 test (11.042944785276074%) started, 725 in queue, 32 running]
Running Test hbnet_energy
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy/command.sh
Finished coupled_moves in 101 seconds [~ 91 test (11.16564417177914%) started, 724 in queue, 32 running]
Running Test docking_ensemble
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_ensemble/command.sh
Finished job_definition_script_vars in 101 seconds [~ 92 test (11.28834355828221%) started, 723 in queue, 32 running]
Running Test crosslinkermover_square_pyramidal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_pyramidal/command.sh
Finished swm_rna_base_pair_constraints in 98 seconds [~ 93 test (11.411042944785276%) started, 722 in queue, 32 running]
Running Test bundlegridsampler_copy_pitch
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_copy_pitch/command.sh
Finished simple_cycpep_predict_trigonal_pyramidal_metal in 77 seconds [~ 94 test (11.533742331288343%) started, 721 in queue, 32 running]
Running Test dna_interface_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dna_interface_design/command.sh
Finished rnp_ddg_relax_command_2 in 94 seconds [~ 95 test (11.656441717791411%) started, 720 in queue, 32 running]
Running Test crosslinkermover_1_4_bbmb_s2_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_s2_symm/command.sh
Finished validate_database in 117 seconds [~ 96 test (11.779141104294478%) started, 719 in queue, 32 running]
Running Test crosslinkermover_tetrahedral_metal_d2_symmetry
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_d2_symmetry/command.sh
Finished ppi_v3_suiteF in 95 seconds [~ 97 test (11.901840490797547%) started, 718 in queue, 32 running]
Running Test vip
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/vip/command.sh
Finished glycan_relax in 93 seconds [~ 98 test (12.024539877300613%) started, 717 in queue, 32 running]
Running Test swa_rna_gagu_09_sample_virtual_ribose
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_09_sample_virtual_ribose/command.sh
Finished docking_ensemble_prepack in 95 seconds [~ 99 test (12.14723926380368%) started, 716 in queue, 32 running]
Running Test fiber_diffraction_fad
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fiber_diffraction_fad/command.sh
Finished auto-drrafter_setup_run_R3 in 94 seconds [~ 100 test (12.269938650306749%) started, 715 in queue, 32 running]
Running Test supercharge
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/supercharge/command.sh
Finished antibody_designer in 91 seconds [~ 101 test (12.392638036809815%) started, 714 in queue, 32 running]
Running Test molfile_to_params_polymer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/molfile_to_params_polymer/command.sh
Finished rna_denovo_dna_bridge in 90 seconds [~ 102 test (12.515337423312884%) started, 713 in queue, 32 running]
Running Test PolarDesign2019
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PolarDesign2019/command.sh
Finished rnp_ddg_calc_mut in 85 seconds [~ 103 test (12.63803680981595%) started, 712 in queue, 32 running]
Running Test simple_glycosylation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_glycosylation/command.sh
Finished dgdp_script in 258 seconds [~ 104 test (12.760736196319018%) started, 711 in queue, 32 running]
Running Test jd2test_mmCIFin_PDBout
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_mmCIFin_PDBout/command.sh
Finished helical_bundle_predict_psipred_with_helix_globals in 88 seconds [~ 105 test (12.883435582822086%) started, 710 in queue, 32 running]
Running Test jd2test_mmCIFIO
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_mmCIFIO/command.sh
Finished count_cycpep_sequences in 95 seconds [~ 106 test (13.006134969325153%) started, 709 in queue, 32 running]
Running Test helical_bundle_predict
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict/command.sh
sed: 1: "/Volumes/scratch/b3.w/r ...": bad flag in substitute command: 'o'
Finished database_md5 in 271 seconds [~ 107 test (13.128834355828221%) started, 708 in queue, 32 running]
Running Test crosslinkermover_square_planar
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_planar/command.sh
Finished simple_metrics_per_residue in 98 seconds [~ 108 test (13.251533742331288%) started, 707 in queue, 32 running]
Running Test bundlegridsampler_composition_energy_fract_range
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_composition_energy_fract_range/command.sh
Finished composition_energy_layers in 90 seconds [~ 109 test (13.374233128834355%) started, 706 in queue, 32 running]
Running Test LoopAnalyzer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LoopAnalyzer/command.sh
Finished glycopeptidedocking in 89 seconds [~ 110 test (13.496932515337424%) started, 705 in queue, 32 running]
Running Test inverse_rotamer_remodel
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/inverse_rotamer_remodel/command.sh
Finished helical_bundle_predict_psipred in 86 seconds [~ 111 test (13.61963190184049%) started, 704 in queue, 32 running]
Running Test relax_w_allatom_cst
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/relax_w_allatom_cst/command.sh
Finished SnugDock in 83 seconds [~ 112 test (13.742331288343559%) started, 703 in queue, 32 running]
Running Test helical_bundle_predict_skipping_residues
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.sh
Finished rosetta_scripts_loops in 82 seconds [~ 113 test (13.865030674846626%) started, 702 in queue, 32 running]
Running Test hbnet_energy_rosettascripts_linear
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy_rosettascripts_linear/command.sh
Finished voids_penalty_energy_design_symmetry in 78 seconds [~ 114 test (13.987730061349692%) started, 701 in queue, 32 running]
Running Test d_workflow
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/d_workflow/command.sh
Finished hbnet_asymm in 82 seconds [~ 115 test (14.110429447852761%) started, 700 in queue, 32 running]
Running Test control_flow_rs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/control_flow_rs/command.sh
Finished antibody_designer_xml in 87 seconds [~ 116 test (14.233128834355828%) started, 699 in queue, 32 running]
Running Test simple_metrics
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics/command.sh
Finished swm_dna_loop in 89 seconds [~ 117 test (14.355828220858896%) started, 698 in queue, 32 running]
Running Test crosslinkermover_tma_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tma_symm/command.sh
Finished docking_ensemble in 82 seconds [~ 118 test (14.478527607361963%) started, 697 in queue, 32 running]
Running Test rna_denovo_base_pair_constraints
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_base_pair_constraints/command.sh
Finished hydrate_relax in 85 seconds [~ 119 test (14.60122699386503%) started, 696 in queue, 32 running]
Running Test hotspot_hashing
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_hashing/command.sh
Finished hbnet_energy in 85 seconds [~ 120 test (14.723926380368098%) started, 695 in queue, 32 running]
Running Test helical_bundle_predict_sequence
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.sh
Finished crosslinkermover_square_pyramidal in 81 seconds [~ 121 test (14.846625766871165%) started, 694 in queue, 32 running]
Running Test design_glycans
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_glycans/command.sh
Finished vip in 76 seconds [~ 122 test (14.969325153374234%) started, 693 in queue, 32 running]
Running Test ligand_water_docking
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_water_docking/command.sh
Finished bundlegridsampler_copy_pitch in 84 seconds [~ 123 test (15.0920245398773%) started, 692 in queue, 32 running]
Running Test fiber_diffraction
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fiber_diffraction/command.sh
Finished crosslinkermover_1_4_bbmb_s2_symm in 82 seconds [~ 124 test (15.214723926380367%) started, 691 in queue, 32 running]
Finished crosslinkermover_tetrahedral_metal_d2_symmetry in 81 seconds [~ 124 test (15.214723926380367%) started, 691 in queue, 31 running]
Running Test beta_strand_homodimer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/beta_strand_homodimer/command.sh
Running Test polyaramid_test_trivial
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/polyaramid_test_trivial/command.sh
Finished dna_interface_design in 84 seconds [~ 126 test (15.460122699386503%) started, 689 in queue, 32 running]
Running Test crosslinkermover_1_4_bbmb_asymm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_asymm/command.sh
Finished fiber_diffraction_fad in 75 seconds [~ 127 test (15.582822085889571%) started, 688 in queue, 32 running]
Running Test membrane_relax_hbond
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_relax_hbond/command.sh
Finished swa_rna_gagu_09_sample_virtual_ribose in 83 seconds [~ 128 test (15.705521472392638%) started, 687 in queue, 32 running]
Finished supercharge in 76 seconds [~ 128 test (15.705521472392638%) started, 687 in queue, 31 running]
Running Test mr_protocols
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mr_protocols/command.sh
Running Test membrane_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_relax/command.sh
Finished simple_glycosylation in 75 seconds [~ 130 test (15.950920245398773%) started, 685 in queue, 32 running]
Running Test simple_cycpep_predict_cartesian
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cartesian/command.sh
Finished PolarDesign2019 in 82 seconds [~ 131 test (16.073619631901842%) started, 684 in queue, 32 running]
Running Test AlterSpecDisruption
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AlterSpecDisruption/command.sh
Finished jd2test_mmCIFin_PDBout in 82 seconds [~ 132 test (16.196319018404907%) started, 683 in queue, 32 running]
Running Test mp_domain_assembly_FtsQ
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_domain_assembly_FtsQ/command.sh
Finished jd2test_mmCIFIO in 81 seconds [~ 133 test (16.319018404907975%) started, 682 in queue, 32 running]
Running Test glycomutagenesis
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycomutagenesis/command.sh
Finished helical_bundle_predict in 77 seconds [~ 134 test (16.441717791411044%) started, 681 in queue, 32 running]
Running Test backrub
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub/command.sh
Finished molfile_to_params_polymer in 89 seconds [~ 135 test (16.56441717791411%) started, 680 in queue, 32 running]
Running Test autoNOE_rosetta
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/autoNOE_rosetta/command.sh
Finished crosslinkermover_square_planar in 78 seconds [~ 136 test (16.687116564417177%) started, 679 in queue, 32 running]
Running Test antibody_H3_camelid
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_H3_camelid/command.sh
Finished bundlegridsampler_composition_energy_fract_range in 77 seconds [~ 137 test (16.809815950920246%) started, 678 in queue, 32 running]
Running Test simple_cycpep_predict
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict/command.sh
Finished relax_w_allatom_cst in 71 seconds [~ 138 test (16.932515337423315%) started, 677 in queue, 32 running]
Running Test pertmin
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pertmin/command.sh
Finished inverse_rotamer_remodel in 72 seconds [~ 139 test (17.05521472392638%) started, 676 in queue, 32 running]
Running Test crosslinkermover_tetrahedral_metal_c2_symmetry
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_c2_symmetry/command.sh
Finished LoopAnalyzer in 74 seconds [~ 140 test (17.177914110429448%) started, 675 in queue, 32 running]
Running Test rs_loophash
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rs_loophash/command.sh
Finished helical_bundle_predict_skipping_residues in 73 seconds [~ 141 test (17.300613496932517%) started, 674 in queue, 32 running]
Running Test rnp_ddg_calc_wt
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_wt/command.sh
Finished d_workflow in 70 seconds [~ 142 test (17.42331288343558%) started, 673 in queue, 32 running]
Running Test hybridization
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hybridization/command.sh
Finished hbnet_energy_rosettascripts_linear in 76 seconds [~ 143 test (17.54601226993865%) started, 672 in queue, 32 running]
Running Test hts_io
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hts_io/command.sh
Finished crosslinkermover_tma_symm in 73 seconds [~ 144 test (17.66871165644172%) started, 671 in queue, 32 running]
Running Test swa_protein_prepack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_prepack/command.sh
Finished simple_metrics in 73 seconds [~ 145 test (17.791411042944784%) started, 670 in queue, 32 running]
Running Test swa_protein_loop_sampler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_loop_sampler/command.sh
Finished ligand_water_docking in 66 seconds [~ 146 test (17.914110429447852%) started, 669 in queue, 32 running]
Running Test crosslinkermover_square_planar_d2_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_planar_d2_symm/command.sh
Finished control_flow_rs in 77 seconds [~ 147 test (18.03680981595092%) started, 668 in queue, 32 running]
Running Test simple_cycpep_predict_anglelength
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_anglelength/command.sh
Finished rna_denovo_base_pair_constraints in 70 seconds [~ 148 test (18.15950920245399%) started, 667 in queue, 32 running]
Running Test rosetta_scripts_jd3
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_jd3/command.sh
Finished helical_bundle_predict_sequence in 70 seconds [~ 149 test (18.282208588957054%) started, 666 in queue, 32 running]
Running Test ligand_database_io
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_database_io/command.sh
Finished polyaramid_test_trivial in 66 seconds [~ 150 test (18.404907975460123%) started, 665 in queue, 32 running]
Finished crosslinkermover_1_4_bbmb_asymm in 66 seconds [~ 150 test (18.404907975460123%) started, 665 in queue, 31 running]
Running Test simple_cycpep_predict_setting
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_setting/command.sh
Running Test netcharge_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/netcharge_design/command.sh
Finished hotspot_hashing in 73 seconds [~ 152 test (18.650306748466257%) started, 663 in queue, 32 running]
Running Test fast_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fast_relax/command.sh
Finished beta_strand_homodimer in 68 seconds [~ 153 test (18.773006134969325%) started, 662 in queue, 32 running]
Running Test pmut_scan
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pmut_scan/command.sh
Finished fiber_diffraction in 70 seconds [~ 154 test (18.895705521472394%) started, 661 in queue, 32 running]
Running Test hbnet
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet/command.sh
Finished design_glycans in 74 seconds [~ 155 test (19.01840490797546%) started, 660 in queue, 32 running]
Running Test simple_cycpep_predict_tetrahedral_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal/command.sh
Finished mr_protocols in 60 seconds [~ 156 test (19.141104294478527%) started, 659 in queue, 32 running]
Running Test simple_cycpep_predict_angle
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_angle/command.sh
Finished mp_f19_relax in 390 seconds [~ 157 test (19.263803680981596%) started, 658 in queue, 32 running]
Running Test remodel_disulfides_rosettascripts
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_disulfides_rosettascripts/command.sh
Finished membrane_relax_hbond in 66 seconds [~ 158 test (19.386503067484664%) started, 657 in queue, 32 running]
Running Test mirror_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mirror_symm/command.sh
Finished simple_cycpep_predict_cartesian in 63 seconds [~ 159 test (19.50920245398773%) started, 656 in queue, 32 running]
Running Test bridge_chains
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bridge_chains/command.sh
Finished membrane_relax in 65 seconds [~ 160 test (19.631901840490798%) started, 655 in queue, 32 running]
Running Test swa_rna_erraser
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_erraser/command.sh
Finished AlterSpecDisruption in 62 seconds [~ 161 test (19.754601226993866%) started, 654 in queue, 32 running]
Running Test rna_denovo_fragment_homology_exclusion
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_fragment_homology_exclusion/command.sh
Finished mp_domain_assembly_FtsQ in 62 seconds [~ 162 test (19.87730061349693%) started, 653 in queue, 32 running]
Running Test perturb_helical_bundle_copying_pitch
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_copying_pitch/command.sh
Finished backrub in 62 seconds [~ 163 test (20.0%) started, 652 in queue, 32 running]
Running Test batch_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/batch_relax/command.sh
Finished glycomutagenesis in 64 seconds [~ 164 test (20.12269938650307%) started, 651 in queue, 32 running]
Running Test swm_l_rna
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_l_rna/command.sh
Finished autoNOE_rosetta in 65 seconds [~ 165 test (20.245398773006134%) started, 650 in queue, 32 running]
Running Test rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/command.sh
Finished antibody_H3_camelid in 62 seconds [~ 166 test (20.368098159509202%) started, 649 in queue, 32 running]
Running Test seed_ensemble_JD2_JI
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/seed_ensemble_JD2_JI/command.sh
Finished simple_cycpep_predict in 62 seconds [~ 167 test (20.49079754601227%) started, 648 in queue, 32 running]
Running Test symm_disulfidize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symm_disulfidize/command.sh
Finished rs_loophash in 59 seconds [~ 168 test (20.613496932515336%) started, 647 in queue, 32 running]
Running Test simple_cycpep_predict_trigonal_planar_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_planar_metal/command.sh
Finished crosslinkermover_tetrahedral_metal_c2_symmetry in 62 seconds [~ 169 test (20.736196319018404%) started, 646 in queue, 32 running]
Running Test ligand_dock_script
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_script/command.sh
Finished pertmin in 63 seconds [~ 170 test (20.858895705521473%) started, 645 in queue, 32 running]
Running Test simple_cycpep_predict_tbmb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tbmb/command.sh
Finished hybridization in 55 seconds [~ 171 test (20.98159509202454%) started, 644 in queue, 32 running]
Running Test mp_dock_ensemble
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_ensemble/command.sh
Finished rnp_ddg_calc_wt in 60 seconds [~ 172 test (21.104294478527606%) started, 643 in queue, 32 running]
Running Test farnesyl
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/farnesyl/command.sh
Finished swa_protein_loop_sampler in 55 seconds [~ 173 test (21.226993865030675%) started, 642 in queue, 32 running]
Running Test range_relax_w_cst
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/range_relax_w_cst/command.sh
Finished simple_cycpep_predict_tetrahedral_metal in 48 seconds [~ 174 test (21.349693251533743%) started, 641 in queue, 32 running]
Running Test motif_dna_packer_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_dna_packer_design/command.sh
Finished simple_cycpep_predict_setting in 52 seconds [~ 175 test (21.47239263803681%) started, 640 in queue, 32 running]
Running Test crosslinkermover_octahedral_s2_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_octahedral_s2_symm/command.sh
Finished hbnet in 51 seconds [~ 176 test (21.595092024539877%) started, 639 in queue, 32 running]
Running Test KIC_with_fragments
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_with_fragments/command.sh
Finished crosslinkermover_square_planar_d2_symm in 58 seconds [~ 177 test (21.717791411042946%) started, 638 in queue, 32 running]
Running Test test_degreaser
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_degreaser/command.sh
Finished swa_protein_prepack in 60 seconds [~ 178 test (21.84049079754601%) started, 637 in queue, 32 running]
Running Test repeat_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_relax/command.sh
Finished hts_io in 62 seconds [~ 179 test (21.96319018404908%) started, 636 in queue, 32 running]
Running Test remodel_helical_repeat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_helical_repeat/command.sh
Finished rosetta_scripts_jd3 in 57 seconds [~ 180 test (22.085889570552148%) started, 635 in queue, 32 running]
Running Test next_generation_KIC
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/next_generation_KIC/command.sh
Finished simple_cycpep_predict_anglelength in 58 seconds [~ 181 test (22.208588957055216%) started, 634 in queue, 32 running]
Running Test splice_out_H3_longer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_longer/command.sh
Finished netcharge_design in 56 seconds [~ 182 test (22.33128834355828%) started, 633 in queue, 32 running]
Running Test simple_cycpep_predict_tma
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tma/command.sh
Finished ligand_database_io in 58 seconds [~ 183 test (22.45398773006135%) started, 632 in queue, 32 running]
Running Test rna_puzzle12_P5P6P7_DMS
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle12_P5P6P7_DMS/command.sh
Finished fast_relax in 56 seconds [~ 184 test (22.57668711656442%) started, 631 in queue, 32 running]
Running Test docking_local_refine
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_local_refine/command.sh
Finished simple_cycpep_predict_angle in 54 seconds [~ 185 test (22.699386503067483%) started, 630 in queue, 32 running]
Running Test rna_denovo_symm_hack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_symm_hack/command.sh
Finished pmut_scan in 57 seconds [~ 186 test (22.822085889570552%) started, 629 in queue, 32 running]
Running Test cycpep_rigid_body_permutation_mover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_rigid_body_permutation_mover/command.sh
Finished revold in 445 seconds [~ 187 test (22.94478527607362%) started, 628 in queue, 32 running]
Running Test zinc_heterodimer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_heterodimer/command.sh
Finished mirror_symm in 55 seconds [~ 188 test (23.067484662576685%) started, 627 in queue, 32 running]
Running Test sdf_reader
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sdf_reader/command.sh
Finished bridge_chains in 52 seconds [~ 189 test (23.190184049079754%) started, 626 in queue, 32 running]
Running Test crankshaft_flip
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crankshaft_flip/command.sh
Finished remodel_disulfides_rosettascripts in 56 seconds [~ 190 test (23.312883435582823%) started, 625 in queue, 32 running]
Running Test AlignPDBInfoToSequences
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AlignPDBInfoToSequences/command.sh
Finished swa_rna_erraser in 55 seconds [~ 191 test (23.43558282208589%) started, 624 in queue, 32 running]
Running Test ga_ligand_dock_amino_acid
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock_amino_acid/command.sh
Finished rna_denovo_fragment_homology_exclusion in 52 seconds [~ 192 test (23.558282208588956%) started, 623 in queue, 32 running]
Running Test simple_cycpep_predict_octahedral_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_octahedral_metal/command.sh
Finished perturb_helical_bundle_copying_pitch in 50 seconds [~ 193 test (23.680981595092025%) started, 622 in queue, 32 running]
Running Test mp_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_relax/command.sh
Finished batch_relax in 54 seconds [~ 194 test (23.803680981595093%) started, 621 in queue, 32 running]
Running Test ppi_v3_suiteB
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteB/command.sh
Finished swm_l_rna in 52 seconds [~ 195 test (23.926380368098158%) started, 620 in queue, 32 running]
Running Test mp_find_interface
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_find_interface/command.sh
Finished rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation in 53 seconds [~ 196 test (24.049079754601227%) started, 619 in queue, 32 running]
Running Test hotspot_graft
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_graft/command.sh
Finished seed_ensemble_JD2_JI in 53 seconds [~ 197 test (24.171779141104295%) started, 618 in queue, 32 running]
Running Test fixbb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fixbb/command.sh
Finished simple_cycpep_predict_trigonal_planar_metal in 38 seconds [~ 198 test (24.29447852760736%) started, 617 in queue, 32 running]
Running Test remodel_disulfides
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_disulfides/command.sh
Finished symm_disulfidize in 51 seconds [~ 199 test (24.41717791411043%) started, 616 in queue, 32 running]
Running Test hbs_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbs_design/command.sh
Finished simple_cycpep_predict_tbmb in 43 seconds [~ 200 test (24.539877300613497%) started, 615 in queue, 32 running]
Running Test disulfidize_beta_cys
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/disulfidize_beta_cys/command.sh
Finished mp_dock_ensemble in 45 seconds [~ 201 test (24.662576687116566%) started, 614 in queue, 32 running]
Running Test buried_unsat_voids_hbnet_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design/command.sh
Finished simple_cycpep_predict_tma in 35 seconds [~ 202 test (24.78527607361963%) started, 613 in queue, 32 running]
Running Test bundlegridsampler_epsilon
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_epsilon/command.sh
Finished ligand_dock_script in 51 seconds [~ 203 test (24.9079754601227%) started, 612 in queue, 32 running]
Running Test TryDisulfPermutations
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/TryDisulfPermutations/command.sh
Finished farnesyl in 47 seconds [~ 204 test (25.030674846625768%) started, 611 in queue, 32 running]
Running Test swa_protein_combine_loops
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_combine_loops/command.sh
Finished range_relax_w_cst in 48 seconds [~ 205 test (25.153374233128833%) started, 610 in queue, 32 running]
Running Test mp_symdock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_symdock/command.sh
Finished crosslinkermover_octahedral_s2_symm in 47 seconds [~ 206 test (25.2760736196319%) started, 609 in queue, 32 running]
Running Test enzdes
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzdes/command.sh
Finished motif_dna_packer_design in 48 seconds [~ 207 test (25.39877300613497%) started, 608 in queue, 32 running]
Running Test entropy_correction
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/entropy_correction/command.sh
Finished test_degreaser in 45 seconds [~ 208 test (25.521472392638035%) started, 607 in queue, 32 running]
Running Test bundlereporter_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlereporter_filter/command.sh
Finished repeat_relax in 45 seconds [~ 209 test (25.644171779141104%) started, 606 in queue, 32 running]
Running Test secondary_structure_output
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/secondary_structure_output/command.sh
Finished rna_denovo_symm_hack in 43 seconds [~ 210 test (25.766871165644172%) started, 605 in queue, 32 running]
Running Test rna_denovo_new_FT_RNP_2prot_dens
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_RNP_2prot_dens/command.sh
Finished KIC_with_fragments in 47 seconds [~ 211 test (25.88957055214724%) started, 604 in queue, 32 running]
Running Test mp_domain_assembly
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_domain_assembly/command.sh
Finished remodel_helical_repeat in 47 seconds [~ 212 test (26.012269938650306%) started, 603 in queue, 32 running]
Finished docking_local_refine in 45 seconds [~ 212 test (26.012269938650306%) started, 603 in queue, 31 running]
Running Test generate_6Dloopclose
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/generate_6Dloopclose/command.sh
Running Test explicit_membrane
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/explicit_membrane/command.sh
Finished splice_out_H3_longer in 47 seconds [~ 214 test (26.257668711656443%) started, 601 in queue, 32 running]
Running Test docking_distance_constraints
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_distance_constraints/command.sh
Finished simple_cycpep_predict_octahedral_metal in 39 seconds [~ 215 test (26.380368098159508%) started, 600 in queue, 32 running]
Running Test UBQ_E2_thioester_extra_bodies
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester_extra_bodies/command.sh
Finished next_generation_KIC in 48 seconds [~ 216 test (26.503067484662576%) started, 599 in queue, 32 running]
Finished zinc_heterodimer in 45 seconds [~ 216 test (26.503067484662576%) started, 599 in queue, 31 running]
Running Test simple_cycpep_predict_bondangle_bondlength
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.sh
Running Test mhc_epitope
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mhc_epitope/command.sh
Finished rna_puzzle12_P5P6P7_DMS in 47 seconds [~ 218 test (26.74846625766871%) started, 597 in queue, 32 running]
Running Test small_molecule_lattice_dock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/small_molecule_lattice_dock/command.sh
Finished cycpep_rigid_body_permutation_mover in 46 seconds [~ 219 test (26.87116564417178%) started, 596 in queue, 32 running]
Running Test rna_denovo_RNP_refine_native
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_RNP_refine_native/command.sh
Finished crankshaft_flip in 45 seconds [~ 220 test (26.993865030674847%) started, 595 in queue, 32 running]
Running Test oop_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_design/command.sh
Finished sdf_reader in 46 seconds [~ 221 test (27.116564417177916%) started, 594 in queue, 32 running]
Running Test make_symmdef_file
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_symmdef_file/command.sh
Finished AlignPDBInfoToSequences in 46 seconds [~ 222 test (27.23926380368098%) started, 593 in queue, 32 running]
Running Test crosslinkermover_1_4_bbmb_c2_symmetry
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_c2_symmetry/command.sh
Finished ga_ligand_dock_amino_acid in 44 seconds [~ 223 test (27.36196319018405%) started, 592 in queue, 32 running]
No correct command.sh file found for trRosetta. Skipping.
Running Test SID_ERMS_prediction
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SID_ERMS_prediction/command.sh
Finished mp_relax in 43 seconds [~ 225 test (27.607361963190183%) started, 590 in queue, 32 running]
Running Test rna_denovo_RNP_low_res
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_RNP_low_res/command.sh
Finished mp_find_interface in 41 seconds [~ 226 test (27.73006134969325%) started, 589 in queue, 32 running]
Running Test ppi_v3_suiteE
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteE/command.sh
Finished ppi_v3_suiteB in 42 seconds [~ 227 test (27.85276073619632%) started, 588 in queue, 32 running]
Running Test ppi_v3_suiteA
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteA/command.sh
Finished hotspot_graft in 41 seconds [~ 228 test (27.975460122699385%) started, 587 in queue, 32 running]
Running Test kinematic_looprelax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/kinematic_looprelax/command.sh
Finished remodel_disulfides in 41 seconds [~ 229 test (28.098159509202453%) started, 586 in queue, 32 running]
Running Test hbnet_energy_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy_symm/command.sh
Finished fixbb in 43 seconds [~ 230 test (28.220858895705522%) started, 585 in queue, 32 running]
Running Test evolution
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/evolution/command.sh
Finished hbs_design in 41 seconds [~ 231 test (28.34355828220859%) started, 584 in queue, 32 running]
Running Test UBQ_E2_thioester
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester/command.sh
Finished disulfidize_beta_cys in 42 seconds [~ 232 test (28.466257668711656%) started, 583 in queue, 32 running]
Running Test simple_cycpep_predict_terminal_disulfide_tails_2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.sh
Finished buried_unsat_voids_hbnet_design in 40 seconds [~ 233 test (28.588957055214724%) started, 582 in queue, 32 running]
Running Test homodimer_fnd_ref2015_memb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/homodimer_fnd_ref2015_memb/command.sh
Finished bundlegridsampler_epsilon in 40 seconds [~ 234 test (28.711656441717793%) started, 581 in queue, 32 running]
Running Test docking_site_constraints
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_site_constraints/command.sh
Finished TryDisulfPermutations in 40 seconds [~ 235 test (28.834355828220858%) started, 580 in queue, 32 running]
Running Test cycpep_rdkit_metric
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_rdkit_metric/command.sh
Finished swa_protein_combine_loops in 40 seconds [~ 236 test (28.957055214723926%) started, 579 in queue, 32 running]
Running Test cycpep_design_pipeline
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_design_pipeline/command.sh
Finished enzdes in 40 seconds [~ 237 test (29.079754601226995%) started, 578 in queue, 32 running]
Running Test rna_denovo_new_libs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_libs/command.sh
Finished rna_denovo_new_FT_RNP_2prot_dens in 38 seconds [~ 238 test (29.20245398773006%) started, 577 in queue, 32 running]
Running Test ligand_dock_cholesterol
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_cholesterol/command.sh
Finished mp_domain_assembly in 37 seconds [~ 239 test (29.32515337423313%) started, 576 in queue, 32 running]
Running Test dock_glycans
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dock_glycans/command.sh
Finished secondary_structure_output in 38 seconds [~ 240 test (29.447852760736197%) started, 575 in queue, 32 running]
Running Test AnchoredDesign
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchoredDesign/command.sh
Finished bundlereporter_filter in 39 seconds [~ 241 test (29.570552147239265%) started, 574 in queue, 32 running]
Running Test symm_rotamer_boltzmann
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symm_rotamer_boltzmann/command.sh
Finished entropy_correction in 41 seconds [~ 242 test (29.69325153374233%) started, 573 in queue, 32 running]
Finished docking_distance_constraints in 37 seconds [~ 242 test (29.69325153374233%) started, 573 in queue, 31 running]
Finished simple_cycpep_predict_bondangle_bondlength in 36 seconds [~ 242 test (29.69325153374233%) started, 573 in queue, 30 running]
Running Test rna_farfar_block_stack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_block_stack/command.sh
Running Test bundlegridsampler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler/command.sh
Running Test rna_denovo_new_FT_2in_dens
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_2in_dens/command.sh
Finished mp_symdock in 43 seconds [~ 245 test (30.061349693251532%) started, 570 in queue, 32 running]
Finished generate_6Dloopclose in 38 seconds [~ 245 test (30.061349693251532%) started, 570 in queue, 31 running]
Running Test mixed_monte_carlo
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mixed_monte_carlo/command.sh
Running Test features_parallel
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_parallel/command.sh
Finished mhc_epitope in 37 seconds [~ 247 test (30.30674846625767%) started, 568 in queue, 32 running]
Finished rna_denovo_RNP_refine_native in 36 seconds [~ 247 test (30.30674846625767%) started, 568 in queue, 31 running]
Running Test splice_out_L3_longer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_longer/command.sh
Running Test splice_out_H1_H2_longer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_longer/command.sh
Finished explicit_membrane in 39 seconds [~ 249 test (30.552147239263803%) started, 566 in queue, 32 running]
Running Test simple_cycpep_predict_beta_thioether_lariat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.sh
Finished oop_design in 36 seconds [~ 250 test (30.67484662576687%) started, 565 in queue, 32 running]
Running Test rotamer_probability
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_probability/command.sh
Finished UBQ_E2_thioester_extra_bodies in 39 seconds [~ 251 test (30.79754601226994%) started, 564 in queue, 32 running]
Finished make_symmdef_file in 36 seconds [~ 251 test (30.79754601226994%) started, 564 in queue, 31 running]
Running Test iphold
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/iphold/command.sh
Running Test interaction_graph_summary_metric
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/interaction_graph_summary_metric/command.sh
Finished crosslinkermover_1_4_bbmb_c2_symmetry in 37 seconds [~ 253 test (31.042944785276074%) started, 562 in queue, 32 running]
Running Test genkic_sugars
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_sugars/command.sh
Finished SID_ERMS_prediction in 38 seconds [~ 254 test (31.165644171779142%) started, 561 in queue, 32 running]
Finished rna_denovo_RNP_low_res in 36 seconds [~ 254 test (31.165644171779142%) started, 561 in queue, 31 running]
Running Test farfar_mrna
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/farfar_mrna/command.sh
Running Test backrub_pilot
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub_pilot/command.sh
Finished small_molecule_lattice_dock in 42 seconds [~ 256 test (31.411042944785276%) started, 559 in queue, 32 running]
Running Test task_selector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/task_selector/command.sh
Finished ppi_v3_suiteE in 35 seconds [~ 257 test (31.533742331288344%) started, 558 in queue, 32 running]
Running Test netcharge_design_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/netcharge_design_symm/command.sh
Finished ppi_v3_suiteA in 35 seconds [~ 258 test (31.65644171779141%) started, 557 in queue, 32 running]
Running Test swa_protein_build_at_Nterminus
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_build_at_Nterminus/command.sh
Finished kinematic_looprelax in 36 seconds [~ 259 test (31.779141104294478%) started, 556 in queue, 32 running]
Running Test flexpepdock_abinitio
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/flexpepdock_abinitio/command.sh
Finished hbnet_energy_symm in 34 seconds [~ 260 test (31.901840490797547%) started, 555 in queue, 32 running]
Running Test favor_native_residue
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/favor_native_residue/command.sh
Finished evolution in 34 seconds [~ 261 test (32.02453987730061%) started, 554 in queue, 32 running]
Running Test constraints_metric
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/constraints_metric/command.sh
Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 29 seconds [~ 262 test (32.147239263803684%) started, 553 in queue, 32 running]
Running Test bundlegridsampler_design_nstruct_mode
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.sh
Finished UBQ_E2_thioester in 35 seconds [~ 263 test (32.26993865030675%) started, 552 in queue, 32 running]
Running Test swm_rna_move_inside_helix_by_jump
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_jump/command.sh
Finished homodimer_fnd_ref2015_memb in 33 seconds [~ 264 test (32.392638036809814%) started, 551 in queue, 32 running]
Running Test splice_in_4loops_shorter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_in_4loops_shorter/command.sh
Finished docking_site_constraints in 34 seconds [~ 265 test (32.515337423312886%) started, 550 in queue, 32 running]
Running Test rs_flexbbmoves
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rs_flexbbmoves/command.sh
Finished cycpep_rdkit_metric in 36 seconds [~ 266 test (32.63803680981595%) started, 549 in queue, 32 running]
Running Test ppi_v3_suiteG
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteG/command.sh
Finished rna_farfar_block_stack in 31 seconds [~ 267 test (32.760736196319016%) started, 548 in queue, 32 running]
Running Test ppi_v3_suiteD
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteD/command.sh
Finished cycpep_design_pipeline in 35 seconds [~ 268 test (32.88343558282209%) started, 547 in queue, 32 running]
Finished ligand_dock_cholesterol in 32 seconds [~ 268 test (32.88343558282209%) started, 547 in queue, 31 running]
Finished rna_denovo_new_FT_2in_dens in 31 seconds [~ 268 test (32.88343558282209%) started, 547 in queue, 30 running]
Finished mixed_monte_carlo in 30 seconds [~ 268 test (32.88343558282209%) started, 547 in queue, 29 running]
Running Test pose_sewing
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pose_sewing/command.sh
Running Test ncaa_fixbb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ncaa_fixbb/command.sh
Running Test features
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features/command.sh
Running Test cycpep_symmetry_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_symmetry_filter/command.sh
Finished rna_denovo_new_libs in 33 seconds [~ 272 test (33.374233128834355%) started, 543 in queue, 32 running]
Running Test cleanAlignment
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cleanAlignment/command.sh
Finished symm_rotamer_boltzmann in 32 seconds [~ 273 test (33.49693251533742%) started, 542 in queue, 32 running]
Running Test balancedKIC
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/balancedKIC/command.sh
Finished iphold in 29 seconds [~ 274 test (33.61963190184049%) started, 541 in queue, 32 running]
Running Test simple_metrics_b_factor
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_b_factor/command.sh
Finished AnchoredDesign in 33 seconds [~ 275 test (33.74233128834356%) started, 540 in queue, 32 running]
Finished splice_out_L3_longer in 31 seconds [~ 275 test (33.74233128834356%) started, 540 in queue, 31 running]
Running Test simple_grafting_movers
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_grafting_movers/command.sh
Running Test hbnet_use_input_rot
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_use_input_rot/command.sh
Finished features_parallel in 31 seconds [~ 277 test (33.987730061349694%) started, 538 in queue, 32 running]
Running Test Enzrevert_xml
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/Enzrevert_xml/command.sh
Finished splice_out_H1_H2_longer in 31 seconds [~ 278 test (34.11042944785276%) started, 537 in queue, 32 running]
Running Test swm_rna_singleloop
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_singleloop/command.sh
Finished dock_glycans in 34 seconds [~ 279 test (34.23312883435583%) started, 536 in queue, 32 running]
Running Test rosie_ligand_docking
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosie_ligand_docking/command.sh
Finished bundlegridsampler in 33 seconds [~ 280 test (34.355828220858896%) started, 535 in queue, 32 running]
Finished simple_cycpep_predict_beta_thioether_lariat in 31 seconds [~ 280 test (34.355828220858896%) started, 535 in queue, 31 running]
Running Test ligand_dock_7cpa
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_7cpa/command.sh
Running Test kinemage_grid_output
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/kinemage_grid_output/command.sh
Finished rotamer_probability in 31 seconds [~ 282 test (34.60122699386503%) started, 533 in queue, 32 running]
Running Test fold_from_loops
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_from_loops/command.sh
Finished interaction_graph_summary_metric in 31 seconds [~ 283 test (34.7239263803681%) started, 532 in queue, 32 running]
Running Test doug_dock_design_min_mod2_cal_cal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/doug_dock_design_min_mod2_cal_cal/command.sh
Finished genkic_sugars in 31 seconds [~ 284 test (34.84662576687116%) started, 531 in queue, 32 running]
No correct command.sh file found for trRosettaConstraintGenerator. Skipping.
Running Test HDXEnergy
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HDXEnergy/command.sh
Finished backrub_pilot in 31 seconds [~ 286 test (35.0920245398773%) started, 529 in queue, 32 running]
Running Test splice_out_L1_L2_longer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_longer/command.sh
Finished farfar_mrna in 31 seconds [~ 287 test (35.214723926380366%) started, 528 in queue, 32 running]
Running Test splice_in_4loops_longer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_in_4loops_longer/command.sh
Finished task_selector in 31 seconds [~ 288 test (35.33742331288344%) started, 527 in queue, 32 running]
Running Test simple_cycpep_predict_1_4_bbmb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_1_4_bbmb/command.sh
Finished swa_protein_build_at_Nterminus in 28 seconds [~ 289 test (35.4601226993865%) started, 526 in queue, 32 running]
Running Test hydrate
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hydrate/command.sh
Finished netcharge_design_symm in 30 seconds [~ 290 test (35.58282208588957%) started, 525 in queue, 32 running]
Running Test docking_full_protocol
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_full_protocol/command.sh
Finished flexpepdock_abinitio in 30 seconds [~ 291 test (35.70552147239264%) started, 524 in queue, 32 running]
Running Test dock_with_hotspot_place_simultaneously
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dock_with_hotspot_place_simultaneously/command.sh
Finished favor_native_residue in 30 seconds [~ 292 test (35.828220858895705%) started, 523 in queue, 32 running]
Running Test UBQ_Gp_LYX-Cterm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_Gp_LYX-Cterm/command.sh
Finished constraints_metric in 31 seconds [~ 293 test (35.95092024539877%) started, 522 in queue, 32 running]
Running Test threefold_symm_peptide_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefold_symm_peptide_design/command.sh
Finished bundlegridsampler_design_nstruct_mode in 29 seconds [~ 294 test (36.07361963190184%) started, 521 in queue, 32 running]
Finished simple_grafting_movers in 16 seconds [~ 294 test (36.07361963190184%) started, 521 in queue, 31 running]
Running Test splice_out_L3_same
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_same/command.sh
Running Test splice_out_H1_H2_same
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_same/command.sh
Finished simple_metrics_b_factor in 17 seconds [~ 296 test (36.31901840490798%) started, 519 in queue, 32 running]
Running Test simple_hbondstoatom
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_hbondstoatom/command.sh
Finished swm_rna_move_inside_helix_by_jump in 29 seconds [~ 297 test (36.441717791411044%) started, 518 in queue, 32 running]
Running Test simple_cycpep_predict_thioether_cis_sampling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_thioether_cis_sampling/command.sh
Finished splice_in_4loops_shorter in 29 seconds [~ 298 test (36.56441717791411%) started, 517 in queue, 32 running]
Running Test simple_cycpep_predict_symm_gly
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_symm_gly/command.sh
Finished rs_flexbbmoves in 30 seconds [~ 299 test (36.68711656441718%) started, 516 in queue, 32 running]
Running Test simple_cycpep_predict_cispro
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cispro/command.sh
Finished ppi_v3_suiteG in 31 seconds [~ 300 test (36.809815950920246%) started, 515 in queue, 32 running]
Running Test rosetta_scripts_include
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_include/command.sh
Finished pose_sewing in 29 seconds [~ 301 test (36.93251533742331%) started, 514 in queue, 32 running]
Running Test perturb_helical_bundle
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle/command.sh
Finished ppi_v3_suiteD in 31 seconds [~ 302 test (37.05521472392638%) started, 513 in queue, 32 running]
Finished cleanAlignment in 30 seconds [~ 302 test (37.05521472392638%) started, 513 in queue, 31 running]
Finished ligand_dock_7cpa in 29 seconds [~ 302 test (37.05521472392638%) started, 513 in queue, 30 running]
Running Test match_1n9l
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_1n9l/command.sh
Running Test genkic_lowmemory_mode
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_lowmemory_mode/command.sh
Running Test KIC_refine
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_refine/command.sh
Finished hbnet_use_input_rot in 29 seconds [~ 305 test (37.423312883435585%) started, 510 in queue, 32 running]
Finished swm_rna_singleloop in 29 seconds [~ 305 test (37.423312883435585%) started, 510 in queue, 31 running]
Running Test InterfaceAnalyzer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer/command.sh
Running Test pocket_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_relax/command.sh
Finished cycpep_symmetry_filter in 31 seconds [~ 307 test (37.668711656441715%) started, 508 in queue, 32 running]
Finished rosie_ligand_docking in 29 seconds [~ 307 test (37.668711656441715%) started, 508 in queue, 31 running]
Running Test multistage_rosetta_scripts
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/multistage_rosetta_scripts/command.sh
Running Test helical_bundle_nonideal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_nonideal/command.sh
Finished features in 31 seconds [~ 309 test (37.91411042944785%) started, 506 in queue, 32 running]
Running Test favor_coupling_tensor
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/favor_coupling_tensor/command.sh
Finished balancedKIC in 31 seconds [~ 310 test (38.03680981595092%) started, 505 in queue, 32 running]
Running Test KIC_vicinity
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_vicinity/command.sh
Finished Enzrevert_xml in 30 seconds [~ 311 test (38.15950920245399%) started, 504 in queue, 32 running]
Running Test torsion_restricted_sampling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/torsion_restricted_sampling/command.sh
Finished fold_from_loops in 30 seconds [~ 312 test (38.282208588957054%) started, 503 in queue, 32 running]
Running Test sequence_profile_constraints
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_profile_constraints/command.sh
Finished HDXEnergy in 29 seconds [~ 313 test (38.40490797546012%) started, 502 in queue, 32 running]
Running Test score12_docking
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score12_docking/command.sh
Finished ncaa_fixbb in 33 seconds [~ 314 test (38.52760736196319%) started, 501 in queue, 32 running]
Finished kinemage_grid_output in 31 seconds [~ 314 test (38.52760736196319%) started, 501 in queue, 31 running]
Running Test place_simultaneously
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/place_simultaneously/command.sh
Running Test bundlegridsampler_z1_offset
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_z1_offset/command.sh
Finished doug_dock_design_min_mod2_cal_cal in 30 seconds [~ 316 test (38.77300613496933%) started, 499 in queue, 32 running]
Running Test bundlegridsampler_z0_offset
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_z0_offset/command.sh
Finished splice_out_L1_L2_longer in 28 seconds [~ 317 test (38.895705521472394%) started, 498 in queue, 32 running]
Running Test auto-drrafter_final_results
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_final_results/command.sh
Finished splice_in_4loops_longer in 28 seconds [~ 318 test (39.01840490797546%) started, 497 in queue, 32 running]
Running Test symmetry_multicomponent
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetry_multicomponent/command.sh
Finished simple_cycpep_predict_1_4_bbmb in 28 seconds [~ 319 test (39.14110429447853%) started, 496 in queue, 32 running]
Finished hydrate in 28 seconds [~ 319 test (39.14110429447853%) started, 496 in queue, 31 running]
Running Test swm_protein_loop_sampler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_loop_sampler/command.sh
Running Test swm_beta_peptide_loop
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_beta_peptide_loop/command.sh
Finished docking_full_protocol in 29 seconds [~ 321 test (39.38650306748466%) started, 494 in queue, 32 running]
Running Test splice_out_L1_L2_same
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_same/command.sh
Finished simple_cycpep_predict_thioether_cis_sampling in 18 seconds [~ 322 test (39.50920245398773%) started, 493 in queue, 32 running]
Running Test simple_metric_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_filter/command.sh
Finished dock_with_hotspot_place_simultaneously in 28 seconds [~ 323 test (39.6319018404908%) started, 492 in queue, 32 running]
Running Test match_6cpa
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_6cpa/command.sh
Finished app_exception_handling in 599 seconds [~ 324 test (39.75460122699386%) started, 491 in queue, 32 running]
Running Test ligand_motif_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_design/command.sh
Finished UBQ_Gp_LYX-Cterm in 28 seconds [~ 325 test (39.877300613496935%) started, 490 in queue, 32 running]
Running Test density_refine
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_refine/command.sh
Finished threefold_symm_peptide_design in 27 seconds [~ 326 test (40.0%) started, 489 in queue, 32 running]
Running Test crosslinkermover_trigonal_pyramidal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal/command.sh
Finished splice_out_H1_H2_same in 27 seconds [~ 327 test (40.122699386503065%) started, 488 in queue, 32 running]
Running Test cart_min_glycans
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cart_min_glycans/command.sh
Finished splice_out_L3_same in 28 seconds [~ 328 test (40.24539877300614%) started, 487 in queue, 32 running]
Finished simple_hbondstoatom in 27 seconds [~ 328 test (40.24539877300614%) started, 487 in queue, 31 running]
Running Test backrub_interface_ddG
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub_interface_ddG/command.sh
Running Test loop_modeling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_modeling/command.sh
Finished simple_cycpep_predict_symm_gly in 27 seconds [~ 330 test (40.49079754601227%) started, 485 in queue, 32 running]
Running Test loop_grower_N_term_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_grower_N_term_symm/command.sh
Finished simple_cycpep_predict_cispro in 25 seconds [~ 331 test (40.61349693251534%) started, 484 in queue, 32 running]
Running Test jd2test_PDBin_mmCIFout
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout/command.sh
Finished rosetta_scripts_include in 26 seconds [~ 332 test (40.736196319018404%) started, 483 in queue, 32 running]
Running Test jd2test_PDBIO
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBIO/command.sh
Finished perturb_helical_bundle in 27 seconds [~ 333 test (40.85889570552147%) started, 482 in queue, 32 running]
Finished pocket_relax in 25 seconds [~ 333 test (40.85889570552147%) started, 482 in queue, 31 running]
Running Test inv_kin_lig_loop_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/inv_kin_lig_loop_design/command.sh
Running Test hbonds
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbonds/command.sh
Finished KIC_vicinity in 25 seconds [~ 335 test (41.104294478527606%) started, 480 in queue, 32 running]
Running Test design_w_custom_palette-NCAAs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-NCAAs/command.sh
Finished multistage_rosetta_scripts in 26 seconds [~ 336 test (41.22699386503067%) started, 479 in queue, 32 running]
Finished helical_bundle_nonideal in 26 seconds [~ 336 test (41.22699386503067%) started, 479 in queue, 31 running]
Finished torsion_restricted_sampling in 25 seconds [~ 336 test (41.22699386503067%) started, 479 in queue, 30 running]
Finished score12_docking in 24 seconds [~ 336 test (41.22699386503067%) started, 479 in queue, 29 running]
Running Test crosslinkermover_trigonal_planar
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_planar/command.sh
Running Test bin_initialization
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bin_initialization/command.sh
Running Test swm_general_polymer_sampler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_general_polymer_sampler/command.sh
Running Test splice_out_L3_shorter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_shorter/command.sh
Finished genkic_lowmemory_mode in 26 seconds [~ 340 test (41.717791411042946%) started, 475 in queue, 32 running]
Finished KIC_refine in 26 seconds [~ 340 test (41.717791411042946%) started, 475 in queue, 31 running]
Running Test simple_metric_features
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_features/command.sh
Running Test simple_glycosylation_alternate_AAs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_glycosylation_alternate_AAs/command.sh
Finished favor_coupling_tensor in 26 seconds [~ 342 test (41.96319018404908%) started, 473 in queue, 32 running]
Finished sequence_profile_constraints in 25 seconds [~ 342 test (41.96319018404908%) started, 473 in queue, 31 running]
Running Test simple_cycpep_predict_tetrahedral_metal_asp
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal_asp/command.sh
Running Test simple_cycpep_predict_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_design/command.sh
Finished place_simultaneously in 25 seconds [~ 344 test (42.20858895705521%) started, 471 in queue, 32 running]
Finished bundlegridsampler_z1_offset in 25 seconds [~ 344 test (42.20858895705521%) started, 471 in queue, 31 running]
Running Test score_only_silence
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_only_silence/command.sh
Running Test residue_energy_breakdown
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/residue_energy_breakdown/command.sh
Finished InterfaceAnalyzer in 27 seconds [~ 346 test (42.45398773006135%) started, 469 in queue, 32 running]
Running Test pepspec
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pepspec/command.sh
Finished bundlegridsampler_z0_offset in 25 seconds [~ 347 test (42.576687116564415%) started, 468 in queue, 32 running]
Finished symmetry_multicomponent in 23 seconds [~ 347 test (42.576687116564415%) started, 468 in queue, 31 running]
Running Test oligourea_predict
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oligourea_predict/command.sh
Running Test multistage_rosetta_scripts_clustering
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/multistage_rosetta_scripts_clustering/command.sh
Finished swm_protein_loop_sampler in 23 seconds [~ 349 test (42.82208588957055%) started, 466 in queue, 32 running]
Finished swm_beta_peptide_loop in 23 seconds [~ 349 test (42.82208588957055%) started, 466 in queue, 31 running]
Running Test membrane_abinitio
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_abinitio/command.sh
Running Test make_mainchain_potential
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential/command.sh
Finished simple_metric_filter in 21 seconds [~ 351 test (43.06748466257669%) started, 464 in queue, 32 running]
Running Test jd2test_PDBin_mmCIFout_extra_data_separate
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout_extra_data_separate/command.sh
Finished match_1n9l in 29 seconds [~ 352 test (43.190184049079754%) started, 463 in queue, 32 running]
Running Test design_w_custom_palette-CAAs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-CAAs/command.sh
Finished auto-drrafter_final_results in 26 seconds [~ 353 test (43.31288343558282%) started, 462 in queue, 32 running]
Running Test carbohydrates
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/carbohydrates/command.sh
Finished splice_out_L1_L2_same in 24 seconds [~ 354 test (43.43558282208589%) started, 461 in queue, 32 running]
Running Test bundlegridsampler_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_design/command.sh
Finished match_6cpa in 24 seconds [~ 355 test (43.558282208588956%) started, 460 in queue, 32 running]
Running Test RunSimpleMetric_b_factor_test
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RunSimpleMetric_b_factor_test/command.sh
Finished density_refine in 23 seconds [~ 356 test (43.68098159509202%) started, 459 in queue, 32 running]
Running Test tcrmodel
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/tcrmodel/command.sh
Finished ligand_motif_design in 24 seconds [~ 357 test (43.80368098159509%) started, 458 in queue, 32 running]
Running Test splice_out_H1_H2_shorter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_shorter/command.sh
Finished crosslinkermover_trigonal_pyramidal in 24 seconds [~ 358 test (43.92638036809816%) started, 457 in queue, 32 running]
Running Test simple_metrics_in_protocols
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_in_protocols/command.sh
Finished loop_modeling in 23 seconds [~ 359 test (44.04907975460123%) started, 456 in queue, 32 running]
Running Test simple_metric_cache
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_cache/command.sh
Finished cart_min_glycans in 24 seconds [~ 360 test (44.171779141104295%) started, 455 in queue, 32 running]
Running Test rna_puzzle11_H2H3H4_run3_connectU40
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle11_H2H3H4_run3_connectU40/command.sh
Finished backrub_interface_ddG in 24 seconds [~ 361 test (44.29447852760736%) started, 454 in queue, 32 running]
Running Test rna_farfar_noncanonical_hairpin
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_noncanonical_hairpin/command.sh
Finished simple_cycpep_predict_tetrahedral_metal_asp in 13 seconds [~ 362 test (44.41717791411043%) started, 453 in queue, 32 running]
Running Test mm_params
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mm_params/command.sh
Finished loop_grower_N_term_symm in 22 seconds [~ 363 test (44.5398773006135%) started, 452 in queue, 32 running]
Running Test minimize_with_elec_dens
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/minimize_with_elec_dens/command.sh
Finished tcrmodel in 9 seconds [~ 364 test (44.66257668711656%) started, 451 in queue, 32 running]
Running Test enumerative_sampling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enumerative_sampling/command.sh
Finished jd2test_PDBin_mmCIFout in 23 seconds [~ 365 test (44.785276073619634%) started, 450 in queue, 32 running]
Running Test centroid_from_fullatom
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/centroid_from_fullatom/command.sh
Finished jd2test_PDBIO in 22 seconds [~ 366 test (44.9079754601227%) started, 449 in queue, 32 running]
Finished simple_glycosylation_alternate_AAs in 21 seconds [~ 366 test (44.9079754601227%) started, 449 in queue, 31 running]
Running Test antibody_designer_camelid
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer_camelid/command.sh
Running Test AnchorFinder
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchorFinder/command.sh
Finished make_mainchain_potential in 20 seconds [~ 368 test (45.15337423312884%) started, 447 in queue, 32 running]
Running Test simple_cycpep_predict_thioether_lariat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.sh
Finished splice_out_L3_shorter in 22 seconds [~ 369 test (45.2760736196319%) started, 446 in queue, 32 running]
Running Test sasa_metric_options
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sasa_metric_options/command.sh
/Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_features/command.sh: line 12: dump.sql: No such file or directory
Finished simple_metric_features in 22 seconds [~ 370 test (45.39877300613497%) started, 445 in queue, 32 running]
Finished score_only_silence in 21 seconds [~ 370 test (45.39877300613497%) started, 445 in queue, 31 running]
Running Test motif_score_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_score_filter/command.sh
Running Test mhc_epitope_nmer_preload
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mhc_epitope_nmer_preload/command.sh
Finished inv_kin_lig_loop_design in 23 seconds [~ 372 test (45.644171779141104%) started, 443 in queue, 32 running]
Finished hbonds in 23 seconds [~ 372 test (45.644171779141104%) started, 443 in queue, 31 running]
Running Test mf_fixbb_des
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_fixbb_des/command.sh
Running Test glycan_anomers
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_anomers/command.sh
Finished bin_initialization in 23 seconds [~ 374 test (45.88957055214724%) started, 441 in queue, 32 running]
Finished simple_cycpep_predict_design in 22 seconds [~ 374 test (45.88957055214724%) started, 441 in queue, 31 running]
Finished pepspec in 22 seconds [~ 374 test (45.88957055214724%) started, 441 in queue, 30 running]
Finished membrane_abinitio in 21 seconds [~ 374 test (45.88957055214724%) started, 441 in queue, 29 running]
Running Test crosslinkermover_trigonal_pyramidal_c3_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal_c3_symm/command.sh
Running Test crosslinkermover_trigonal_planar_c3_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_planar_c3_symm/command.sh
Running Test bundlegridsampler_multirepeat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_multirepeat/command.sh
Running Test UBQ_Gp_CYD-CYD
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_Gp_CYD-CYD/command.sh
Finished crosslinkermover_trigonal_planar in 23 seconds [~ 378 test (46.38036809815951%) started, 437 in queue, 32 running]
Finished oligourea_predict in 22 seconds [~ 378 test (46.38036809815951%) started, 437 in queue, 31 running]
Finished multistage_rosetta_scripts_clustering in 22 seconds [~ 378 test (46.38036809815951%) started, 437 in queue, 30 running]
Running Test LayerSelector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerSelector/command.sh
Running Test splice_out_L1_L2_shorter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_shorter/command.sh
Running Test ncbb_packer_palette
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ncbb_packer_palette/command.sh
Finished design_w_custom_palette-NCAAs in 24 seconds [~ 381 test (46.74846625766871%) started, 434 in queue, 32 running]
Running Test match_xml
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_xml/command.sh
Finished jd2test_PDBin_mmCIFout_extra_data_separate in 22 seconds [~ 382 test (46.87116564417178%) started, 433 in queue, 32 running]
Running Test hbonds_sp2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbonds_sp2/command.sh
Finished swm_general_polymer_sampler in 26 seconds [~ 383 test (46.99386503067485%) started, 432 in queue, 32 running]
Finished design_w_custom_palette-CAAs in 23 seconds [~ 383 test (46.99386503067485%) started, 432 in queue, 31 running]
Finished carbohydrates in 22 seconds [~ 383 test (46.99386503067485%) started, 432 in queue, 30 running]
Finished bundlegridsampler_design in 21 seconds [~ 383 test (46.99386503067485%) started, 432 in queue, 29 running]
Running Test crosslinkermover_methyllanthionine
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_methyllanthionine/command.sh
Running Test add_constraints_to_current_conformation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_constraints_to_current_conformation/command.sh
Running Test InterfaceAnalyzer_metrics
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_metrics/command.sh
Running Test AnchoredPDBCreator
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchoredPDBCreator/command.sh
Finished residue_energy_breakdown in 25 seconds [~ 387 test (47.484662576687114%) started, 428 in queue, 32 running]
Running Test thermal_sampler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/thermal_sampler/command.sh
Finished simple_metrics_in_protocols in 19 seconds [~ 388 test (47.607361963190186%) started, 427 in queue, 32 running]
Running Test swa_protein_build_at_Cterminus
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_build_at_Cterminus/command.sh
Finished splice_out_H1_H2_shorter in 22 seconds [~ 389 test (47.73006134969325%) started, 426 in queue, 32 running]
Running Test splice_out_H3_same
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_same/command.sh
Finished RunSimpleMetric_b_factor_test in 25 seconds [~ 390 test (47.852760736196316%) started, 425 in queue, 32 running]
Running Test rollmover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rollmover/command.sh
Finished simple_metric_cache in 20 seconds [~ 391 test (47.97546012269939%) started, 424 in queue, 32 running]
Running Test recon_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/recon_design/command.sh
Finished rna_puzzle11_H2H3H4_run3_connectU40 in 22 seconds [~ 392 test (48.09815950920245%) started, 423 in queue, 32 running]
Running Test metropolis_hastings
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metropolis_hastings/command.sh
Finished rna_farfar_noncanonical_hairpin in 22 seconds [~ 393 test (48.22085889570552%) started, 422 in queue, 32 running]
Running Test ligand_dock_grid
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_grid/command.sh
Finished mm_params in 22 seconds [~ 394 test (48.34355828220859%) started, 421 in queue, 32 running]
Running Test density_denovo
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_denovo/command.sh
Finished minimize_with_elec_dens in 23 seconds [~ 395 test (48.466257668711656%) started, 420 in queue, 32 running]
Running Test broker
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/broker/command.sh
Finished enumerative_sampling in 23 seconds [~ 396 test (48.58895705521472%) started, 419 in queue, 32 running]
Running Test antibody_graft
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_graft/command.sh
Finished centroid_from_fullatom in 23 seconds [~ 397 test (48.71165644171779%) started, 418 in queue, 32 running]
Running Test UBQ_E2_thioester_two_ubiquitins
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester_two_ubiquitins/command.sh
Finished antibody_designer_camelid in 22 seconds [~ 398 test (48.83435582822086%) started, 417 in queue, 32 running]
Running Test ThreadingInputter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ThreadingInputter/command.sh
Finished ncbb_packer_palette in 21 seconds [~ 399 test (48.95705521472393%) started, 416 in queue, 32 running]
Running Test thread_local_tracers_check
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/thread_local_tracers_check/command.sh
Finished motif_score_filter in 22 seconds [~ 400 test (49.079754601226995%) started, 415 in queue, 32 running]
Running Test simple_cycpep_predict_square_planar_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_square_planar_metal/command.sh
Finished sasa_metric_options in 23 seconds [~ 401 test (49.20245398773006%) started, 414 in queue, 32 running]
Running Test posttranslationalmod_io
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/posttranslationalmod_io/command.sh
Finished AnchorFinder in 23 seconds [~ 402 test (49.32515337423313%) started, 413 in queue, 32 running]
Finished mhc_epitope_nmer_preload in 22 seconds [~ 402 test (49.32515337423313%) started, 413 in queue, 31 running]
Finished glycan_anomers in 22 seconds [~ 402 test (49.32515337423313%) started, 413 in queue, 30 running]
Running Test perturb_helical_bundle_setting
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_setting/command.sh
Running Test oligourea_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oligourea_design/command.sh
Running Test min_pack_min
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/min_pack_min/command.sh
Finished bundlegridsampler_multirepeat in 22 seconds [~ 405 test (49.693251533742334%) started, 410 in queue, 32 running]
Running Test ReadResfile_with_selector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ReadResfile_with_selector/command.sh
Finished UBQ_Gp_CYD-CYD in 22 seconds [~ 406 test (49.8159509202454%) started, 409 in queue, 32 running]
Finished LayerSelector in 22 seconds [~ 406 test (49.8159509202454%) started, 409 in queue, 31 running]
Finished splice_out_L1_L2_shorter in 22 seconds [~ 406 test (49.8159509202454%) started, 409 in queue, 30 running]
Running Test LayerDesign
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerDesign/command.sh
Running Test zinc_homodimer_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_homodimer_design/command.sh
Running Test startfrom_file
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/startfrom_file/command.sh
Finished mf_fixbb_des in 23 seconds [~ 409 test (50.1840490797546%) started, 406 in queue, 32 running]
Running Test splice_out_H3_shorter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_shorter/command.sh
Finished crosslinkermover_trigonal_pyramidal_c3_symm in 23 seconds [~ 410 test (50.306748466257666%) started, 405 in queue, 32 running]
Finished crosslinkermover_trigonal_planar_c3_symm in 23 seconds [~ 410 test (50.306748466257666%) started, 405 in queue, 31 running]
Running Test simple_cycpep_predict_peptoid
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_peptoid/command.sh
Running Test repack_with_elec_dens
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repack_with_elec_dens/command.sh
Finished thermal_sampler in 20 seconds [~ 412 test (50.5521472392638%) started, 403 in queue, 32 running]
Running Test pna
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pna/command.sh
Finished match_xml in 23 seconds [~ 413 test (50.67484662576687%) started, 402 in queue, 32 running]
Running Test glycan_sequon_scanner
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_sequon_scanner/command.sh
Finished hbonds_sp2 in 22 seconds [~ 414 test (50.79754601226994%) started, 401 in queue, 32 running]
Running Test glycan_refinment
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_refinment/command.sh
Finished AnchoredPDBCreator in 21 seconds [~ 415 test (50.920245398773005%) started, 400 in queue, 32 running]
Running Test enzscore_filter_metal_sym
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_metal_sym/command.sh
Finished crosslinkermover_methyllanthionine in 22 seconds [~ 416 test (51.04294478527607%) started, 399 in queue, 32 running]
Finished add_constraints_to_current_conformation in 22 seconds [~ 416 test (51.04294478527607%) started, 399 in queue, 31 running]
Running Test enzscore_filter_dimetal_sym
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_dimetal_sym/command.sh
Running Test coarse_rna_scoring
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coarse_rna_scoring/command.sh
Finished simple_cycpep_predict_thioether_lariat in 27 seconds [~ 418 test (51.28834355828221%) started, 397 in queue, 32 running]
Finished InterfaceAnalyzer_metrics in 23 seconds [~ 418 test (51.28834355828221%) started, 397 in queue, 31 running]
Running Test classic_relax_1a19
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/classic_relax_1a19/command.sh
Running Test backbonegridsampler_nstruct_mode
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.sh
Finished swa_protein_build_at_Cterminus in 20 seconds [~ 420 test (51.533742331288344%) started, 395 in queue, 32 running]
Running Test PeptideCyclizeMover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PeptideCyclizeMover/command.sh
Finished splice_out_H3_same in 21 seconds [~ 421 test (51.65644171779141%) started, 394 in queue, 32 running]
Running Test test_computed_saxs_spectrum
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_computed_saxs_spectrum/command.sh
Finished recon_design in 20 seconds [~ 422 test (51.77914110429448%) started, 393 in queue, 32 running]
Running Test swm_rna_checkpoint_partition
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_checkpoint_partition/command.sh
Finished rollmover in 20 seconds [~ 423 test (51.90184049079755%) started, 392 in queue, 32 running]
Running Test swm_protein_move_inside_helix_by_bond
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_move_inside_helix_by_bond/command.sh
Finished metropolis_hastings in 20 seconds [~ 424 test (52.02453987730061%) started, 391 in queue, 32 running]
Running Test simple_dna_test
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_dna_test/command.sh
Finished ligand_dock_grid in 21 seconds [~ 425 test (52.147239263803684%) started, 390 in queue, 32 running]
Running Test rosetta_scripts_hbond_options
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_hbond_options/command.sh
Finished density_denovo in 20 seconds [~ 426 test (52.26993865030675%) started, 389 in queue, 32 running]
Running Test ppk
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppk/command.sh
Finished broker in 20 seconds [~ 427 test (52.392638036809814%) started, 388 in queue, 32 running]
Running Test mp_ligand_interface
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_ligand_interface/command.sh
Finished antibody_graft in 20 seconds [~ 428 test (52.515337423312886%) started, 387 in queue, 32 running]
Running Test genkic_rama_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_rama_filter/command.sh
Finished UBQ_E2_thioester_two_ubiquitins in 20 seconds [~ 429 test (52.63803680981595%) started, 386 in queue, 32 running]
Running Test fuzzy
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fuzzy/command.sh
Finished zinc_homodimer_design in 17 seconds [~ 430 test (52.760736196319016%) started, 385 in queue, 32 running]
Running Test enzscore_filter_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_metal/command.sh
Finished perturb_helical_bundle_setting in 18 seconds [~ 431 test (52.88343558282209%) started, 384 in queue, 32 running]
Running Test enzscore_filter_dimetal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_dimetal/command.sh
Finished simple_cycpep_predict_square_planar_metal in 19 seconds [~ 432 test (53.00613496932515%) started, 383 in queue, 32 running]
Finished oligourea_design in 18 seconds [~ 432 test (53.00613496932515%) started, 383 in queue, 31 running]
Finished min_pack_min in 18 seconds [~ 432 test (53.00613496932515%) started, 383 in queue, 30 running]
Finished startfrom_file in 18 seconds [~ 432 test (53.00613496932515%) started, 383 in queue, 29 running]
Running Test ddG_scan
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_scan/command.sh
Running Test crosslinkermover_tetrahedral_metal_asp
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_asp/command.sh
Running Test crosslinkermover_lanthionine
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_lanthionine/command.sh
Running Test backbonegridsampler_multiresidue
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler_multiresidue/command.sh
Finished ThreadingInputter in 20 seconds [~ 436 test (53.49693251533742%) started, 379 in queue, 32 running]
Finished ReadResfile_with_selector in 18 seconds [~ 436 test (53.49693251533742%) started, 379 in queue, 31 running]
Finished splice_out_H3_shorter in 18 seconds [~ 436 test (53.49693251533742%) started, 379 in queue, 30 running]
Running Test symmetric_docking
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetric_docking/command.sh
Running Test sim_cryo
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sim_cryo/command.sh
Running Test rosetta_scripts_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_setup/command.sh
Finished posttranslationalmod_io in 19 seconds [~ 439 test (53.86503067484663%) started, 376 in queue, 32 running]
Finished LayerDesign in 18 seconds [~ 439 test (53.86503067484663%) started, 376 in queue, 31 running]
Running Test rna_denovo_base_pair_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_base_pair_setup/command.sh
Running Test repeat_propagate_v3
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate_v3/command.sh
Finished glycan_refinment in 17 seconds [~ 441 test (54.11042944785276%) started, 374 in queue, 32 running]
Running Test repeat_propagate
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate/command.sh
Finished glycan_sequon_scanner in 18 seconds [~ 442 test (54.23312883435583%) started, 373 in queue, 32 running]
Running Test protocol_metric
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/protocol_metric/command.sh
Finished simple_cycpep_predict_peptoid in 19 seconds [~ 443 test (54.355828220858896%) started, 372 in queue, 32 running]
Finished repack_with_elec_dens in 19 seconds [~ 443 test (54.355828220858896%) started, 372 in queue, 31 running]
Finished enzscore_filter_metal_sym in 18 seconds [~ 443 test (54.355828220858896%) started, 372 in queue, 30 running]
Running Test perturb_helical_bundle_z_offset
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_z_offset/command.sh
Running Test perturb_helical_bundle_epsilon
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_epsilon/command.sh
Running Test metalloprotein_abrelax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metalloprotein_abrelax/command.sh
Finished pna in 19 seconds [~ 446 test (54.7239263803681%) started, 369 in queue, 32 running]
Finished coarse_rna_scoring in 18 seconds [~ 446 test (54.7239263803681%) started, 369 in queue, 31 running]
Running Test grid_scores_features
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/grid_scores_features/command.sh
Running Test exclusively_shared_jumps
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/exclusively_shared_jumps/command.sh
Finished enzscore_filter_dimetal_sym in 18 seconds [~ 448 test (54.969325153374236%) started, 367 in queue, 32 running]
Finished backbonegridsampler_nstruct_mode in 17 seconds [~ 448 test (54.969325153374236%) started, 367 in queue, 31 running]
Running Test custom_basetype_packer_palette
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/custom_basetype_packer_palette/command.sh
Running Test crosslinkermover_thioether
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_thioether/command.sh
Finished classic_relax_1a19 in 18 seconds [~ 450 test (55.214723926380366%) started, 365 in queue, 32 running]
Running Test create_sequence_motif
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/create_sequence_motif/command.sh
Finished PeptideCyclizeMover in 17 seconds [~ 451 test (55.33742331288344%) started, 364 in queue, 32 running]
Running Test UnsatSelector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UnsatSelector/command.sh
Finished test_computed_saxs_spectrum in 17 seconds [~ 452 test (55.4601226993865%) started, 363 in queue, 32 running]
Running Test LayerDesign_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerDesign_symm/command.sh
Finished swm_protein_move_inside_helix_by_bond in 17 seconds [~ 453 test (55.58282208588957%) started, 362 in queue, 32 running]
Running Test FloppyTail
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FloppyTail/command.sh
Finished swm_rna_checkpoint_partition in 17 seconds [~ 454 test (55.70552147239264%) started, 361 in queue, 32 running]
Running Test FlipChirality
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FlipChirality/command.sh
Finished simple_dna_test in 16 seconds [~ 455 test (55.828220858895705%) started, 360 in queue, 32 running]
Running Test ContactMolecularSurface
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ContactMolecularSurface/command.sh
Finished ppk in 16 seconds [~ 456 test (55.95092024539877%) started, 359 in queue, 32 running]
Running Test write_mol_file
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/write_mol_file/command.sh
Finished genkic_rama_filter in 16 seconds [~ 457 test (56.07361963190184%) started, 358 in queue, 32 running]
Running Test vancomycin
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/vancomycin/command.sh
Finished mp_ligand_interface in 17 seconds [~ 458 test (56.19631901840491%) started, 357 in queue, 32 running]
Running Test threefoldlinkermover_tbmb_symmetric
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefoldlinkermover_tbmb_symmetric/command.sh
Finished fuzzy in 17 seconds [~ 459 test (56.31901840490798%) started, 356 in queue, 32 running]
Running Test threefoldlinkermover_tbmb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefoldlinkermover_tbmb/command.sh
Finished enzscore_filter_metal in 16 seconds [~ 460 test (56.441717791411044%) started, 355 in queue, 32 running]
Finished rosetta_scripts_setup in 15 seconds [~ 460 test (56.441717791411044%) started, 355 in queue, 31 running]
Running Test symmetry_data_resource
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetry_data_resource/command.sh
Running Test symmetric_cycpep_align_and_symmetrize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetric_cycpep_align_and_symmetrize/command.sh
Finished rna_denovo_base_pair_setup in 15 seconds [~ 462 test (56.68711656441718%) started, 353 in queue, 32 running]
Finished repeat_propagate_v3 in 15 seconds [~ 462 test (56.68711656441718%) started, 353 in queue, 31 running]
Running Test sample_seq_from_probs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sample_seq_from_probs/command.sh
Running Test rotamer_recovery
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_recovery/command.sh
Finished enzscore_filter_dimetal in 16 seconds [~ 464 test (56.93251533742331%) started, 351 in queue, 32 running]
Finished crosslinkermover_tetrahedral_metal_asp in 16 seconds [~ 464 test (56.93251533742331%) started, 351 in queue, 31 running]
Finished crosslinkermover_lanthionine in 16 seconds [~ 464 test (56.93251533742331%) started, 351 in queue, 30 running]
Running Test rna_farfar_syn_chi_res
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_syn_chi_res/command.sh
Running Test resource_database_locator
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/resource_database_locator/command.sh
Running Test res_lipo_ref2015_memb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/res_lipo_ref2015_memb/command.sh
Finished repeat_propagate in 15 seconds [~ 467 test (57.30061349693251%) started, 348 in queue, 32 running]
Finished protocol_metric in 15 seconds [~ 467 test (57.30061349693251%) started, 348 in queue, 31 running]
Running Test repeat_propagate_v2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate_v2/command.sh
Running Test real_virt_mover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/real_virt_mover/command.sh
Finished backbonegridsampler_multiresidue in 16 seconds [~ 469 test (57.54601226993865%) started, 346 in queue, 32 running]
Running Test readin_dna_rna_protein
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/readin_dna_rna_protein/command.sh
Finished sim_cryo in 16 seconds [~ 470 test (57.668711656441715%) started, 345 in queue, 32 running]
Running Test rdkit_metrics
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rdkit_metrics/command.sh
Finished symmetric_docking in 17 seconds [~ 471 test (57.79141104294479%) started, 344 in queue, 32 running]
Finished perturb_helical_bundle_z_offset in 15 seconds [~ 471 test (57.79141104294479%) started, 344 in queue, 31 running]
Finished perturb_helical_bundle_epsilon in 15 seconds [~ 471 test (57.79141104294479%) started, 344 in queue, 30 running]
Finished exclusively_shared_jumps in 15 seconds [~ 471 test (57.79141104294479%) started, 344 in queue, 29 running]
Running Test rama_mutation_selector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rama_mutation_selector/command.sh
Running Test pna_base_pairs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pna_base_pairs/command.sh
Running Test mp_span_ang_ref2015_memb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_span_ang_ref2015_memb/command.sh
Running Test mp_quick_relax_ref2015_memb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_quick_relax_ref2015_memb/command.sh
Finished ddG_scan in 18 seconds [~ 475 test (58.282208588957054%) started, 340 in queue, 32 running]
Finished metalloprotein_abrelax in 16 seconds [~ 475 test (58.282208588957054%) started, 340 in queue, 31 running]
Running Test mf_flexbb_sc
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_flexbb_sc/command.sh
Running Test make_rot_lib
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_rot_lib/command.sh
Finished custom_basetype_packer_palette in 16 seconds [~ 477 test (58.52760736196319%) started, 338 in queue, 32 running]
Finished crosslinkermover_thioether in 16 seconds [~ 477 test (58.52760736196319%) started, 338 in queue, 31 running]
Running Test loop_creation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_creation/command.sh
Running Test genkic_ramaprepro_sampling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_ramaprepro_sampling/command.sh
Finished create_sequence_motif in 15 seconds [~ 479 test (58.77300613496933%) started, 336 in queue, 32 running]
Finished UnsatSelector in 15 seconds [~ 479 test (58.77300613496933%) started, 336 in queue, 31 running]
Running Test features_pdb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_pdb/command.sh
Running Test database_session_resource
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_session_resource/command.sh
Finished grid_scores_features in 17 seconds [~ 481 test (59.01840490797546%) started, 334 in queue, 32 running]
Running Test cst_info
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cst_info/command.sh
Finished LayerDesign_symm in 15 seconds [~ 482 test (59.14110429447853%) started, 333 in queue, 32 running]
Running Test crosslinkermover_tetrahedral_metal
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal/command.sh
Finished FloppyTail in 15 seconds [~ 483 test (59.263803680981596%) started, 332 in queue, 32 running]
Running Test bin_perturbation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bin_perturbation/command.sh
Finished FlipChirality in 15 seconds [~ 484 test (59.38650306748466%) started, 331 in queue, 32 running]
Running Test autosetup_metals_centroid
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/autosetup_metals_centroid/command.sh
Finished rosetta_scripts_hbond_options in 31 seconds [~ 485 test (59.50920245398773%) started, 330 in queue, 32 running]
Running Test RBOut
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RBOut/command.sh
Finished ContactMolecularSurface in 17 seconds [~ 486 test (59.6319018404908%) started, 329 in queue, 32 running]
Running Test PDB_diagnostic
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PDB_diagnostic/command.sh
Finished write_mol_file in 15 seconds [~ 487 test (59.75460122699386%) started, 328 in queue, 32 running]
Running Test InterfaceDdG
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceDdG/command.sh
Finished vancomycin in 13 seconds [~ 488 test (59.877300613496935%) started, 327 in queue, 32 running]
Running Test DumpTrajectoryEnergy_packing
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DumpTrajectoryEnergy_packing/command.sh
Finished threefoldlinkermover_tbmb_symmetric in 14 seconds [~ 489 test (60.0%) started, 326 in queue, 32 running]
Running Test ConsensusLoopDesign
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ConsensusLoopDesign/command.sh
Finished threefoldlinkermover_tbmb in 15 seconds [~ 490 test (60.122699386503065%) started, 325 in queue, 32 running]
Running Test BFactorSelector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/BFactorSelector/command.sh
Finished rotamer_recovery in 13 seconds [~ 491 test (60.24539877300614%) started, 324 in queue, 32 running]
Running Test swm_rna_fourwayjunction
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_fourwayjunction/command.sh
Finished symmetry_data_resource in 14 seconds [~ 492 test (60.3680981595092%) started, 323 in queue, 32 running]
Finished rna_farfar_syn_chi_res in 13 seconds [~ 492 test (60.3680981595092%) started, 323 in queue, 31 running]
Running Test swm_protein_move_inside_coiledcoil_by_bond
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_move_inside_coiledcoil_by_bond/command.sh
Running Test swm_protein_CCDmove
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_CCDmove/command.sh
Finished symmetric_cycpep_align_and_symmetrize in 14 seconds [~ 494 test (60.61349693251534%) started, 321 in queue, 32 running]
Running Test swa_rna_gagu_15_combine_long_loop_sampling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_15_combine_long_loop_sampling/command.sh
Finished repeat_propagate_v2 in 14 seconds [~ 495 test (60.736196319018404%) started, 320 in queue, 32 running]
Running Test smallmover_resselector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/smallmover_resselector/command.sh
Finished sample_seq_from_probs in 15 seconds [~ 496 test (60.85889570552147%) started, 319 in queue, 32 running]
Finished res_lipo_ref2015_memb in 14 seconds [~ 496 test (60.85889570552147%) started, 319 in queue, 31 running]
Running Test sequence_recovery
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_recovery/command.sh
Running Test selected_residue_count_metric
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/selected_residue_count_metric/command.sh
Finished real_virt_mover in 15 seconds [~ 498 test (61.104294478527606%) started, 317 in queue, 32 running]
Finished pna_base_pairs in 14 seconds [~ 498 test (61.104294478527606%) started, 317 in queue, 31 running]
Running Test rna_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_design/command.sh
Running Test rna_assemble
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_assemble/command.sh
Finished rdkit_metrics in 15 seconds [~ 500 test (61.34969325153374%) started, 315 in queue, 32 running]
Finished mp_span_ang_ref2015_memb in 14 seconds [~ 500 test (61.34969325153374%) started, 315 in queue, 31 running]
Running Test genkic_bin_perturbing
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_perturbing/command.sh
Running Test fold_cst_new
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_cst_new/command.sh
Finished readin_dna_rna_protein in 15 seconds [~ 502 test (61.59509202453988%) started, 313 in queue, 32 running]
Finished rama_mutation_selector in 15 seconds [~ 502 test (61.59509202453988%) started, 313 in queue, 31 running]
Finished mp_quick_relax_ref2015_memb in 14 seconds [~ 502 test (61.59509202453988%) started, 313 in queue, 30 running]
Running Test enzscore_filter_ligand
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_ligand/command.sh
Running Test dihedral_constraint_generator
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dihedral_constraint_generator/command.sh
Running Test cluster_alns
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_alns/command.sh
Finished make_rot_lib in 14 seconds [~ 505 test (61.96319018404908%) started, 310 in queue, 32 running]
Running Test add_job_pair_data
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_job_pair_data/command.sh
Finished resource_database_locator in 16 seconds [~ 506 test (62.08588957055215%) started, 309 in queue, 32 running]
Finished genkic_ramaprepro_sampling in 14 seconds [~ 506 test (62.08588957055215%) started, 309 in queue, 31 running]
Running Test StrandHelixGeometryFilter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/StrandHelixGeometryFilter/command.sh
Running Test StrandCurvatureByLevels
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/StrandCurvatureByLevels/command.sh
Finished loop_creation in 15 seconds [~ 508 test (62.331288343558285%) started, 307 in queue, 32 running]
Running Test SecondaryStructureFilter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SecondaryStructureFilter/command.sh
Finished mf_flexbb_sc in 16 seconds [~ 509 test (62.45398773006135%) started, 306 in queue, 32 running]
Running Test PeptideStubMover_prependRepeat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PeptideStubMover_prependRepeat/command.sh
Finished database_session_resource in 15 seconds [~ 510 test (62.576687116564415%) started, 305 in queue, 32 running]
Running Test OversaturatedHbondAcceptorFilter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/OversaturatedHbondAcceptorFilter/command.sh
Finished bin_perturbation in 14 seconds [~ 511 test (62.69938650306749%) started, 304 in queue, 32 running]
Running Test MutateResidue_selector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/MutateResidue_selector/command.sh
Finished crosslinkermover_tetrahedral_metal in 15 seconds [~ 512 test (62.82208588957055%) started, 303 in queue, 32 running]
Running Test LoopLengthChange
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LoopLengthChange/command.sh
Finished cst_info in 15 seconds [~ 513 test (62.94478527607362%) started, 302 in queue, 32 running]
Running Test HelixBendFilter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HelixBendFilter/command.sh
Finished autosetup_metals_centroid in 14 seconds [~ 514 test (63.06748466257669%) started, 301 in queue, 32 running]
Running Test FilterReportAsPoseExtraScoresMover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FilterReportAsPoseExtraScoresMover/command.sh
Finished features_pdb in 17 seconds [~ 515 test (63.190184049079754%) started, 300 in queue, 32 running]
Running Test FavorSequenceProfileMover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FavorSequenceProfileMover/command.sh
Finished RBOut in 14 seconds [~ 516 test (63.31288343558282%) started, 299 in queue, 32 running]
Running Test DumpTrajectoryEnergy
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DumpTrajectoryEnergy/command.sh
Finished DumpTrajectoryEnergy_packing in 15 seconds [~ 517 test (63.43558282208589%) started, 298 in queue, 32 running]
Running Test AddConstraintsToCurrentConformationMover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AddConstraintsToCurrentConformationMover/command.sh
Finished ConsensusLoopDesign in 15 seconds [~ 518 test (63.558282208588956%) started, 297 in queue, 32 running]
Running Test swm_rna_protonated_adenosine
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_protonated_adenosine/command.sh
Finished PDB_diagnostic in 18 seconds [~ 519 test (63.68098159509202%) started, 296 in queue, 32 running]
Running Test swa_rna_gagu_23_append_and_kic_close
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_23_append_and_kic_close/command.sh
Finished swm_rna_fourwayjunction in 13 seconds [~ 520 test (63.80368098159509%) started, 295 in queue, 32 running]
Running Test swa_rna_gagu_22_prepend_and_kic_close
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_22_prepend_and_kic_close/command.sh
Finished swm_protein_move_inside_coiledcoil_by_bond in 13 seconds [~ 521 test (63.92638036809816%) started, 294 in queue, 32 running]
Finished swm_protein_CCDmove in 13 seconds [~ 521 test (63.92638036809816%) started, 294 in queue, 31 running]
Running Test swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/command.sh
Running Test swa_rna_gagu_13_chunk_combination_and_closure
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_13_chunk_combination_and_closure/command.sh
Finished BFactorSelector in 15 seconds [~ 523 test (64.1717791411043%) started, 292 in queue, 32 running]
Running Test swa_rna_gagu_10_prepend_and_ccd_close
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_10_prepend_and_ccd_close/command.sh
Finished swa_rna_gagu_15_combine_long_loop_sampling in 14 seconds [~ 524 test (64.29447852760737%) started, 291 in queue, 32 running]
Running Test stored_residue_subset
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/stored_residue_subset/command.sh
Finished smallmover_resselector in 13 seconds [~ 525 test (64.41717791411043%) started, 290 in queue, 32 running]
Running Test simple_cycpep_predict_terminal_disulfide_internal_permutations
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_internal_permutations/command.sh
Finished selected_residue_count_metric in 14 seconds [~ 526 test (64.5398773006135%) started, 289 in queue, 32 running]
Finished genkic_bin_perturbing in 13 seconds [~ 526 test (64.5398773006135%) started, 289 in queue, 31 running]
Running Test simple_cycpep_predict_sidechain_isopeptide
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.sh
Running Test oop_dock_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_dock_design/command.sh
Finished rna_design in 14 seconds [~ 528 test (64.78527607361963%) started, 287 in queue, 32 running]
Running Test mp_symmetry_load
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_symmetry_load/command.sh
Finished sequence_recovery in 15 seconds [~ 529 test (64.9079754601227%) started, 286 in queue, 32 running]
Finished cluster_alns in 14 seconds [~ 529 test (64.9079754601227%) started, 286 in queue, 31 running]
Running Test mf_fixbb_sc
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_fixbb_sc/command.sh
Running Test genkic_dihedral_copying
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_dihedral_copying/command.sh
Finished rna_assemble in 14 seconds [~ 531 test (65.15337423312883%) started, 284 in queue, 32 running]
Finished fold_cst_new in 14 seconds [~ 531 test (65.15337423312883%) started, 284 in queue, 31 running]
Finished enzscore_filter_ligand in 14 seconds [~ 531 test (65.15337423312883%) started, 284 in queue, 30 running]
Finished dihedral_constraint_generator in 14 seconds [~ 531 test (65.15337423312883%) started, 284 in queue, 29 running]
Finished add_job_pair_data in 13 seconds [~ 531 test (65.15337423312883%) started, 284 in queue, 28 running]
Running Test design_w_custom_palette-RNA
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-RNA/command.sh
Running Test density_refine_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_refine_symm/command.sh
Running Test dehydro_aa_patch
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dehydro_aa_patch/command.sh
Running Test buried_area_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_area_filter/command.sh
Running Test ambiguous_nmr_distance_constraint
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ambiguous_nmr_distance_constraint/command.sh
Finished InterfaceDdG in 22 seconds [~ 536 test (65.76687116564418%) started, 279 in queue, 32 running]
Running Test SSElementSelector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SSElementSelector/command.sh
Finished StrandHelixGeometryFilter in 14 seconds [~ 537 test (65.88957055214723%) started, 278 in queue, 32 running]
Running Test symmetrical_residue_selector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetrical_residue_selector/command.sh
Finished StrandCurvatureByLevels in 14 seconds [~ 538 test (66.0122699386503%) started, 277 in queue, 32 running]
Running Test swm_build_full_model
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_build_full_model/command.sh
Finished SecondaryStructureFilter in 14 seconds [~ 539 test (66.13496932515338%) started, 276 in queue, 32 running]
Running Test swm_add_rosettascripts
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_add_rosettascripts/command.sh
Finished PeptideStubMover_prependRepeat in 14 seconds [~ 540 test (66.25766871165644%) started, 275 in queue, 32 running]
Finished OversaturatedHbondAcceptorFilter in 14 seconds [~ 540 test (66.25766871165644%) started, 275 in queue, 31 running]
Running Test swa_rna_gagu_18_rebuild_bulge
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_18_rebuild_bulge/command.sh
Running Test swa_rna_gagu_11_append_and_ccd_close
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_11_append_and_ccd_close/command.sh
Finished MutateResidue_selector in 14 seconds [~ 542 test (66.50306748466258%) started, 273 in queue, 32 running]
Finished LoopLengthChange in 14 seconds [~ 542 test (66.50306748466258%) started, 273 in queue, 31 running]
Running Test set_torsion
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/set_torsion/command.sh
Running Test referencepose_mutateresidue
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/referencepose_mutateresidue/command.sh
Finished FilterReportAsPoseExtraScoresMover in 14 seconds [~ 544 test (66.74846625766871%) started, 271 in queue, 32 running]
Running Test pocket_measure
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_measure/command.sh
Finished HelixBendFilter in 14 seconds [~ 545 test (66.87116564417178%) started, 270 in queue, 32 running]
Running Test phiselector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phiselector/command.sh
Finished FavorSequenceProfileMover in 14 seconds [~ 546 test (66.99386503067484%) started, 269 in queue, 32 running]
Running Test mp_dock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock/command.sh
Finished DumpTrajectoryEnergy in 14 seconds [~ 547 test (67.11656441717791%) started, 268 in queue, 32 running]
Running Test metal_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metal_setup/command.sh
Finished AddConstraintsToCurrentConformationMover in 14 seconds [~ 548 test (67.23926380368098%) started, 267 in queue, 32 running]
Running Test make_and_perturb_bundle_multirepeat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_and_perturb_bundle_multirepeat/command.sh
Finished swm_rna_protonated_adenosine in 14 seconds [~ 549 test (67.36196319018404%) started, 266 in queue, 32 running]
Running Test longest_continuous_polar_segment_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/longest_continuous_polar_segment_filter/command.sh
Finished swa_rna_gagu_23_append_and_kic_close in 14 seconds [~ 550 test (67.48466257668711%) started, 265 in queue, 32 running]
Running Test hbondstoresidue_selector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbondstoresidue_selector/command.sh
Finished swa_rna_gagu_22_prepend_and_kic_close in 14 seconds [~ 551 test (67.60736196319019%) started, 264 in queue, 32 running]
Finished simple_cycpep_predict_terminal_disulfide_internal_permutations in 12 seconds [~ 551 test (67.60736196319019%) started, 264 in queue, 31 running]
Running Test genkic_bin_setting
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_setting/command.sh
Running Test create_clash-based_repack_shell
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/create_clash-based_repack_shell/command.sh
Finished swa_rna_gagu_10_prepend_and_ccd_close in 14 seconds [~ 553 test (67.85276073619632%) started, 262 in queue, 32 running]
Running Test copy_rotamer_mover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/copy_rotamer_mover/command.sh
Finished swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide in 14 seconds [~ 554 test (67.97546012269939%) started, 261 in queue, 32 running]
Finished swa_rna_gagu_13_chunk_combination_and_closure in 14 seconds [~ 554 test (67.97546012269939%) started, 261 in queue, 31 running]
Running Test binselector_probins
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/binselector_probins/command.sh
Running Test binselector
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/binselector/command.sh
Finished stored_residue_subset in 13 seconds [~ 556 test (68.22085889570552%) started, 259 in queue, 32 running]
Running Test backbonegridsampler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler/command.sh
Finished simple_cycpep_predict_sidechain_isopeptide in 13 seconds [~ 557 test (68.34355828220859%) started, 258 in queue, 32 running]
Running Test ModifyVariantTypeMover
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ModifyVariantTypeMover/command.sh
Finished oop_dock_design in 14 seconds [~ 558 test (68.46625766871166%) started, 257 in queue, 32 running]
Running Test tna_base_pairs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/tna_base_pairs/command.sh
Finished mp_symmetry_load in 14 seconds [~ 559 test (68.58895705521472%) started, 256 in queue, 32 running]
Running Test swm_rna_move_inside_helix_by_bond
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_bond/command.sh
Finished mf_fixbb_sc in 14 seconds [~ 560 test (68.71165644171779%) started, 255 in queue, 32 running]
Running Test surface_docking
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/surface_docking/command.sh
Finished genkic_dihedral_copying in 14 seconds [~ 561 test (68.83435582822086%) started, 254 in queue, 32 running]
Running Test rnp_ddg_relax_command_1
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_command_1/command.sh
Finished symmetrical_residue_selector in 13 seconds [~ 562 test (68.95705521472392%) started, 253 in queue, 32 running]
Running Test rna_puzzle6_j67_into_p6p7rigidbody_thread1
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle6_j67_into_p6p7rigidbody_thread1/command.sh
Finished density_refine_symm in 14 seconds [~ 563 test (69.079754601227%) started, 252 in queue, 32 running]
Finished buried_area_filter in 14 seconds [~ 563 test (69.079754601227%) started, 252 in queue, 31 running]
Running Test rna_denovo
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo/command.sh
Running Test helix_from_sequence
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helix_from_sequence/command.sh
Finished design_w_custom_palette-RNA in 14 seconds [~ 565 test (69.32515337423312%) started, 250 in queue, 32 running]
Finished dehydro_aa_patch in 14 seconds [~ 565 test (69.32515337423312%) started, 250 in queue, 31 running]
Finished swm_build_full_model in 13 seconds [~ 565 test (69.32515337423312%) started, 250 in queue, 30 running]
Running Test helical_bundle
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle/command.sh
Running Test genkic_bin_sampling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_sampling/command.sh
Running Test zinc_homodimer_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_homodimer_setup/command.sh
Finished ambiguous_nmr_distance_constraint in 14 seconds [~ 568 test (69.69325153374233%) started, 247 in queue, 32 running]
Finished swa_rna_gagu_18_rebuild_bulge in 12 seconds [~ 568 test (69.69325153374233%) started, 247 in queue, 31 running]
Running Test target_clash
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/target_clash/command.sh
Running Test swa_rna_gagu_12_helix_addition
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_12_helix_addition/command.sh
Finished SSElementSelector in 15 seconds [~ 570 test (69.93865030674847%) started, 245 in queue, 32 running]
Finished swa_rna_gagu_11_append_and_ccd_close in 13 seconds [~ 570 test (69.93865030674847%) started, 245 in queue, 31 running]
Finished set_torsion in 13 seconds [~ 570 test (69.93865030674847%) started, 245 in queue, 30 running]
Running Test simple_cycpep_predict_terminal_disulfide_tails
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.sh
Running Test simple_cycpep_predict_symmetric_sampling
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_symmetric_sampling/command.sh
Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.sh
Finished referencepose_mutateresidue in 13 seconds [~ 573 test (70.30674846625767%) started, 242 in queue, 32 running]
Running Test simple_cycpep_predict_nterm_isopeptide_lariat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.sh
Finished pocket_measure in 13 seconds [~ 574 test (70.42944785276073%) started, 241 in queue, 32 running]
Running Test rna_denovo_new_FT_5P_j12_leadzyme
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_5P_j12_leadzyme/command.sh
Finished phiselector in 13 seconds [~ 575 test (70.5521472392638%) started, 240 in queue, 32 running]
Running Test recces_turner
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/recces_turner/command.sh
Finished mp_dock in 12 seconds [~ 576 test (70.67484662576688%) started, 239 in queue, 32 running]
Running Test mp_mutate_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_mutate_relax/command.sh
Finished swm_add_rosettascripts in 16 seconds [~ 577 test (70.79754601226993%) started, 238 in queue, 32 running]
Running Test mmtfIO_score_test
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mmtfIO_score_test/command.sh
Finished metal_setup in 13 seconds [~ 578 test (70.920245398773%) started, 237 in queue, 32 running]
Running Test database_jd2_io
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_jd2_io/command.sh
Finished make_and_perturb_bundle_multirepeat in 13 seconds [~ 579 test (71.04294478527608%) started, 236 in queue, 32 running]
Running Test database_jd2_compact_io
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_jd2_compact_io/command.sh
Finished longest_continuous_polar_segment_filter in 13 seconds [~ 580 test (71.16564417177914%) started, 235 in queue, 32 running]
Running Test abinitio
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/abinitio/command.sh
Finished hbondstoresidue_selector in 12 seconds [~ 581 test (71.28834355828221%) started, 234 in queue, 32 running]
Running Test swm_rna_nickedhelix
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_nickedhelix/command.sh
Finished genkic_bin_setting in 12 seconds [~ 582 test (71.41104294478528%) started, 233 in queue, 32 running]
Finished simple_cycpep_predict_terminal_disulfide_tails in 7 seconds [~ 582 test (71.41104294478528%) started, 233 in queue, 31 running]
Running Test simple_cycpep_predict_sidechain_isopeptide_reverse
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.sh
Running Test score_jd2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_jd2/command.sh
Finished rnp_ddg_relax_command_1 in 9 seconds [~ 584 test (71.65644171779141%) started, 231 in queue, 32 running]
Running Test mp_range_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_range_relax/command.sh
Finished create_clash-based_repack_shell in 13 seconds [~ 585 test (71.77914110429448%) started, 230 in queue, 32 running]
Running Test molfile_to_params
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/molfile_to_params/command.sh
Finished copy_rotamer_mover in 12 seconds [~ 586 test (71.90184049079754%) started, 229 in queue, 32 running]
Running Test hshash_utils
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hshash_utils/command.sh
Finished backbonegridsampler in 12 seconds [~ 587 test (72.02453987730061%) started, 228 in queue, 32 running]
Running Test glycosylation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycosylation/command.sh
Finished binselector_probins in 13 seconds [~ 588 test (72.14723926380368%) started, 227 in queue, 32 running]
Running Test InterfaceAnalyzer_resfile
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_resfile/command.sh
Finished binselector in 13 seconds [~ 589 test (72.26993865030674%) started, 226 in queue, 32 running]
Running Test InterfaceAnalyzer_bothpack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_bothpack/command.sh
sed: 1: "threadlocal_tracers.txt": undefined label 'hreadlocal_tracers.txt'
Finished ModifyVariantTypeMover in 12 seconds [~ 590 test (72.39263803680981%) started, 225 in queue, 32 running]
Running Test unfolded_state_energy_calc
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/unfolded_state_energy_calc/command.sh
Finished thread_local_tracers_check in 92 seconds [~ 591 test (72.51533742331289%) started, 224 in queue, 32 running]
Finished swm_rna_move_inside_helix_by_bond in 12 seconds [~ 591 test (72.51533742331289%) started, 224 in queue, 31 running]
Running Test stepwise_lores
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/stepwise_lores/command.sh
Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.sh
Finished helix_from_sequence in 11 seconds [~ 593 test (72.76073619631902%) started, 222 in queue, 32 running]
Running Test rna_predict_chem_map
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_predict_chem_map/command.sh
Finished surface_docking in 12 seconds [~ 594 test (72.88343558282209%) started, 221 in queue, 32 running]
Finished zinc_homodimer_setup in 11 seconds [~ 594 test (72.88343558282209%) started, 221 in queue, 31 running]
Running Test rb_recces
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rb_recces/command.sh
Running Test mpi_multistate_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpi_multistate_design/command.sh
Finished rna_denovo in 11 seconds [~ 596 test (73.12883435582822%) started, 219 in queue, 32 running]
Running Test mp_mutate_repack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_mutate_repack/command.sh
Finished rna_puzzle6_j67_into_p6p7rigidbody_thread1 in 12 seconds [~ 597 test (73.25153374233129%) started, 218 in queue, 32 running]
Running Test gen_apo_grids
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/gen_apo_grids/command.sh
Finished swa_rna_gagu_12_helix_addition in 12 seconds [~ 598 test (73.37423312883436%) started, 217 in queue, 32 running]
Finished simple_cycpep_predict_nterm_isopeptide_lariat in 11 seconds [~ 598 test (73.37423312883436%) started, 217 in queue, 31 running]
Running Test fold_and_dock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_and_dock/command.sh
Running Test energy_based_clustering_alpha_aa_scorefile
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_scorefile/command.sh
Finished helical_bundle in 12 seconds [~ 600 test (73.61963190184049%) started, 215 in queue, 32 running]
Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 11 seconds [~ 600 test (73.61963190184049%) started, 215 in queue, 31 running]
Running Test docking_prepack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_prepack/command.sh
Running Test broker_membrane
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/broker_membrane/command.sh
Finished genkic_bin_sampling in 12 seconds [~ 602 test (73.86503067484662%) started, 213 in queue, 32 running]
Finished rna_denovo_new_FT_5P_j12_leadzyme in 10 seconds [~ 602 test (73.86503067484662%) started, 213 in queue, 31 running]
Running Test blob_finder
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/blob_finder/command.sh
Running Test trRosetta_test_predict_ubiquitin_cst_file_write_only
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write_only/command.sh
Finished tna_base_pairs in 14 seconds [~ 604 test (74.11042944785277%) started, 211 in queue, 32 running]
Running Test trRosetta_test_predict_ubiquitin_cst_file_write
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write/command.sh
Finished simple_cycpep_predict_symmetric_sampling in 12 seconds [~ 605 test (74.23312883435582%) started, 210 in queue, 32 running]
Finished mp_mutate_relax in 10 seconds [~ 605 test (74.23312883435582%) started, 210 in queue, 31 running]
No correct command.sh file found for tensorflow_manager. Skipping.
Running Test trRosetta_test_predict_ubiquitin
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin/command.sh
Running Test swm_rna_loop_design
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_loop_design/command.sh
Finished recces_turner in 11 seconds [~ 608 test (74.60122699386503%) started, 207 in queue, 32 running]
Running Test swm_protein_from_scratch
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_from_scratch/command.sh
Finished target_clash in 14 seconds [~ 609 test (74.7239263803681%) started, 206 in queue, 32 running]
Running Test simple_cycpep_predict_cterm_isopeptide_lariat
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.sh
Finished mmtfIO_score_test in 11 seconds [~ 610 test (74.84662576687117%) started, 205 in queue, 32 running]
Running Test rna_puzzle6_U75G76A77_on_thread1
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle6_U75G76A77_on_thread1/command.sh
Finished database_jd2_io in 11 seconds [~ 611 test (74.96932515337423%) started, 204 in queue, 32 running]
Running Test mp_transform_optimize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_transform_optimize/command.sh
Finished glycosylation in 7 seconds [~ 612 test (75.0920245398773%) started, 203 in queue, 32 running]
Running Test assemble_domains_jd2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/assemble_domains_jd2/command.sh
Finished database_jd2_compact_io in 11 seconds [~ 613 test (75.21472392638037%) started, 202 in queue, 32 running]
No correct command.sh file found for tensorflow_simple_model_load_and_evaluate. Skipping.
No correct command.sh file found for tensorflow_connection_test. Skipping.
Running Test InterfaceAnalyzer_prepack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_prepack/command.sh
Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 10 seconds [~ 616 test (75.58282208588957%) started, 199 in queue, 32 running]
Running Test swa_rna_gagu_17_append_floating_base
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_17_append_floating_base/command.sh
Finished mp_range_relax in 10 seconds [~ 617 test (75.70552147239263%) started, 198 in queue, 32 running]
Running Test swa_rna_gagu_03_append_to_silent
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_03_append_to_silent/command.sh
Finished abinitio in 11 seconds [~ 618 test (75.8282208588957%) started, 197 in queue, 32 running]
Finished swm_rna_nickedhelix in 11 seconds [~ 618 test (75.8282208588957%) started, 197 in queue, 31 running]
Running Test simple_cycpep_predict_nmethyl
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nmethyl/command.sh
Running Test rna_motif
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_motif/command.sh
Finished score_jd2 in 10 seconds [~ 620 test (76.07361963190183%) started, 195 in queue, 32 running]
Running Test restype_converter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/restype_converter/command.sh
Finished hshash_utils in 10 seconds [~ 621 test (76.1963190184049%) started, 194 in queue, 32 running]
Finished stepwise_lores in 9 seconds [~ 621 test (76.1963190184049%) started, 194 in queue, 31 running]
Finished rna_predict_chem_map in 9 seconds [~ 621 test (76.1963190184049%) started, 194 in queue, 30 running]
Running Test phosphorylation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phosphorylation/command.sh
Running Test pepspec_anchor_dock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pepspec_anchor_dock/command.sh
Running Test mp_dock_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_setup/command.sh
Finished unfolded_state_energy_calc in 10 seconds [~ 624 test (76.56441717791411%) started, 191 in queue, 32 running]
Running Test ligand_motif_discovery
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_discovery/command.sh
Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 10 seconds [~ 625 test (76.68711656441718%) started, 190 in queue, 32 running]
Finished rb_recces in 9 seconds [~ 625 test (76.68711656441718%) started, 190 in queue, 31 running]
Running Test docking_low_res
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_low_res/command.sh
Running Test InterfaceAnalyzer_tracer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_tracer/command.sh
Finished InterfaceAnalyzer_resfile in 11 seconds [~ 627 test (76.93251533742331%) started, 188 in queue, 32 running]
Finished InterfaceAnalyzer_bothpack in 10 seconds [~ 627 test (76.93251533742331%) started, 188 in queue, 31 running]
Finished energy_based_clustering_alpha_aa_scorefile in 8 seconds [~ 627 test (76.93251533742331%) started, 188 in queue, 30 running]
Running Test InterfaceAnalyzer_allscores
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_allscores/command.sh
Running Test swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/command.sh
Running Test swa_rna_gagu_20_append_floating_base_by_jump
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_20_append_floating_base_by_jump/command.sh
Finished mpi_multistate_design in 10 seconds [~ 630 test (77.30061349693251%) started, 185 in queue, 32 running]
Running Test swa_rna_gagu_08_append_dinucleotide
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_08_append_dinucleotide/command.sh
Finished mp_mutate_repack in 10 seconds [~ 631 test (77.42331288343559%) started, 184 in queue, 32 running]
Finished blob_finder in 8 seconds [~ 631 test (77.42331288343559%) started, 184 in queue, 31 running]
Running Test swa_rna_gagu_07_prepend_dinucleotide
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_07_prepend_dinucleotide/command.sh
Running Test swa_rna_gagu_06_append_to_3primeterminus
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_06_append_to_3primeterminus/command.sh
Finished gen_apo_grids in 10 seconds [~ 633 test (77.66871165644172%) started, 182 in queue, 32 running]
Finished swm_rna_loop_design in 8 seconds [~ 633 test (77.66871165644172%) started, 182 in queue, 31 running]
Running Test swa_rna_gagu_05_prepend_to_5primeterminus
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_05_prepend_to_5primeterminus/command.sh
Running Test swa_rna_gagu_02_prepend
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_02_prepend/command.sh
Finished docking_prepack in 9 seconds [~ 635 test (77.91411042944786%) started, 180 in queue, 32 running]
Running Test swa_rna_gagu_01_append
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_01_append/command.sh
Finished swm_protein_from_scratch in 9 seconds [~ 636 test (78.03680981595092%) started, 179 in queue, 32 running]
Running Test simple_cycpep_predict_terminal_disulfide
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.sh
Finished broker_membrane in 10 seconds [~ 637 test (78.15950920245399%) started, 178 in queue, 32 running]
Running Test simple_cycpep_predict_lanthionine
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.sh
Finished fold_and_dock in 10 seconds [~ 638 test (78.28220858895706%) started, 177 in queue, 32 running]
Running Test rna_puzzle5_p2_GAAA_mini
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle5_p2_GAAA_mini/command.sh
Finished molfile_to_params in 14 seconds [~ 639 test (78.40490797546012%) started, 176 in queue, 32 running]
Running Test rna_denovo_grid_vdw
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_grid_vdw/command.sh
Finished simple_cycpep_predict_cterm_isopeptide_lariat in 9 seconds [~ 640 test (78.52760736196319%) started, 175 in queue, 32 running]
Running Test orbitals
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/orbitals/command.sh
Finished rna_puzzle6_U75G76A77_on_thread1 in 8 seconds [~ 641 test (78.65030674846626%) started, 174 in queue, 32 running]
Running Test metalloprotein_broker
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metalloprotein_broker/command.sh
Finished trRosetta_test_predict_ubiquitin_cst_file_write_only in 11 seconds [~ 642 test (78.77300613496932%) started, 173 in queue, 32 running]
Running Test jscore
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jscore/command.sh
Finished trRosetta_test_predict_ubiquitin_cst_file_write in 11 seconds [~ 643 test (78.8957055214724%) started, 172 in queue, 32 running]
Finished trRosetta_test_predict_ubiquitin in 11 seconds [~ 643 test (78.8957055214724%) started, 172 in queue, 31 running]
Running Test hotspot_stub_constraints
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_stub_constraints/command.sh
Running Test cmaes_minimizer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cmaes_minimizer/command.sh
Finished mp_transform_optimize in 8 seconds [~ 645 test (79.14110429447852%) started, 170 in queue, 32 running]
Running Test SID_rescore
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SID_rescore/command.sh
Finished assemble_domains_jd2 in 9 seconds [~ 646 test (79.2638036809816%) started, 169 in queue, 32 running]
Running Test InterfaceAnalyzer_ligand
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_ligand/command.sh
Finished swa_rna_gagu_17_append_floating_base in 8 seconds [~ 647 test (79.38650306748467%) started, 168 in queue, 32 running]
Running Test swm_rna_move_align_dock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_align_dock/command.sh
Finished restype_converter in 8 seconds [~ 648 test (79.50920245398773%) started, 167 in queue, 32 running]
Running Test swa_rna_gagu_19_prepend_floating_base_by_jump
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_19_prepend_floating_base_by_jump/command.sh
Finished simple_cycpep_predict_nmethyl in 8 seconds [~ 649 test (79.6319018404908%) started, 166 in queue, 32 running]
Finished rna_motif in 8 seconds [~ 649 test (79.6319018404908%) started, 166 in queue, 31 running]
Running Test struc_set_fragment_picker
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/struc_set_fragment_picker/command.sh
Running Test sequence_tolerance
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_tolerance/command.sh
Finished InterfaceAnalyzer_prepack in 10 seconds [~ 651 test (79.87730061349693%) started, 164 in queue, 32 running]
Running Test rna_minimize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_minimize/command.sh
Finished swa_rna_gagu_03_append_to_silent in 9 seconds [~ 652 test (80.0%) started, 163 in queue, 32 running]
Running Test rna_helix
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_helix/command.sh
Finished swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump in 8 seconds [~ 653 test (80.12269938650307%) started, 162 in queue, 32 running]
Finished swa_rna_gagu_20_append_floating_base_by_jump in 8 seconds [~ 653 test (80.12269938650307%) started, 162 in queue, 31 running]
Running Test phosphonate
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phosphonate/command.sh
Running Test output_schema
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/output_schema/command.sh
Finished pepspec_anchor_dock in 8 seconds [~ 655 test (80.3680981595092%) started, 160 in queue, 32 running]
Finished ligand_motif_discovery in 8 seconds [~ 655 test (80.3680981595092%) started, 160 in queue, 31 running]
Running Test ligand_motif_identification
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_identification/command.sh
Running Test identify_cdr_clusters
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/identify_cdr_clusters/command.sh
Finished swa_rna_gagu_08_append_dinucleotide in 8 seconds [~ 657 test (80.61349693251533%) started, 158 in queue, 32 running]
Finished swa_rna_gagu_07_prepend_dinucleotide in 8 seconds [~ 657 test (80.61349693251533%) started, 158 in queue, 31 running]
Running Test energy_based_clustering_alpha_aa_dihedral
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_dihedral/command.sh
Running Test duplicate_header_guards
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/duplicate_header_guards/command.sh
Finished phosphorylation in 9 seconds [~ 659 test (80.85889570552148%) started, 156 in queue, 32 running]
Running Test cartesianddg
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cartesianddg/command.sh
Finished mp_dock_setup in 9 seconds [~ 660 test (80.98159509202453%) started, 155 in queue, 32 running]
Finished swa_rna_gagu_06_append_to_3primeterminus in 8 seconds [~ 660 test (80.98159509202453%) started, 155 in queue, 31 running]
Finished swa_rna_gagu_05_prepend_to_5primeterminus in 8 seconds [~ 660 test (80.98159509202453%) started, 155 in queue, 30 running]
Finished swa_rna_gagu_02_prepend in 8 seconds [~ 660 test (80.98159509202453%) started, 155 in queue, 29 running]
Running Test antibody_numbering_converter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_numbering_converter/command.sh
Running Test ProQ
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ProQ/command.sh
Running Test swm_protein_preminimize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_preminimize/command.sh
Running Test swa_protein_cluster
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_cluster/command.sh
Finished docking_low_res in 9 seconds [~ 664 test (81.47239263803681%) started, 151 in queue, 32 running]
Running Test rna_ribosome_tether
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_ribosome_tether/command.sh
Finished InterfaceAnalyzer_tracer in 9 seconds [~ 665 test (81.59509202453988%) started, 150 in queue, 32 running]
Running Test rna_denovo_bps
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps/command.sh
Finished InterfaceAnalyzer_allscores in 9 seconds [~ 666 test (81.71779141104294%) started, 149 in queue, 32 running]
Finished swa_rna_gagu_01_append in 8 seconds [~ 666 test (81.71779141104294%) started, 149 in queue, 31 running]
Finished simple_cycpep_predict_terminal_disulfide in 8 seconds [~ 666 test (81.71779141104294%) started, 149 in queue, 30 running]
Running Test pymol_cif
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pymol_cif/command.sh
Running Test pwsho
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pwsho/command.sh
Running Test per_residue_energies
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_energies/command.sh
Finished simple_cycpep_predict_lanthionine in 8 seconds [~ 669 test (82.08588957055214%) started, 146 in queue, 32 running]
Finished rna_puzzle5_p2_GAAA_mini in 8 seconds [~ 669 test (82.08588957055214%) started, 146 in queue, 31 running]
Running Test mutate
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mutate/command.sh
Running Test mp_vis_emb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_vis_emb/command.sh
Finished rna_denovo_grid_vdw in 8 seconds [~ 671 test (82.33128834355828%) started, 144 in queue, 32 running]
Running Test mp_interface_statistics
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_interface_statistics/command.sh
Finished orbitals in 8 seconds [~ 672 test (82.45398773006134%) started, 143 in queue, 32 running]
Running Test mg_modeler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mg_modeler/command.sh
Finished jscore in 8 seconds [~ 673 test (82.57668711656441%) started, 142 in queue, 32 running]
Finished hotspot_stub_constraints in 8 seconds [~ 673 test (82.57668711656441%) started, 142 in queue, 31 running]
Finished cmaes_minimizer in 8 seconds [~ 673 test (82.57668711656441%) started, 142 in queue, 30 running]
Running Test jrelax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jrelax/command.sh
Running Test interface_energy
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/interface_energy/command.sh
Running Test ig_dump
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ig_dump/command.sh
Finished metalloprotein_broker in 9 seconds [~ 676 test (82.94478527607362%) started, 139 in queue, 32 running]
Running Test glycan_clash_check
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_clash_check/command.sh
Finished SID_rescore in 8 seconds [~ 677 test (83.06748466257669%) started, 138 in queue, 32 running]
Running Test geometric_solvation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/geometric_solvation/command.sh
Finished InterfaceAnalyzer_ligand in 8 seconds [~ 678 test (83.19018404907976%) started, 137 in queue, 32 running]
Finished swm_rna_move_align_dock in 7 seconds [~ 678 test (83.19018404907976%) started, 137 in queue, 31 running]
Running Test gen_lig_grids
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/gen_lig_grids/command.sh
Running Test fragmentpicker_integration_demo
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fragmentpicker_integration_demo/command.sh
Finished struc_set_fragment_picker in 6 seconds [~ 680 test (83.43558282208589%) started, 135 in queue, 32 running]
Finished rna_helix in 6 seconds [~ 680 test (83.43558282208589%) started, 135 in queue, 31 running]
Running Test extract_atomtree_diffs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/extract_atomtree_diffs/command.sh
Running Test erraser_minimize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/erraser_minimize/command.sh
Finished swa_rna_gagu_19_prepend_floating_base_by_jump in 7 seconds [~ 682 test (83.68098159509202%) started, 133 in queue, 32 running]
Finished sequence_tolerance in 7 seconds [~ 682 test (83.68098159509202%) started, 133 in queue, 31 running]
Finished rna_minimize in 6 seconds [~ 682 test (83.68098159509202%) started, 133 in queue, 30 running]
Running Test energy_based_clustering_alpha_aa_bin_analysis
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_bin_analysis/command.sh
Running Test energy_based_clustering_alpha_aa
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa/command.sh
Running Test docking_local_refine_min
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_local_refine_min/command.sh
Finished ligand_motif_identification in 6 seconds [~ 685 test (84.04907975460122%) started, 130 in queue, 32 running]
Finished swm_protein_preminimize in 6 seconds [~ 685 test (84.04907975460122%) started, 130 in queue, 31 running]
Running Test distances
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/distances/command.sh
Running Test density_tools
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_tools/command.sh
Finished phosphonate in 7 seconds [~ 687 test (84.29447852760737%) started, 128 in queue, 32 running]
Finished rna_ribosome_tether in 6 seconds [~ 687 test (84.29447852760737%) started, 128 in queue, 31 running]
Running Test constel
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/constel/command.sh
Running Test coenzymes
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coenzymes/command.sh
Finished output_schema in 7 seconds [~ 689 test (84.5398773006135%) started, 126 in queue, 32 running]
Running Test cl_complex_rescore
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cl_complex_rescore/command.sh
Finished pymol_cif in 6 seconds [~ 690 test (84.66257668711657%) started, 125 in queue, 32 running]
Running Test c-term_conjugation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/c-term_conjugation/command.sh
Finished identify_cdr_clusters in 7 seconds [~ 691 test (84.78527607361963%) started, 124 in queue, 32 running]
Finished rna_denovo_bps in 6 seconds [~ 691 test (84.78527607361963%) started, 124 in queue, 31 running]
Finished pwsho in 6 seconds [~ 691 test (84.78527607361963%) started, 124 in queue, 30 running]
Running Test DARC_sampling_on_the_fly
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_sampling_on_the_fly/command.sh
Running Test DARC_make_ray_files
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_make_ray_files/command.sh
Running Test swm_rna_move_two_strands
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_two_strands/command.sh
Finished ProQ in 7 seconds [~ 694 test (85.15337423312883%) started, 121 in queue, 32 running]
Running Test sweep_respair_energies
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sweep_respair_energies/command.sh
Finished mutate in 5 seconds [~ 695 test (85.2760736196319%) started, 120 in queue, 32 running]
Running Test swa_rna_loop_sampler
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_loop_sampler/command.sh
Finished cartesianddg in 7 seconds [~ 696 test (85.39877300613497%) started, 119 in queue, 32 running]
Finished mp_vis_emb in 6 seconds [~ 696 test (85.39877300613497%) started, 119 in queue, 31 running]
Running Test site_constraint
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/site_constraint/command.sh
Running Test shobuns
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/shobuns/command.sh
Finished antibody_numbering_converter in 7 seconds [~ 698 test (85.6441717791411%) started, 117 in queue, 32 running]
Finished mp_interface_statistics in 6 seconds [~ 698 test (85.6441717791411%) started, 117 in queue, 31 running]
Finished mg_modeler in 5 seconds [~ 698 test (85.6441717791411%) started, 117 in queue, 30 running]
Running Test rotamer_recovery_compare_two_structures
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_recovery_compare_two_structures/command.sh
Running Test rna_score
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_score/command.sh
Running Test rna_denovo_bps_helix_ends
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps_helix_ends/command.sh
Finished jrelax in 6 seconds [~ 701 test (86.0122699386503%) started, 114 in queue, 32 running]
Finished interface_energy in 6 seconds [~ 701 test (86.0122699386503%) started, 114 in queue, 31 running]
Running Test rna_denovo_bps_fixed_ends
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps_fixed_ends/command.sh
Running Test read_polymeric_components
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/read_polymeric_components/command.sh
Finished glycan_clash_check in 6 seconds [~ 703 test (86.25766871165644%) started, 112 in queue, 32 running]
Running Test pocket_suggest_targets
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_suggest_targets/command.sh
Finished ig_dump in 7 seconds [~ 704 test (86.38036809815951%) started, 111 in queue, 32 running]
Finished geometric_solvation in 6 seconds [~ 704 test (86.38036809815951%) started, 111 in queue, 31 running]
Running Test noe_assignment
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/noe_assignment/command.sh
Running Test mp_transform
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_transform/command.sh
Finished gen_lig_grids in 5 seconds [~ 706 test (86.62576687116564%) started, 109 in queue, 32 running]
Running Test mp_score_jd2
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_score_jd2/command.sh
Finished swa_protein_cluster in 10 seconds [~ 707 test (86.74846625766871%) started, 108 in queue, 32 running]
Finished fragmentpicker_integration_demo in 5 seconds [~ 707 test (86.74846625766871%) started, 108 in queue, 31 running]
Running Test mp_dock_prepack
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_prepack/command.sh
Running Test measure_lcaa_radii
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/measure_lcaa_radii/command.sh
Finished extract_atomtree_diffs in 5 seconds [~ 709 test (86.99386503067484%) started, 106 in queue, 32 running]
Running Test fragment_picker
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fragment_picker/command.sh
egrep: full_minimize_temp_1.out: No such file or directory
Finished erraser_minimize in 6 seconds [~ 710 test (87.11656441717791%) started, 105 in queue, 32 running]
Running Test fix_alignment_to_match_pdb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fix_alignment_to_match_pdb/command.sh
Finished docking_local_refine_min in 6 seconds [~ 711 test (87.23926380368098%) started, 104 in queue, 32 running]
Running Test cs_rosetta_rna
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cs_rosetta_rna/command.sh
Finished energy_based_clustering_alpha_aa_bin_analysis in 6 seconds [~ 712 test (87.36196319018404%) started, 103 in queue, 32 running]
Finished swm_rna_move_two_strands in 5 seconds [~ 712 test (87.36196319018404%) started, 103 in queue, 31 running]
Running Test cluster
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster/command.sh
Finished distances in 5 seconds [~ 714 test (87.60736196319019%) started, 101 in queue, 32 running]
Running Test buried_unsat_kinemage
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_kinemage/command.sh
Running Test trRosettaProtocolMover_rosettascripts_diskwrite_only
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite_only/command.sh
Finished energy_based_clustering_alpha_aa in 6 seconds [~ 715 test (87.73006134969326%) started, 100 in queue, 32 running]
Running Test trRosettaProtocolMover_rosettascripts_diskwrite
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite/command.sh
Finished c-term_conjugation in 5 seconds [~ 716 test (87.85276073619632%) started, 99 in queue, 32 running]
Running Test trRosettaProtocolMover_rosettascripts
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts/command.sh
Finished constel in 6 seconds [~ 717 test (87.97546012269939%) started, 98 in queue, 32 running]
Running Test rna_denovo_new_FT_rna_two_chains
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_rna_two_chains/command.sh
Finished site_constraint in 5 seconds [~ 718 test (88.09815950920246%) started, 97 in queue, 32 running]
Running Test pH_mode
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pH_mode/command.sh
Finished density_tools in 7 seconds [~ 719 test (88.22085889570552%) started, 96 in queue, 32 running]
Finished cl_complex_rescore in 6 seconds [~ 719 test (88.22085889570552%) started, 96 in queue, 31 running]
Finished swa_rna_loop_sampler in 5 seconds [~ 719 test (88.22085889570552%) started, 96 in queue, 30 running]
Finished shobuns in 5 seconds [~ 719 test (88.22085889570552%) started, 96 in queue, 29 running]
Finished rna_score in 5 seconds [~ 719 test (88.22085889570552%) started, 96 in queue, 28 running]
Running Test mpil_find_pore_bbarrel
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_find_pore_bbarrel/command.sh
Running Test mp_loadtime
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_loadtime/command.sh
Running Test mg_modeler_lores
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mg_modeler_lores/command.sh
Running Test match_1c2t
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_1c2t/command.sh
Running Test make_mainchain_potential_symm_preproline
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential_symm_preproline/command.sh
Finished coenzymes in 7 seconds [~ 724 test (88.83435582822086%) started, 91 in queue, 32 running]
Finished rna_denovo_bps_helix_ends in 5 seconds [~ 724 test (88.83435582822086%) started, 91 in queue, 31 running]
Running Test make_mainchain_potential_symm
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential_symm/command.sh
Running Test make_exemplar
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_exemplar/command.sh
Finished rotamer_recovery_compare_two_structures in 5 seconds [~ 726 test (89.079754601227%) started, 89 in queue, 32 running]
Running Test features_database_schema
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_database_schema/command.sh
Finished DARC_sampling_on_the_fly in 7 seconds [~ 727 test (89.20245398773007%) started, 88 in queue, 32 running]
Finished DARC_make_ray_files in 7 seconds [~ 727 test (89.20245398773007%) started, 88 in queue, 31 running]
Finished read_polymeric_components in 4 seconds [~ 727 test (89.20245398773007%) started, 88 in queue, 30 running]
Running Test drrafter_setup_ribosome_test
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_ribosome_test/command.sh
Running Test drrafter_setup_real_test_H_no_init
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_real_test_H_no_init/command.sh
Running Test drrafter_setup_real_test_H
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_real_test_H/command.sh
Finished rna_denovo_bps_fixed_ends in 5 seconds [~ 730 test (89.57055214723927%) started, 85 in queue, 32 running]
Running Test contactMap
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/contactMap/command.sh
Finished mp_transform in 4 seconds [~ 731 test (89.69325153374233%) started, 84 in queue, 32 running]
Running Test cluster_filter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_filter/command.sh
Finished sweep_respair_energies in 7 seconds [~ 732 test (89.8159509202454%) started, 83 in queue, 32 running]
Running Test ResidueDisorder
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ResidueDisorder/command.sh
Finished pocket_suggest_targets in 5 seconds [~ 733 test (89.93865030674847%) started, 82 in queue, 32 running]
Running Test RescorePDDF
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RescorePDDF/command.sh
Finished noe_assignment in 5 seconds [~ 734 test (90.06134969325153%) started, 81 in queue, 32 running]
Finished mp_score_jd2 in 5 seconds [~ 734 test (90.06134969325153%) started, 81 in queue, 31 running]
Finished mp_dock_prepack in 5 seconds [~ 734 test (90.06134969325153%) started, 81 in queue, 30 running]
Running Test template_features
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/template_features/command.sh
Running Test super_aln
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/super_aln/command.sh
Running Test silent2frag
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/silent2frag/command.sh
Finished measure_lcaa_radii in 5 seconds [~ 737 test (90.42944785276073%) started, 78 in queue, 32 running]
Finished fragment_picker in 5 seconds [~ 737 test (90.42944785276073%) started, 78 in queue, 31 running]
Running Test rna_screen_phosphates
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_screen_phosphates/command.sh
Running Test rings
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rings/command.sh
Finished trRosettaProtocolMover_rosettascripts_diskwrite_only in 4 seconds [~ 739 test (90.67484662576688%) started, 76 in queue, 32 running]
Running Test nucleobase_sample_around
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/nucleobase_sample_around/command.sh
Finished fix_alignment_to_match_pdb in 5 seconds [~ 740 test (90.79754601226993%) started, 75 in queue, 32 running]
Finished cs_rosetta_rna in 5 seconds [~ 740 test (90.79754601226993%) started, 75 in queue, 31 running]
Finished mpil_find_pore_bbarrel in 3 seconds [~ 740 test (90.79754601226993%) started, 75 in queue, 30 running]
Running Test non-canonical_connectivities
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/non-canonical_connectivities/command.sh
Running Test motif_extraction
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_extraction/command.sh
Running Test ld_converter
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ld_converter/command.sh
Finished trRosettaProtocolMover_rosettascripts_diskwrite in 5 seconds [~ 743 test (91.16564417177914%) started, 72 in queue, 32 running]
Running Test code_template_tests_citations
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_citations/command.sh
Finished per_residue_energies in 16 seconds [~ 744 test (91.28834355828221%) started, 71 in queue, 32 running]
Finished trRosettaProtocolMover_rosettascripts in 5 seconds [~ 744 test (91.28834355828221%) started, 71 in queue, 31 running]
Finished pH_mode in 4 seconds [~ 744 test (91.28834355828221%) started, 71 in queue, 30 running]
Running Test centroid_disulfide_scores
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/centroid_disulfide_scores/command.sh
Running Test test_idealize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_idealize/command.sh
Running Test test_d_l_readin
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_d_l_readin/command.sh
Finished energy_based_clustering_alpha_aa_dihedral in 18 seconds [~ 747 test (91.65644171779141%) started, 68 in queue, 32 running]
Finished buried_unsat_kinemage in 5 seconds [~ 747 test (91.65644171779141%) started, 68 in queue, 31 running]
Finished make_mainchain_potential_symm_preproline in 4 seconds [~ 747 test (91.65644171779141%) started, 68 in queue, 30 running]
Running Test select_best_unique_ligand_poses
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/select_best_unique_ligand_poses/command.sh
Running Test rosetta_scripts_info
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_info/command.sh
Running Test rna_minimize_6D_loop_close
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_minimize_6D_loop_close/command.sh
Finished mg_modeler_lores in 4 seconds [~ 750 test (92.02453987730061%) started, 65 in queue, 32 running]
Finished make_mainchain_potential_symm in 4 seconds [~ 750 test (92.02453987730061%) started, 65 in queue, 31 running]
Running Test r_pdb2top
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/r_pdb2top/command.sh
Running Test per_residue_sc_sasa
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_sc_sasa/command.sh
Finished cluster in 6 seconds [~ 752 test (92.26993865030674%) started, 63 in queue, 32 running]
Finished rna_denovo_new_FT_rna_two_chains in 5 seconds [~ 752 test (92.26993865030674%) started, 63 in queue, 31 running]
Finished mp_loadtime in 4 seconds [~ 752 test (92.26993865030674%) started, 63 in queue, 30 running]
Running Test oop_create
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_create/command.sh
Running Test mpil_load_implicit_lipids
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_load_implicit_lipids/command.sh
Running Test mpil_find_pore_ahelical
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_find_pore_ahelical/command.sh
Finished match_1c2t in 5 seconds [~ 755 test (92.63803680981596%) started, 60 in queue, 32 running]
Running Test minimize_6Dloopclose
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/minimize_6Dloopclose/command.sh
Finished contactMap in 4 seconds [~ 756 test (92.76073619631902%) started, 59 in queue, 32 running]
Running Test fit_helixparams_rms
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams_rms/command.sh
Finished drrafter_setup_ribosome_test in 5 seconds [~ 757 test (92.88343558282209%) started, 58 in queue, 32 running]
Finished drrafter_setup_real_test_H_no_init in 5 seconds [~ 757 test (92.88343558282209%) started, 58 in queue, 31 running]
Finished drrafter_setup_real_test_H in 5 seconds [~ 757 test (92.88343558282209%) started, 58 in queue, 30 running]
Running Test drrafter_error_estimation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_error_estimation/command.sh
Running Test cstfile_to_theozyme_pdb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cstfile_to_theozyme_pdb/command.sh
Running Test code_template_tests_src
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_src/command.sh
Finished template_features in 3 seconds [~ 760 test (93.25153374233129%) started, 55 in queue, 32 running]
Running Test angle_recovery_stats
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/angle_recovery_stats/command.sh
Finished cluster_filter in 4 seconds [~ 761 test (93.37423312883436%) started, 54 in queue, 32 running]
Finished super_aln in 3 seconds [~ 761 test (93.37423312883436%) started, 54 in queue, 31 running]
Running Test N-terminal_acetylation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/N-terminal_acetylation/command.sh
Running Test DNA_methylation
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DNA_methylation/command.sh
Finished ResidueDisorder in 4 seconds [~ 763 test (93.61963190184049%) started, 52 in queue, 32 running]
Running Test DARC_shapeonly
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_shapeonly/command.sh
Finished silent2frag in 4 seconds [~ 764 test (93.74233128834356%) started, 51 in queue, 32 running]
Running Test DARC_electrostatics
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_electrostatics/command.sh
Finished RescorePDDF in 4 seconds [~ 765 test (93.86503067484662%) started, 50 in queue, 32 running]
Finished rna_screen_phosphates in 3 seconds [~ 765 test (93.86503067484662%) started, 50 in queue, 31 running]
Finished rings in 3 seconds [~ 765 test (93.86503067484662%) started, 50 in queue, 30 running]
Finished test_d_l_readin in 2 seconds [~ 765 test (93.86503067484662%) started, 50 in queue, 29 running]
Running Test CCS_PARCS
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/CCS_PARCS/command.sh
Running Test CCD_loop_closure
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/CCD_loop_closure/command.sh
Running Test swa_rna_loop_clusterer
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_loop_clusterer/command.sh
Running Test swa_rna_gagu_14_combine_long_loop_filtering
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_14_combine_long_loop_filtering/command.sh
Finished ld_converter in 3 seconds [~ 769 test (94.3558282208589%) started, 46 in queue, 32 running]
Running Test swa_rna_gagu_04_clustering
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_04_clustering/command.sh
Finished motif_extraction in 3 seconds [~ 770 test (94.47852760736197%) started, 45 in queue, 32 running]
Finished test_idealize in 3 seconds [~ 770 test (94.47852760736197%) started, 45 in queue, 31 running]
Finished rna_minimize_6D_loop_close in 3 seconds [~ 770 test (94.47852760736197%) started, 45 in queue, 30 running]
Running Test rna_suitename
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_suitename/command.sh
Running Test rna_cluster
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_cluster/command.sh
Running Test rna_add_WC_stats
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_add_WC_stats/command.sh
Finished make_exemplar in 7 seconds [~ 773 test (94.84662576687117%) started, 42 in queue, 32 running]
Finished select_best_unique_ligand_poses in 3 seconds [~ 773 test (94.84662576687117%) started, 42 in queue, 31 running]
Finished r_pdb2top in 3 seconds [~ 773 test (94.84662576687117%) started, 42 in queue, 30 running]
Finished per_residue_sc_sasa in 3 seconds [~ 773 test (94.84662576687117%) started, 42 in queue, 29 running]
Running Test report_hbonds_for_plugin
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/report_hbonds_for_plugin/command.sh
Running Test ralford_dump_rotamers
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ralford_dump_rotamers/command.sh
Running Test r_rmsf
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/r_rmsf/command.sh
Running Test number_of_residuetypes
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/number_of_residuetypes/command.sh
Finished mpil_load_implicit_lipids in 3 seconds [~ 777 test (95.33742331288343%) started, 38 in queue, 32 running]
Finished mpil_find_pore_ahelical in 3 seconds [~ 777 test (95.33742331288343%) started, 38 in queue, 31 running]
Running Test loop_hash
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_hash/command.sh
Running Test include_cc_check
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/include_cc_check/command.sh
Finished centroid_disulfide_scores in 3 seconds [~ 779 test (95.58282208588957%) started, 36 in queue, 32 running]
Finished oop_create in 3 seconds [~ 779 test (95.58282208588957%) started, 36 in queue, 31 running]
Running Test fit_helixparams_a3b
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams_a3b/command.sh
Running Test calculate_sasa
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/calculate_sasa/command.sh
Finished minimize_6Dloopclose in 3 seconds [~ 781 test (95.8282208588957%) started, 34 in queue, 32 running]
Running Test test_energy_method_options
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_energy_method_options/command.sh
Finished nucleobase_sample_around in 5 seconds [~ 782 test (95.95092024539878%) started, 33 in queue, 32 running]
Running Test per_residue_solvent_exposure
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_solvent_exposure/command.sh
Finished drrafter_error_estimation in 2 seconds [~ 783 test (96.07361963190183%) started, 32 in queue, 32 running]
Finished N-terminal_acetylation in 2 seconds [~ 783 test (96.07361963190183%) started, 32 in queue, 31 running]
Running Test mp_span_from_pdb
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_span_from_pdb/command.sh
Running Test hierarchical_clustering
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hierarchical_clustering/command.sh
Finished fit_helixparams_rms in 3 seconds [~ 785 test (96.31901840490798%) started, 30 in queue, 32 running]
Running Test fit_helixparams
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams/command.sh
Finished rosetta_scripts_info in 4 seconds [~ 786 test (96.44171779141104%) started, 29 in queue, 32 running]
Finished cstfile_to_theozyme_pdb in 3 seconds [~ 786 test (96.44171779141104%) started, 29 in queue, 31 running]
Finished DARC_shapeonly in 2 seconds [~ 786 test (96.44171779141104%) started, 29 in queue, 30 running]
Finished DARC_electrostatics in 2 seconds [~ 786 test (96.44171779141104%) started, 29 in queue, 29 running]
Finished CCS_PARCS in 2 seconds [~ 786 test (96.44171779141104%) started, 29 in queue, 28 running]
Running Test discontinuous_sewing_hasher
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/discontinuous_sewing_hasher/command.sh
Running Test combine_silent
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/combine_silent/command.sh
No correct command.sh file found for basic_gcn_tensorflow_test. Skipping.
Running Test burial_measure_centroid
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/burial_measure_centroid/command.sh
Running Test BuildPeptide
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/BuildPeptide/command.sh
Running Test trRosettaConstraintGenerator_rosettascripts
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaConstraintGenerator_rosettascripts/command.sh
Finished non-canonical_connectivities in 6 seconds [~ 792 test (97.17791411042944%) started, 23 in queue, 32 running]
Finished number_of_residuetypes in 2 seconds [~ 792 test (97.17791411042944%) started, 23 in queue, 31 running]
Finished test_energy_method_options in 2 seconds [~ 792 test (97.17791411042944%) started, 23 in queue, 30 running]
Running Test score_aln
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_aln/command.sh
Running Test header_using_check
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/header_using_check/command.sh
Running Test extract_pdbs
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/extract_pdbs/command.sh
Finished swa_rna_gagu_14_combine_long_loop_filtering in 3 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 32 running]
Finished rna_suitename in 3 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 31 running]
Finished rna_cluster in 3 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 30 running]
Finished rna_add_WC_stats in 3 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 29 running]
Finished r_rmsf in 2 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 28 running]
Finished loop_hash in 2 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 27 running]
Finished fit_helixparams_a3b in 2 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 26 running]
Finished calculate_sasa in 2 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 25 running]
Finished per_residue_solvent_exposure in 2 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 24 running]
Finished mp_span_from_pdb in 1 seconds [~ 795 test (97.54601226993866%) started, 20 in queue, 23 running]
Running Test crossaln
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crossaln/command.sh
Running Test continuous_sewing_hasher
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/continuous_sewing_hasher/command.sh
Running Test rnp_ddg_relax_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_setup/command.sh
Running Test rnp_ddg_relax_finalize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_finalize/command.sh
Running Test rnp_ddg_finalize
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_finalize/command.sh
Running Test rnp_ddg_calc_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_setup/command.sh
Running Test mp_quick_relax
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_quick_relax/command.sh
Running Test features_scientific_benchmark
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_scientific_benchmark/command.sh
Running Test features_postgres
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_postgres/command.sh
Running Test drrafter_setup_simple
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_simple/command.sh
database/citations/rosetta_citations.txt -> database/citations/rosetta_citations.original.txt
First script ran successfully.
Second script ran successfully.
Output matches expectation.
PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python
Finished code_template_tests_citations in 6 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 32 running]
Finished angle_recovery_stats in 4 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 31 running]
Finished DNA_methylation in 4 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 30 running]
Finished report_hbonds_for_plugin in 3 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 29 running]
Finished ralford_dump_rotamers in 3 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 28 running]
Finished fit_helixparams in 1 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 27 running]
Finished mp_quick_relax in 0 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 26 running]
Finished features_scientific_benchmark in 0 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 25 running]
Finished features_postgres in 0 seconds [~ 805 test (98.77300613496932%) started, 10 in queue, 24 running]
Running Test drrafter_setup_protein_dock
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_protein_dock/command.sh
Running Test drrafter_setup_build_missing
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_build_missing/command.sh
Running Test drrafter_setup
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup/command.sh
Running Test code_template_tests_unit
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_unit/command.sh
Running Test code_template_tests_app
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_app/command.sh
Running Test cluster_calibur
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_calibur/command.sh
Running Test central_class_modification
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/central_class_modification/command.sh
Running Test case_sensitive_filenames
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/case_sensitive_filenames/command.sh
PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python
Running Test Werror_check
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/Werror_check/command.sh
Calibur clustering has been broken since its inception.
The external version was never successfully integration tested because
of typos in the integration test. The version ported to Rosetta has never
worked either.
Since now it causes hard-failures on release_debug, it needs to be
deactivated for now.
Finished CCD_loop_closure in 4 seconds [~ 814 test (99.87730061349693%) started, 1 in queue, 32 running]
Finished swa_rna_loop_clusterer in 4 seconds [~ 814 test (99.87730061349693%) started, 1 in queue, 31 running]
Finished swa_rna_gagu_04_clustering in 3 seconds [~ 814 test (99.87730061349693%) started, 1 in queue, 30 running]
Finished rnp_ddg_relax_setup in 0 seconds [~ 814 test (99.87730061349693%) started, 1 in queue, 29 running]
Finished rnp_ddg_relax_finalize in 0 seconds [~ 814 test (99.87730061349693%) started, 1 in queue, 28 running]
Finished cluster_calibur in 0 seconds [~ 814 test (99.87730061349693%) started, 1 in queue, 27 running]
Finished central_class_modification in 0 seconds [~ 814 test (99.87730061349693%) started, 1 in queue, 26 running]
Running Test RescoreSAXS
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RescoreSAXS/command.sh
Finished drrafter_setup_simple in 0 seconds [~ 815 test (100.0%) started, 0 in queue, 26 running]
Running Test HOW_TO_MAKE_TESTS
ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HOW_TO_MAKE_TESTS/command.sh
Finished RescoreSAXS in 0 seconds [~ 815 test (100.0%) started, 0 in queue, 25 running]
PYTHON is /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python
PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python
sed: 1: "cc_includes.txt": command c expects \ followed by text
Finished hierarchical_clustering in 2 seconds [~ 815 test (100.0%) started, 0 in queue, 24 running]
Finished discontinuous_sewing_hasher in 2 seconds [~ 815 test (100.0%) started, 0 in queue, 23 running]
Finished burial_measure_centroid in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 22 running]
Finished trRosettaConstraintGenerator_rosettascripts in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 21 running]
Finished score_aln in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 20 running]
Finished extract_pdbs in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 19 running]
Finished continuous_sewing_hasher in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 18 running]
Finished rnp_ddg_finalize in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 17 running]
Finished rnp_ddg_calc_setup in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 16 running]
Finished drrafter_setup in 0 seconds [~ 815 test (100.0%) started, 0 in queue, 15 running]
Finished code_template_tests_unit in 0 seconds [~ 815 test (100.0%) started, 0 in queue, 14 running]
Finished HOW_TO_MAKE_TESTS in 0 seconds [~ 815 test (100.0%) started, 0 in queue, 13 running]
Finished include_cc_check in 3 seconds [~ 815 test (100.0%) started, 0 in queue, 12 running]
Finished header_using_check in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 11 running]
Finished drrafter_setup_protein_dock in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 10 running]
Finished drrafter_setup_build_missing in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 9 running]
test_general
test_abstract
test_mover
test_ws_energy_method
test_1b_energy_method
test_2b_energy_method
test_task_operation
test_features_reporter
test_residue_selector
test_residue_selector_in_core
test_crosslinker_mover_helper
test_util
Finished code_template_tests_src in 6 seconds [~ 815 test (100.0%) started, 0 in queue, 8 running]
Finished crossaln in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 7 running]
Finished code_template_tests_app in 1 seconds [~ 815 test (100.0%) started, 0 in queue, 6 running]
Finished features_database_schema in 12 seconds [~ 815 test (100.0%) started, 0 in queue, 5 running]
Finished combine_silent in 2 seconds [~ 815 test (100.0%) started, 0 in queue, 4 running]
Finished BuildPeptide in 2 seconds [~ 815 test (100.0%) started, 0 in queue, 3 running]
Checking the status of the -Werror option in the Scons build settings:
PASS
Checking the status of the -Werror option in the CMake build settings:
PASS
Finished Werror_check in 2 seconds [~ 815 test (100.0%) started, 0 in queue, 2 running]
/usr/bin/git
a7b0eeecf9acff9497af62e110c1c8e6a957276d
Finished case_sensitive_filenames in 6 seconds [~ 815 test (100.0%) started, 0 in queue, 1 running]
Finished duplicate_header_guards in 45 seconds [~ 815 test (100.0%) started, 0 in queue, 0 running]
Skipping comparison/analysis phase because command line option "--skip-comparison" was specified...
Missing new/runtimes.yaml
──────────────── 'takeshi' comparing main:62156 mac.clang.python39.integration test_id=857679 vs. main:62155 previous_test_id=857099 ────────────────
{
"compared_with_test": {
"full_name": "mac.clang.python39.integration",
"name": "integration",
"platform": {
"compiler": "clang",
"extras": [],
"os": "mac",
"python": "3.9"
},
"platform_as_string": "mac.clang.python39",
"revision": {
"branch": "main",
"revision_id": 62155
},
"state": "failed",
"test_id": 857099
},
"summary": {
"failed": 2,
"failed_tests": [
"revold",
"mp_f19_relax"
],
"total": 815
},
"tests": {
"AddConstraintsToCurrentConformationMover": {
"log": "",
"state": "passed"
},
"AlignPDBInfoToSequences": {
"log": "",
"state": "passed"
},
"AlterSpecDisruption": {
"log": "",
"state": "passed"
},
"AnchorFinder": {
"log": "",
"state": "passed"
},
"AnchoredDesign": {
"log": "",
"state": "passed"
},
"AnchoredPDBCreator": {
"log": "",
"state": "passed"
},
"BFactorSelector": {
"log": "",
"state": "passed"
},
"BuildPeptide": {
"log": "",
"state": "passed"
},
"CCD_loop_closure": {
"log": "",
"state": "passed"
},
"CCS_PARCS": {
"log": "",
"state": "passed"
},
"ConsensusLoopDesign": {
"log": "",
"state": "passed"
},
"ContactMolecularSurface": {
"log": "",
"state": "passed"
},
"DARC_electrostatics": {
"log": "",
"state": "passed"
},
"DARC_make_ray_files": {
"log": "",
"state": "passed"
},
"DARC_sampling_on_the_fly": {
"log": "",
"state": "passed"
},
"DARC_shapeonly": {
"log": "",
"state": "passed"
},
"DNA_methylation": {
"log": "",
"state": "passed"
},
"DumpTrajectoryEnergy": {
"log": "",
"state": "passed"
},
"DumpTrajectoryEnergy_packing": {
"log": "",
"state": "passed"
},
"Enzrevert_xml": {
"log": "",
"state": "passed"
},
"FavorSequenceProfileMover": {
"log": "",
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},
"FilterReportAsPoseExtraScoresMover": {
"log": "",
"state": "passed"
},
"FlipChirality": {
"log": "",
"state": "passed"
},
"FloppyTail": {
"log": "",
"state": "passed"
},
"HDXEnergy": {
"log": "",
"state": "passed"
},
"HOW_TO_MAKE_TESTS": {
"log": "",
"state": "passed"
},
"HelixBendFilter": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_allscores": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_bothpack": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_ligand": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_metrics": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_prepack": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_resfile": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_tracer": {
"log": "",
"state": "passed"
},
"InterfaceDdG": {
"log": "",
"state": "passed"
},
"KIC_refine": {
"log": "",
"state": "passed"
},
"KIC_vicinity": {
"log": "",
"state": "passed"
},
"KIC_with_fragments": {
"log": "",
"state": "passed"
},
"LayerDesign": {
"log": "",
"state": "passed"
},
"LayerDesign_symm": {
"log": "",
"state": "passed"
},
"LayerSelector": {
"log": "",
"state": "passed"
},
"LoopAnalyzer": {
"log": "",
"state": "passed"
},
"LoopLengthChange": {
"log": "",
"state": "passed"
},
"ModifyVariantTypeMover": {
"log": "",
"state": "passed"
},
"MutateResidue_selector": {
"log": "",
"state": "passed"
},
"N-terminal_acetylation": {
"log": "",
"state": "passed"
},
"OversaturatedHbondAcceptorFilter": {
"log": "",
"state": "passed"
},
"PDB_diagnostic": {
"log": "",
"state": "passed"
},
"PTMPrediction": {
"log": "",
"state": "passed"
},
"PeptideCyclizeMover": {
"log": "",
"state": "passed"
},
"PeptideStubMover_prependRepeat": {
"log": "",
"state": "passed"
},
"PolarDesign2019": {
"log": "",
"state": "passed"
},
"ProQ": {
"log": "",
"state": "passed"
},
"RBOut": {
"log": "",
"state": "passed"
},
"ReadResfile_with_selector": {
"log": "",
"state": "passed"
},
"RescorePDDF": {
"log": "",
"state": "passed"
},
"RescoreSAXS": {
"log": "",
"state": "passed"
},
"ResidueDisorder": {
"log": "",
"state": "passed"
},
"RunSimpleMetric_b_factor_test": {
"log": "",
"state": "passed"
},
"SID_ERMS_prediction": {
"log": "",
"state": "passed"
},
"SID_rescore": {
"log": "",
"state": "passed"
},
"SSElementSelector": {
"log": "",
"state": "passed"
},
"SecondaryStructureFilter": {
"log": "",
"state": "passed"
},
"SnugDock": {
"log": "",
"state": "passed"
},
"StrandCurvatureByLevels": {
"log": "",
"state": "passed"
},
"StrandHelixGeometryFilter": {
"log": "",
"state": "passed"
},
"ThreadingInputter": {
"log": "",
"state": "passed"
},
"TryDisulfPermutations": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester_extra_bodies": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester_two_ubiquitins": {
"log": "",
"state": "passed"
},
"UBQ_Gp_CYD-CYD": {
"log": "",
"state": "passed"
},
"UBQ_Gp_LYX-Cterm": {
"log": "",
"state": "passed"
},
"UnsatSelector": {
"log": "",
"state": "passed"
},
"Werror_check": {
"log": "",
"state": "passed"
},
"abinitio": {
"log": "",
"state": "passed"
},
"abinitio_with_trRosetta": {
"log": "",
"state": "passed"
},
"add_constraints_to_current_conformation": {
"log": "",
"state": "passed"
},
"add_helix_sequence_constraints": {
"log": "",
"state": "passed"
},
"add_helix_sequence_constraints_advanced_setup": {
"log": "",
"state": "passed"
},
"add_job_pair_data": {
"log": "",
"state": "passed"
},
"ambiguous_nmr_distance_constraint": {
"log": "",
"state": "passed"
},
"angle_recovery_stats": {
"log": "",
"state": "passed"
},
"antibody_H3": {
"log": "",
"state": "passed"
},
"antibody_H3_camelid": {
"log": "",
"state": "passed"
},
"antibody_cc": {
"log": "",
"state": "passed"
},
"antibody_designer": {
"log": "",
"state": "passed"
},
"antibody_designer_camelid": {
"log": "",
"state": "passed"
},
"antibody_designer_xml": {
"log": "",
"state": "passed"
},
"antibody_graft": {
"log": "",
"state": "passed"
},
"antibody_numbering_converter": {
"log": "",
"state": "passed"
},
"app_exception_handling": {
"log": "",
"state": "passed"
},
"assemble_domains_jd2": {
"log": "",
"state": "passed"
},
"auto-drrafter_final_results": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R1": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R2": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R3": {
"log": "",
"state": "passed"
},
"autoNOE_rosetta": {
"log": "",
"state": "passed"
},
"autosetup_metals_centroid": {
"log": "",
"state": "passed"
},
"backbonegridsampler": {
"log": "",
"state": "passed"
},
"backbonegridsampler_multiresidue": {
"log": "",
"state": "passed"
},
"backbonegridsampler_nstruct_mode": {
"log": "",
"state": "passed"
},
"backrub": {
"log": "",
"state": "passed"
},
"backrub_interface_ddG": {
"log": "",
"state": "passed"
},
"backrub_pilot": {
"log": "",
"state": "passed"
},
"balancedKIC": {
"log": "",
"state": "passed"
},
"basic_gcn_tensorflow_test": {
"log": "",
"state": "passed"
},
"batch_relax": {
"log": "",
"state": "passed"
},
"bcl_fragment_mutate": {
"log": "",
"state": "passed"
},
"beta_strand_homodimer": {
"log": "",
"state": "passed"
},
"bin_initialization": {
"log": "",
"state": "passed"
},
"bin_perturbation": {
"log": "",
"state": "passed"
},
"binselector": {
"log": "",
"state": "passed"
},
"binselector_probins": {
"log": "",
"state": "passed"
},
"blob_finder": {
"log": "",
"state": "passed"
},
"bridge_chains": {
"log": "",
"state": "passed"
},
"broker": {
"log": "",
"state": "passed"
},
"broker_membrane": {
"log": "",
"state": "passed"
},
"bundlegridsampler": {
"log": "",
"state": "passed"
},
"bundlegridsampler_composition_energy": {
"log": "",
"state": "passed"
},
"bundlegridsampler_composition_energy_fract_range": {
"log": "",
"state": "passed"
},
"bundlegridsampler_copy_pitch": {
"log": "",
"state": "passed"
},
"bundlegridsampler_design": {
"log": "",
"state": "passed"
},
"bundlegridsampler_design_nstruct_mode": {
"log": "",
"state": "passed"
},
"bundlegridsampler_epsilon": {
"log": "",
"state": "passed"
},
"bundlegridsampler_multirepeat": {
"log": "",
"state": "passed"
},
"bundlegridsampler_z0_offset": {
"log": "",
"state": "passed"
},
"bundlegridsampler_z1_offset": {
"log": "",
"state": "passed"
},
"bundlereporter_filter": {
"log": "",
"state": "passed"
},
"burial_measure_centroid": {
"log": "",
"state": "passed"
},
"buried_area_filter": {
"log": "",
"state": "passed"
},
"buried_unsat_kinemage": {
"log": "",
"state": "passed"
},
"buried_unsat_voids_hbnet_design": {
"log": "",
"state": "passed"
},
"buried_unsat_voids_hbnet_design_symm": {
"log": "",
"state": "passed"
},
"c-term_conjugation": {
"log": "",
"state": "passed"
},
"calculate_sasa": {
"log": "",
"state": "passed"
},
"carbohydrates": {
"log": "",
"state": "passed"
},
"cart_min_glycans": {
"log": "",
"state": "passed"
},
"cartesianddg": {
"log": "",
"state": "passed"
},
"case_sensitive_filenames": {
"log": "",
"state": "passed"
},
"ccd_ends_graft_mover_rs": {
"log": "",
"state": "passed"
},
"central_class_modification": {
"log": "",
"state": "passed"
},
"centroid_disulfide_scores": {
"log": "",
"state": "passed"
},
"centroid_from_fullatom": {
"log": "",
"state": "passed"
},
"cl_complex_rescore": {
"log": "",
"state": "passed"
},
"classic_relax_1a19": {
"log": "",
"state": "passed"
},
"cleanAlignment": {
"log": "",
"state": "passed"
},
"cluster": {
"log": "",
"state": "passed"
},
"cluster_alns": {
"log": "",
"state": "passed"
},
"cluster_calibur": {
"log": "",
"state": "passed"
},
"cluster_filter": {
"log": "",
"state": "passed"
},
"cmaes_minimizer": {
"log": "",
"state": "passed"
},
"coarse_rna_scoring": {
"log": "",
"state": "passed"
},
"code_template_tests_app": {
"log": "",
"state": "passed"
},
"code_template_tests_citations": {
"log": "",
"state": "passed"
},
"code_template_tests_src": {
"log": "",
"state": "passed"
},
"code_template_tests_unit": {
"log": "",
"state": "passed"
},
"coenzymes": {
"log": "",
"state": "passed"
},
"combine_silent": {
"log": "",
"state": "passed"
},
"composition_energy_layers": {
"log": "",
"state": "passed"
},
"constel": {
"log": "",
"state": "passed"
},
"constraints_metric": {
"log": "",
"state": "passed"
},
"contactMap": {
"log": "",
"state": "passed"
},
"continuous_sewing_hasher": {
"log": "",
"state": "passed"
},
"control_flow_rs": {
"log": "",
"state": "passed"
},
"copy_rotamer_mover": {
"log": "",
"state": "passed"
},
"count_cycpep_sequences": {
"log": "",
"state": "passed"
},
"coupled_moves": {
"log": "",
"state": "passed"
},
"crankshaft_flip": {
"log": "",
"state": "passed"
},
"create_clash-based_repack_shell": {
"log": "",
"state": "passed"
},
"create_sequence_motif": {
"log": "",
"state": "passed"
},
"crossaln": {
"log": "",
"state": "passed"
},
"crosslinkermover_1_4_bbmb_asymm": {
"log": "",
"state": "passed"
},
"crosslinkermover_1_4_bbmb_c2_symmetry": {
"log": "",
"state": "passed"
},
"crosslinkermover_1_4_bbmb_s2_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_lanthionine": {
"log": "",
"state": "passed"
},
"crosslinkermover_methyllanthionine": {
"log": "",
"state": "passed"
},
"crosslinkermover_octahedral": {
"log": "",
"state": "passed"
},
"crosslinkermover_octahedral_s2_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_square_planar": {
"log": "",
"state": "passed"
},
"crosslinkermover_square_planar_d2_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_square_pyramidal": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal_asp": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal_c2_symmetry": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal_d2_symmetry": {
"log": "",
"state": "passed"
},
"crosslinkermover_thioether": {
"log": "",
"state": "passed"
},
"crosslinkermover_tma": {
"log": "",
"state": "passed"
},
"crosslinkermover_tma_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_planar": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_planar_c3_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_pyramidal": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_pyramidal_c3_symm": {
"log": "",
"state": "passed"
},
"cs_rosetta_rna": {
"log": "",
"state": "passed"
},
"cst_info": {
"log": "",
"state": "passed"
},
"cstfile_to_theozyme_pdb": {
"log": "",
"state": "passed"
},
"custom_basetype_packer_palette": {
"log": "",
"state": "passed"
},
"cyclization": {
"log": "",
"state": "passed"
},
"cycpep_design_pipeline": {
"log": "",
"state": "passed"
},
"cycpep_rdkit_metric": {
"log": "",
"state": "passed"
},
"cycpep_rigid_body_permutation_mover": {
"log": "",
"state": "passed"
},
"cycpep_symmetry_filter": {
"log": "",
"state": "passed"
},
"d_workflow": {
"log": "",
"state": "passed"
},
"database_jd2_compact_io": {
"log": "",
"state": "passed"
},
"database_jd2_io": {
"log": "",
"state": "passed"
},
"database_md5": {
"log": "",
"state": "passed"
},
"database_session_resource": {
"log": "",
"state": "passed"
},
"ddG_ensemble": {
"log": "",
"state": "passed"
},
"ddG_of_mutation": {
"log": "",
"state": "passed"
},
"ddG_scan": {
"log": "",
"state": "passed"
},
"ddG_sym": {
"log": "",
"state": "passed"
},
"dehydro_aa_patch": {
"log": "",
"state": "passed"
},
"density_denovo": {
"log": "",
"state": "passed"
},
"density_refine": {
"log": "",
"state": "passed"
},
"density_refine_symm": {
"log": "",
"state": "passed"
},
"density_tools": {
"log": "",
"state": "passed"
},
"design_glycans": {
"log": "",
"state": "passed"
},
"design_w_custom_palette-CAAs": {
"log": "",
"state": "passed"
},
"design_w_custom_palette-NCAAs": {
"log": "",
"state": "passed"
},
"design_w_custom_palette-RNA": {
"log": "",
"state": "passed"
},
"dgdp_aio": {
"log": "",
"state": "passed"
},
"dgdp_script": {
"log": "",
"state": "passed"
},
"dihedral_constraint_generator": {
"log": "",
"state": "passed"
},
"discontinuous_sewing_hasher": {
"log": "",
"state": "passed"
},
"distances": {
"log": "",
"state": "passed"
},
"disulfidize_beta_cys": {
"log": "",
"state": "passed"
},
"dna_interface_design": {
"log": "",
"state": "passed"
},
"dock_glycans": {
"log": "",
"state": "passed"
},
"dock_with_hotspot_place_simultaneously": {
"log": "",
"state": "passed"
},
"docking_distance_constraints": {
"log": "",
"state": "passed"
},
"docking_ensemble": {
"log": "",
"state": "passed"
},
"docking_ensemble_prepack": {
"log": "",
"state": "passed"
},
"docking_full_protocol": {
"log": "",
"state": "passed"
},
"docking_local_refine": {
"log": "",
"state": "passed"
},
"docking_local_refine_min": {
"log": "",
"state": "passed"
},
"docking_low_res": {
"log": "",
"state": "passed"
},
"docking_prepack": {
"log": "",
"state": "passed"
},
"docking_site_constraints": {
"log": "",
"state": "passed"
},
"doug_dock_design_min_mod2_cal_cal": {
"log": "",
"state": "passed"
},
"drrafter_error_estimation": {
"log": "",
"state": "passed"
},
"drrafter_run": {
"log": "",
"state": "passed"
},
"drrafter_setup": {
"log": "",
"state": "passed"
},
"drrafter_setup_build_missing": {
"log": "",
"state": "passed"
},
"drrafter_setup_protein_dock": {
"log": "",
"state": "passed"
},
"drrafter_setup_real_test_H": {
"log": "",
"state": "passed"
},
"drrafter_setup_real_test_H_no_init": {
"log": "",
"state": "passed"
},
"drrafter_setup_ribosome_test": {
"log": "",
"state": "passed"
},
"drrafter_setup_simple": {
"log": "",
"state": "passed"
},
"duplicate_header_guards": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa_bin_analysis": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa_dihedral": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa_scorefile": {
"log": "",
"state": "passed"
},
"entropy_correction": {
"log": "",
"state": "passed"
},
"enumerative_sampling": {
"log": "",
"state": "passed"
},
"enzdes": {
"log": "",
"state": "passed"
},
"enzscore_filter_dimetal": {
"log": "",
"state": "passed"
},
"enzscore_filter_dimetal_sym": {
"log": "",
"state": "passed"
},
"enzscore_filter_ligand": {
"log": "",
"state": "passed"
},
"enzscore_filter_metal": {
"log": "",
"state": "passed"
},
"enzscore_filter_metal_sym": {
"log": "",
"state": "passed"
},
"erraser_minimize": {
"log": "",
"state": "passed"
},
"esm_model_perplexity": {
"log": "",
"state": "passed"
},
"evolution": {
"log": "",
"state": "passed"
},
"exclusively_shared_jumps": {
"log": "",
"state": "passed"
},
"explicit_membrane": {
"log": "",
"state": "passed"
},
"extract_atomtree_diffs": {
"log": "",
"state": "passed"
},
"extract_pdbs": {
"log": "",
"state": "passed"
},
"farfar_mrna": {
"log": "",
"state": "passed"
},
"farnesyl": {
"log": "",
"state": "passed"
},
"fast_relax": {
"log": "",
"state": "passed"
},
"fast_relax_scripts": {
"log": "",
"state": "passed"
},
"favor_coupling_tensor": {
"log": "",
"state": "passed"
},
"favor_native_residue": {
"log": "",
"state": "passed"
},
"features": {
"log": "",
"state": "passed"
},
"features_database_schema": {
"log": "",
"state": "passed"
},
"features_parallel": {
"log": "",
"state": "passed"
},
"features_pdb": {
"log": "",
"state": "passed"
},
"features_pdb_mpi": {
"log": "",
"state": "passed"
},
"features_postgres": {
"log": "",
"state": "passed"
},
"features_scientific_benchmark": {
"log": "",
"state": "passed"
},
"fiber_diffraction": {
"log": "",
"state": "passed"
},
"fiber_diffraction_fad": {
"log": "",
"state": "passed"
},
"fit_helixparams": {
"log": "",
"state": "passed"
},
"fit_helixparams_a3b": {
"log": "",
"state": "passed"
},
"fit_helixparams_rms": {
"log": "",
"state": "passed"
},
"fix_alignment_to_match_pdb": {
"log": "",
"state": "passed"
},
"fixbb": {
"log": "",
"state": "passed"
},
"flexpepdock": {
"log": "",
"state": "passed"
},
"flexpepdock_abinitio": {
"log": "",
"state": "passed"
},
"fold_and_dock": {
"log": "",
"state": "passed"
},
"fold_cst_new": {
"log": "",
"state": "passed"
},
"fold_from_loops": {
"log": "",
"state": "passed"
},
"fragment_picker": {
"log": "",
"state": "passed"
},
"fragmentpicker_integration_demo": {
"log": "",
"state": "passed"
},
"fuzzy": {
"log": "",
"state": "passed"
},
"ga_ligand_dock": {
"log": "",
"state": "passed"
},
"ga_ligand_dock_amino_acid": {
"log": "",
"state": "passed"
},
"ga_ligand_dock_macrocycle": {
"log": "",
"state": "passed"
},
"gen_apo_grids": {
"log": "",
"state": "passed"
},
"gen_lig_grids": {
"log": "",
"state": "passed"
},
"generate_6Dloopclose": {
"log": "",
"state": "passed"
},
"genkic_bin_perturbing": {
"log": "",
"state": "passed"
},
"genkic_bin_sampling": {
"log": "",
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},
"genkic_bin_setting": {
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},
"genkic_dihedral_copying": {
"log": "",
"state": "passed"
},
"genkic_lowmemory_mode": {
"log": "",
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},
"genkic_rama_filter": {
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"state": "passed"
},
"genkic_ramaprepro_sampling": {
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},
"genkic_sugars": {
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"state": "passed"
},
"geometric_solvation": {
"log": "",
"state": "passed"
},
"glycan_anomers": {
"log": "",
"state": "passed"
},
"glycan_clash_check": {
"log": "",
"state": "passed"
},
"glycan_refinment": {
"log": "",
"state": "passed"
},
"glycan_relax": {
"log": "",
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},
"glycan_sequon_scanner": {
"log": "",
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},
"glycan_tree_relax": {
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},
"glycomutagenesis": {
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"state": "passed"
},
"glycopeptidedocking": {
"log": "",
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},
"glycopeptidedocking_diglyco_long": {
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"state": "passed"
},
"glycosylation": {
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"state": "passed"
},
"grid_scores_features": {
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},
"hbnet": {
"log": "",
"state": "passed"
},
"hbnet_asymm": {
"log": "",
"state": "passed"
},
"hbnet_energy": {
"log": "",
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},
"hbnet_energy_rosettascripts_linear": {
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},
"hbnet_energy_symm": {
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"state": "passed"
},
"hbnet_use_input_rot": {
"log": "",
"state": "passed"
},
"hbonds": {
"log": "",
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},
"hbonds_sp2": {
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"state": "passed"
},
"hbondstoresidue_selector": {
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},
"hbs_design": {
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},
"header_using_check": {
"log": "",
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},
"helical_bundle": {
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},
"helical_bundle_nonideal": {
"log": "",
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},
"helical_bundle_predict": {
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},
"helical_bundle_predict_psipred": {
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},
"helical_bundle_predict_psipred_with_helix_globals": {
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},
"helical_bundle_predict_sequence": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_skipping_residues": {
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},
"helix_from_sequence": {
"log": "",
"state": "passed"
},
"hierarchical_clustering": {
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},
"homodimer_fnd_ref2015_memb": {
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},
"hotspot_graft": {
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},
"hotspot_hashing": {
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},
"hotspot_stub_constraints": {
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},
"hshash_utils": {
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},
"hts_io": {
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"hybridization": {
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},
"hydrate": {
"log": "",
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},
"hydrate_relax": {
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},
"identify_cdr_clusters": {
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},
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},
"include_cc_check": {
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},
"interaction_graph_summary_metric": {
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},
"interface_energy": {
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},
"inv_kin_lig_loop_design": {
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"state": "passed"
},
"inverse_rotamer_remodel": {
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},
"iphold": {
"log": "",
"state": "passed"
},
"jd2test_PDBIO": {
"log": "",
"state": "passed"
},
"jd2test_PDBin_mmCIFout": {
"log": "",
"state": "passed"
},
"jd2test_PDBin_mmCIFout_extra_data_separate": {
"log": "",
"state": "passed"
},
"jd2test_mmCIFIO": {
"log": "",
"state": "passed"
},
"jd2test_mmCIFin_PDBout": {
"log": "",
"state": "passed"
},
"job_definition_script_vars": {
"log": "",
"state": "passed"
},
"jrelax": {
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},
"jscore": {
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},
"kinemage_grid_output": {
"log": "",
"state": "passed"
},
"kinematic_looprelax": {
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"state": "passed"
},
"ld_converter": {
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},
"ligand_database_io": {
"log": "",
"state": "passed"
},
"ligand_dock_7cpa": {
"log": "",
"state": "passed"
},
"ligand_dock_cholesterol": {
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"state": "passed"
},
"ligand_dock_ensemble": {
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},
"ligand_dock_grid": {
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},
"ligand_dock_script": {
"log": "",
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},
"ligand_motif_design": {
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},
"ligand_motif_discovery": {
"log": "",
"state": "passed"
},
"ligand_motif_identification": {
"log": "",
"state": "passed"
},
"ligand_water_docking": {
"log": "",
"state": "passed"
},
"longest_continuous_polar_segment_filter": {
"log": "",
"state": "passed"
},
"loop_creation": {
"log": "",
"state": "passed"
},
"loop_grower_N_term_symm": {
"log": "",
"state": "passed"
},
"loop_hash": {
"log": "",
"state": "passed"
},
"loop_modeling": {
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},
"make_and_perturb_bundle_multirepeat": {
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},
"make_exemplar": {
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},
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"log": "",
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},
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},
"make_mainchain_potential_symm_preproline": {
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},
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},
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},
"match_1c2t": {
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},
"match_1n9l": {
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},
"match_6cpa": {
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},
"match_xml": {
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"state": "passed"
},
"measure_lcaa_radii": {
"log": "",
"state": "passed"
},
"membrane_abinitio": {
"log": "",
"state": "passed"
},
"membrane_relax": {
"log": "",
"state": "passed"
},
"membrane_relax_hbond": {
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},
"metal_setup": {
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},
"metalloprotein_abrelax": {
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},
"metalloprotein_broker": {
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},
"metropolis_hastings": {
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},
"mf_fixbb_des": {
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},
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},
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},
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},
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},
"mhc_epitope": {
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},
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},
"min_pack_min": {
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},
"minimize_6Dloopclose": {
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},
"minimize_with_elec_dens": {
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},
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"mixed_monte_carlo": {
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},
"mm_params": {
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},
"mmtfIO_score_test": {
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},
"molfile_to_params": {
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},
"molfile_to_params_polymer": {
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},
"motif_dna_packer_design": {
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},
"motif_extraction": {
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},
"motif_score_filter": {
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},
"mp_dock": {
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"mp_dock_ensemble": {
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},
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"log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62155/mp_f19_relax: .test_got_timeout_kill.log\r\n",
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},
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},
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},
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},
"mp_mutate_relax": {
"log": "",
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"log": "",
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},
"mp_quick_relax": {
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"mp_quick_relax_ref2015_memb": {
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},
"mp_relax": {
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},
"mp_score_jd2": {
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},
"mp_span_ang_ref2015_memb": {
"log": "",
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},
"mp_span_from_pdb": {
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},
"mp_symdock": {
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},
"mp_symmetry_load": {
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},
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},
"mp_transform_optimize": {
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},
"mp_vis_emb": {
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},
"mpi_multistate_design": {
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},
"mpi_simple_cycpep_predict": {
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},
"mpi_simple_cycpep_predict_4level": {
"log": "",
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},
"mpi_simple_cycpep_predict_computing_pnear_to_all": {
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},
"mpil_find_pore_ahelical": {
"log": "",
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},
"mpil_find_pore_bbarrel": {
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},
"mpil_load_implicit_lipids": {
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},
"mr_protocols": {
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},
"multistage_rosetta_scripts": {
"log": "",
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},
"multistage_rosetta_scripts_clustering": {
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},
"multithreaded_fastdesign": {
"log": "",
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},
"multithreaded_fixbb": {
"log": "",
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},
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"mutate": {
"log": "",
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},
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"next_generation_KIC": {
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},
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"nonideal_rtmin": {
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"nucleobase_sample_around": {
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"number_of_residuetypes": {
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"oligourea_predict": {
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"oop_create": {
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},
"oop_dock_design": {
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"orbitals": {
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},
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},
"pH_mode": {
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},
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},
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},
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"log": "",
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},
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"log": "",
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},
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"pertmin": {
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"perturb_helical_bundle": {
"log": "",
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"phiselector": {
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},
"phosphonate": {
"log": "",
"state": "passed"
},
"phosphorylation": {
"log": "",
"state": "passed"
},
"place_simultaneously": {
"log": "",
"state": "passed"
},
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"state": "passed"
},
"pna": {
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},
"pna_base_pairs": {
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"pocket_measure": {
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},
"pocket_relax": {
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"pocket_suggest_targets": {
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"polyaramid_test_trivial": {
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"pose_sewing": {
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"posttranslationalmod_io": {
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},
"ppi_v3_suiteA": {
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"ppi_v3_suiteB": {
"log": "",
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},
"ppi_v3_suiteC": {
"log": "",
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},
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"log": "",
"state": "passed"
},
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},
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"log": "",
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"log": "",
"state": "passed"
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"ppk": {
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"state": "passed"
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"proteinMPNN_model_perplexity": {
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},
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"state": "passed"
},
"pwsho": {
"log": "",
"state": "passed"
},
"pymol_cif": {
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"state": "passed"
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"r_pdb2top": {
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},
"r_rmsf": {
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},
"ralford_dump_rotamers": {
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},
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},
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"log": "",
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},
"rb_recces": {
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"state": "passed"
},
"rdkit_metrics": {
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"state": "passed"
},
"read_polymeric_components": {
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},
"readin_dna_rna_protein": {
"log": "",
"state": "passed"
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"real_virt_mover": {
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"state": "passed"
},
"recces_turner": {
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"state": "passed"
},
"recon_design": {
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"state": "passed"
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"recon_design_mpi": {
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"referencepose_mutateresidue": {
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"state": "passed"
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"relax_w_allatom_cst": {
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"remodel": {
"log": "",
"state": "passed"
},
"remodel_disulfides": {
"log": "",
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},
"remodel_disulfides_rosettascripts": {
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},
"remodel_helical_repeat": {
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"log": "",
"state": "passed"
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"repeat_propagate": {
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"repeat_propagate_v2": {
"log": "",
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"repeat_propagate_v3": {
"log": "",
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},
"repeat_relax": {
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"replica_docking": {
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"report_hbonds_for_plugin": {
"log": "",
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"res_lipo_ref2015_memb": {
"log": "",
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},
"residue_energy_breakdown": {
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},
"resource_database_locator": {
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"state": "passed"
},
"restype_converter": {
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},
"revold": {
"log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62155/revold: .test_got_timeout_kill.log\r\n",
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},
"rings": {
"log": "",
"state": "passed"
},
"rna_add_WC_stats": {
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},
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},
"rna_cluster": {
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},
"rna_denovo": {
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"rna_denovo_RNP_low_res": {
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},
"rna_denovo_RNP_refine_native": {
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"rna_denovo_base_pair_constraints": {
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"rna_denovo_base_pair_setup": {
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"rna_denovo_bps": {
"log": "",
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"rna_denovo_bps_fixed_ends": {
"log": "",
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},
"rna_denovo_bps_helix_ends": {
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"rna_denovo_dna_bridge": {
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},
"rna_denovo_fragment_homology_exclusion": {
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},
"rna_denovo_grid_vdw": {
"log": "",
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},
"rna_denovo_lariat": {
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},
"rna_denovo_new_FT_2in_dens": {
"log": "",
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},
"rna_denovo_new_FT_5P_j12_leadzyme": {
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},
"rna_denovo_new_FT_RNP_2prot_dens": {
"log": "",
"state": "passed"
},
"rna_denovo_new_FT_rna_two_chains": {
"log": "",
"state": "passed"
},
"rna_denovo_new_libs": {
"log": "",
"state": "passed"
},
"rna_denovo_symm_hack": {
"log": "",
"state": "passed"
},
"rna_design": {
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"state": "passed"
},
"rna_farfar_block_stack": {
"log": "",
"state": "passed"
},
"rna_farfar_noncanonical_hairpin": {
"log": "",
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},
"rna_farfar_syn_chi_res": {
"log": "",
"state": "passed"
},
"rna_helix": {
"log": "",
"state": "passed"
},
"rna_minimize": {
"log": "",
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},
"rna_minimize_6D_loop_close": {
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"state": "passed"
},
"rna_motif": {
"log": "",
"state": "passed"
},
"rna_predict_chem_map": {
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},
"rna_puzzle11_H2H3H4_run3_connectU40": {
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},
"rna_puzzle12_P5P6P7_DMS": {
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},
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},
"rna_puzzle5_p2_GAAA_mini": {
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},
"rna_puzzle6_U75G76A77_on_thread1": {
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},
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},
"rna_ribosome_tether": {
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},
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},
"rna_screen_phosphates": {
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},
"rna_suitename": {
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},
"rnp_ddg_calc_mut": {
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},
"rnp_ddg_calc_setup": {
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},
"rnp_ddg_calc_wt": {
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},
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},
"rnp_ddg_relax_command_1": {
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},
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},
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},
"rnp_ddg_relax_setup": {
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},
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},
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},
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},
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},
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},
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},
"rosetta_scripts_setup": {
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},
"rosie_ligand_docking": {
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},
"rotamer_probability": {
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},
"rotamer_recovery": {
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},
"rotamer_recovery_compare_two_structures": {
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},
"rs_flexbbmoves": {
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},
"rs_loophash": {
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},
"sample_seq_from_probs": {
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},
"sasa_metric_options": {
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},
"score12_docking": {
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},
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},
"score_jd2": {
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},
"score_only_silence": {
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},
"sdf_reader": {
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},
"secondary_structure_output": {
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},
"seed_ensemble_JD2_JI": {
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},
"select_best_unique_ligand_poses": {
"log": "",
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},
"selected_residue_count_metric": {
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},
"sequence_profile_constraints": {
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},
"sequence_recovery": {
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},
"sequence_tolerance": {
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},
"set_torsion": {
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},
"shobuns": {
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},
"silent2frag": {
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},
"sim_cryo": {
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},
"simple_cycpep_predict": {
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},
"simple_cycpep_predict_1_4_bbmb": {
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},
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},
"simple_cycpep_predict_anglelength": {
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},
"simple_cycpep_predict_beta_thioether_lariat": {
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},
"simple_cycpep_predict_bondangle_bondlength": {
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},
"simple_cycpep_predict_cartesian": {
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},
"simple_cycpep_predict_cispro": {
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},
"simple_cycpep_predict_cterm_isopeptide_lariat": {
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},
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},
"simple_cycpep_predict_design": {
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},
"simple_cycpep_predict_lanthionine": {
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},
"simple_cycpep_predict_nmethyl": {
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},
"simple_cycpep_predict_nterm_isopeptide_lariat": {
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},
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},
"simple_cycpep_predict_octahedral_metal": {
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},
"simple_cycpep_predict_peptoid": {
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},
"simple_cycpep_predict_setting": {
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},
"simple_cycpep_predict_sidechain_isopeptide": {
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},
"simple_cycpep_predict_sidechain_isopeptide_reverse": {
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},
"simple_cycpep_predict_square_planar_metal": {
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},
"simple_cycpep_predict_square_pyramidal_metal": {
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},
"simple_cycpep_predict_symm_gly": {
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},
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},
"simple_cycpep_predict_tbmb": {
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},
"simple_cycpep_predict_terminal_disulfide": {
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},
"simple_cycpep_predict_terminal_disulfide_internal_permutations": {
"log": "",
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},
"simple_cycpep_predict_terminal_disulfide_tails": {
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},
"simple_cycpep_predict_terminal_disulfide_tails_2": {
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},
"simple_cycpep_predict_tetrahedral_metal": {
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},
"simple_cycpep_predict_tetrahedral_metal_asp": {
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},
"simple_cycpep_predict_thioether_cis_sampling": {
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},
"simple_cycpep_predict_thioether_lariat": {
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},
"simple_cycpep_predict_tma": {
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},
"simple_cycpep_predict_trigonal_planar_metal": {
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},
"simple_cycpep_predict_trigonal_pyramidal_metal": {
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},
"simple_dna_test": {
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},
"simple_glycosylation": {
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},
"simple_glycosylation_alternate_AAs": {
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},
"simple_grafting_movers": {
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},
"simple_hbondstoatom": {
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},
"simple_metric_cache": {
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},
"simple_metric_features": {
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},
"simple_metric_filter": {
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},
"simple_metrics": {
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},
"simple_metrics_b_factor": {
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},
"simple_metrics_in_protocols": {
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},
"simple_metrics_per_residue": {
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},
"site_constraint": {
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},
"small_molecule_lattice_dock": {
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},
"smallmover_resselector": {
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},
"smart_annealer": {
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},
"splice_in_4loops_longer": {
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},
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},
"splice_out_H1_H2_longer": {
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},
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},
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},
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},
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},
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},
"splice_out_L1_L2_longer": {
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},
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},
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},
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},
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},
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},
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},
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},
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},
"struc_set_fragment_picker": {
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},
"super_aln": {
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},
"supercharge": {
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},
"surface_docking": {
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},
"swa_protein_CCDclose": {
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},
"swa_protein_build_at_Cterminus": {
"log": "",
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},
"swa_protein_build_at_Nterminus": {
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},
"swa_protein_cluster": {
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},
"swa_protein_combine_loops": {
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},
"swa_protein_loop_sampler": {
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},
"swa_protein_prepack": {
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},
"swa_rna_erraser": {
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},
"swa_rna_gagu_01_append": {
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},
"swa_rna_gagu_02_prepend": {
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},
"swa_rna_gagu_03_append_to_silent": {
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},
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},
"swa_rna_gagu_05_prepend_to_5primeterminus": {
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},
"swa_rna_gagu_06_append_to_3primeterminus": {
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},
"swa_rna_gagu_07_prepend_dinucleotide": {
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},
"swa_rna_gagu_08_append_dinucleotide": {
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},
"swa_rna_gagu_09_sample_virtual_ribose": {
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},
"swa_rna_gagu_10_prepend_and_ccd_close": {
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},
"swa_rna_gagu_11_append_and_ccd_close": {
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},
"swa_rna_gagu_12_helix_addition": {
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},
"swa_rna_gagu_13_chunk_combination_and_closure": {
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},
"swa_rna_gagu_14_combine_long_loop_filtering": {
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},
"swa_rna_gagu_15_combine_long_loop_sampling": {
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},
"swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": {
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},
"swa_rna_gagu_17_append_floating_base": {
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},
"swa_rna_gagu_18_rebuild_bulge": {
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},
"swa_rna_gagu_19_prepend_floating_base_by_jump": {
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},
"swa_rna_gagu_20_append_floating_base_by_jump": {
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},
"swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": {
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},
"swa_rna_gagu_22_prepend_and_kic_close": {
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},
"swa_rna_gagu_23_append_and_kic_close": {
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},
"swa_rna_loop_clusterer": {
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},
"swa_rna_loop_sampler": {
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},
"sweep_respair_energies": {
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},
"swm_add_rosettascripts": {
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},
"swm_beta_peptide_loop": {
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},
"swm_build_full_model": {
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},
"swm_dna_bridge": {
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},
"swm_dna_loop": {
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},
"swm_general_polymer_sampler": {
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},
"swm_l_rna": {
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},
"swm_protein_CCDmove": {
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},
"swm_protein_from_scratch": {
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},
"swm_protein_loop_sampler": {
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},
"swm_protein_move_inside_coiledcoil_by_bond": {
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},
"swm_protein_move_inside_helix_by_bond": {
"log": "",
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},
"swm_protein_preminimize": {
"log": "",
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},
"swm_rna_base_pair_constraints": {
"log": "",
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},
"swm_rna_checkpoint_partition": {
"log": "",
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},
"swm_rna_fourwayjunction": {
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},
"swm_rna_loop_design": {
"log": "",
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},
"swm_rna_move_align_dock": {
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},
"swm_rna_move_inside_helix_by_bond": {
"log": "",
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},
"swm_rna_move_inside_helix_by_jump": {
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},
"swm_rna_move_two_strands": {
"log": "",
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},
"swm_rna_nickedhelix": {
"log": "",
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},
"swm_rna_protonated_adenosine": {
"log": "",
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},
"swm_rna_singleloop": {
"log": "",
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},
"swm_rna_srl_triplet": {
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},
"symm_disulfidize": {
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},
"symm_rotamer_boltzmann": {
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},
"symmetric_cycpep_align_and_symmetrize": {
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},
"symmetric_docking": {
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},
"symmetrical_residue_selector": {
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},
"symmetry_data_resource": {
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},
"symmetry_multicomponent": {
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},
"target_clash": {
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},
"task_selector": {
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},
"tcrmodel": {
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},
"template_features": {
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},
"tensorflow_connection_test": {
"log": "",
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},
"tensorflow_manager": {
"log": "",
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},
"tensorflow_simple_model_load_and_evaluate": {
"log": "",
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},
"test1_benchmark": {
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},
"test_computed_saxs_spectrum": {
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},
"test_d_l_readin": {
"log": "",
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},
"test_degreaser": {
"log": "",
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},
"test_energy_method_options": {
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},
"test_idealize": {
"log": "",
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},
"test_rosetta_thread_manager_advanced_API": {
"log": "",
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},
"test_rosetta_thread_manager_basic_API": {
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},
"thermal_sampler": {
"log": "",
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},
"thread_local_tracers_check": {
"log": "",
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},
"threefold_symm_peptide_design": {
"log": "",
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},
"threefoldlinkermover_tbmb": {
"log": "",
"state": "passed"
},
"threefoldlinkermover_tbmb_symmetric": {
"log": "",
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},
"tna_base_pairs": {
"log": "",
"state": "passed"
},
"torsion_restricted_sampling": {
"log": "",
"state": "passed"
},
"trRosetta": {
"log": "",
"state": "passed"
},
"trRosettaConstraintGenerator": {
"log": "",
"state": "passed"
},
"trRosettaConstraintGenerator_rosettascripts": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover": {
"log": "",
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},
"trRosettaProtocolMover_rosettascripts": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts_diskwrite": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts_diskwrite_only": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_cst_file_write": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_cst_file_write_only": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_init_by_bins": {
"log": "",
"state": "passed"
},
"unfolded_state_energy_calc": {
"log": "",
"state": "passed"
},
"validate_database": {
"log": "",
"state": "passed"
},
"vancomycin": {
"log": "",
"state": "passed"
},
"vip": {
"log": "",
"state": "passed"
},
"voids_penalty_energy_design": {
"log": "",
"state": "passed"
},
"voids_penalty_energy_design_symmetry": {
"log": "",
"state": "passed"
},
"write_mol_file": {
"log": "",
"state": "passed"
},
"zinc_heterodimer": {
"log": "",
"state": "passed"
},
"zinc_homodimer_design": {
"log": "",
"state": "passed"
},
"zinc_homodimer_setup": {
"log": "",
"state": "passed"
}
}
}