Test: mac.clang.build.debug 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20707」
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Daemon: hikaru-2     Started at: 2025-04-02 16:14:28     Run time: 0:01:42      State: failed


Running: /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python-3.9.clang/707eb77cedeac3e91130adc5f9ccf882/bin/python3.9 ./scons.py bin cxx=clang extras= -j32 scons: Reading SConscript files ... Running versioning script ... Done. (0.2 seconds) Number of option files updated: 0 Total 4709 options. Updating submodules needed for compilation. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed scons: done reading SConscript files. scons: Building targets ... clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/motifs/LigandDiscoverySearch.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/motifs/LigandDiscoverySearch.cc In file included from src/protocols/motifs/LigandDiscoverySearch.cc:131: src/protocols/motifs/LigandDiscoverySearch.hh:276:27: error: no type named 'ProteinGridOP' in namespace 'protocols::protein_grid'; did you mean 'ProteinGrid'? protocols::protein_grid::ProteinGridOP clash_pose_grid_; ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ProteinGrid src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: 'ProteinGrid' declared here class ProteinGrid; // fwd declaration ^ In file included from src/protocols/motifs/LigandDiscoverySearch.cc:131: src/protocols/motifs/LigandDiscoverySearch.hh:276:41: error: field has incomplete type 'protocols::protein_grid::ProteinGrid' protocols::protein_grid::ProteinGridOP clash_pose_grid_; ^ src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: forward declaration of 'protocols::protein_grid::ProteinGrid' class ProteinGrid; // fwd declaration ^ In file included from src/protocols/motifs/LigandDiscoverySearch.cc:131: src/protocols/motifs/LigandDiscoverySearch.hh:281:27: error: no type named 'ProteinGridOP' in namespace 'protocols::protein_grid'; did you mean 'ProteinGrid'? protocols::protein_grid::ProteinGridOP sf_pose_grid_; ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ProteinGrid src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: 'ProteinGrid' declared here class ProteinGrid; // fwd declaration ^ In file included from src/protocols/motifs/LigandDiscoverySearch.cc:131: src/protocols/motifs/LigandDiscoverySearch.hh:281:41: error: field has incomplete type 'protocols::protein_grid::ProteinGrid' protocols::protein_grid::ProteinGridOP sf_pose_grid_; ^ src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: forward declaration of 'protocols::protein_grid::ProteinGrid' class ProteinGrid; // fwd declaration ^ src/protocols/motifs/LigandDiscoverySearch.cc:772:27: error: no matching constructor for initialization of 'protocols::protein_grid::ProteinGrid' clash_pose_grid_(new protocols::protein_grid::ProteinGrid(working_pose_, resolution_increase_factor, binding_pocket_center_xyz, binding_pocket_dimensions)); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/protocols/protein_grid/ProteinGrid.hh:62:2: note: candidate constructor not viable: no known conversion from 'utility::vector1<core::Size>' (aka 'vector1<unsigned long>') to 'numeric::xyzVector<int>' for 3rd argument ProteinGrid(core::pose::PoseOP in_pose, core::Real resolution, numeric::xyzVector<int> sub_area_center, utility::vector1<core::Size> sub_region_dimensions); ^ src/protocols/protein_grid/ProteinGrid.hh:59:2: note: candidate constructor not viable: requires 3 arguments, but 4 were provided ProteinGrid(core::pose::PoseOP in_pose, numeric::xyzVector<int> sub_area_center, utility::vector1<core::Size> sub_region_dimensions); ^ src/protocols/protein_grid/ProteinGrid.hh:56:2: note: candidate constructor not viable: requires 2 arguments, but 4 were provided ProteinGrid(core::pose::PoseOP in_pose, core::Real resolution); ^ src/protocols/protein_grid/ProteinGrid.hh:53:2: note: candidate constructor not viable: requires single argument 'in_pose', but 4 arguments were provided ProteinGrid(core::pose::PoseOP in_pose); ^ src/protocols/protein_grid/ProteinGrid.hh:65:2: note: candidate constructor not viable: requires single argument 'other', but 4 arguments were provided ProteinGrid( ProteinGrid const & other ); ^ src/protocols/protein_grid/ProteinGrid.hh:137:2: note: candidate constructor not viable: requires 0 arguments, but 4 were provided ProteinGrid(); ^ src/protocols/motifs/LigandDiscoverySearch.cc:775:4: error: expected expression else ^ src/protocols/motifs/LigandDiscoverySearch.cc:794:41: error: expected ';' after expression protocols::protein_grid::ProteinGridOP working_sf_pose_grid(new protocols::protein_grid::ProteinGrid(*sf_pose_grid_)); ^ ; src/protocols/motifs/LigandDiscoverySearch.cc:794:28: error: no member named 'ProteinGridOP' in namespace 'protocols::protein_grid' protocols::protein_grid::ProteinGridOP working_sf_pose_grid(new protocols::protein_grid::ProteinGrid(*sf_pose_grid_)); ~~~~~~~~~~~~~~~~~~~~~~~~~^ src/protocols/motifs/LigandDiscoverySearch.cc:800:24: error: use of undeclared identifier 'working_sf_pose_grid' occupied_ratios[1] = working_sf_pose_grid->get_grid_occupied_cell_ratio(); ^ src/protocols/motifs/LigandDiscoverySearch.cc:801:24: error: use of undeclared identifier 'working_sf_pose_grid' occupied_ratios[2] = working_sf_pose_grid->get_sub_grid_occupied_cell_ratio(); ^ src/protocols/motifs/LigandDiscoverySearch.cc:958:7: error: use of undeclared identifier 'working_sf_pose_grid' working_sf_pose_grid->placed_ligand_space_fill_analysis(ligresOP); ^ src/protocols/motifs/LigandDiscoverySearch.cc:961:30: error: use of undeclared identifier 'working_sf_pose_grid' space_fill_scores[1] = working_sf_pose_grid->get_grid_occupied_cell_ratio(); ^ src/protocols/motifs/LigandDiscoverySearch.cc:962:30: error: use of undeclared identifier 'working_sf_pose_grid' space_fill_scores[2] = working_sf_pose_grid->get_sub_grid_occupied_cell_ratio(); ^ src/protocols/motifs/LigandDiscoverySearch.cc:979:8: error: use of undeclared identifier 'working_sf_pose_grid' working_sf_pose_grid->export_protein_matrix_to_pdb(matrix_pdb_prefix); ^ 14 errors generated. clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/basic/options/keys/OptionKeys15.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/basic/options/keys/OptionKeys15.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/utility/crash_report.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/utility/crash_report.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/core/io/mmtf/mmtf_writer.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/core/io/mmtf/mmtf_writer.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/core/io/pose_to_sfr/PoseToStructFileRepConverter.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/core/io/pose_to_sfr/PoseToStructFileRepConverter.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/ligand_docking/HighResDocker.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/ligand_docking/HighResDocker.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/ligand_docking/HighResEnsemble.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/ligand_docking/HighResEnsemble.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/features/ProtocolFeatures.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/features/ProtocolFeatures.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/apps/public/motif_tools/extract_motifs.o -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/apps/public/motif_tools/extract_motifs.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/apps/public/motif_tools/incorporate_motifs.o -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/apps/public/motif_tools/incorporate_motifs.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.o -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/apps/public/nmr/ligand_transform_with_pcs.o -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/apps/public/nmr/ligand_transform_with_pcs.cc clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/apps/public/motif_ligand_discovery/remove_duplicate_motifs.o -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/apps/public/motif_ligand_discovery/remove_duplicate_motifs.cc scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/motifs/LigandDiscoverySearch.os] Error 1 In file included from src/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.cc:126: src/protocols/motifs/LigandDiscoverySearch.hh:276:27: error: no type named 'ProteinGridOP' in namespace 'protocols::protein_grid'; did you mean 'ProteinGrid'? protocols::protein_grid::ProteinGridOP clash_pose_grid_; ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ProteinGrid src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: 'ProteinGrid' declared here class ProteinGrid; // fwd declaration ^ In file included from src/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.cc:126: src/protocols/motifs/LigandDiscoverySearch.hh:276:41: error: field has incomplete type 'protocols::protein_grid::ProteinGrid' protocols::protein_grid::ProteinGridOP clash_pose_grid_; ^ src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: forward declaration of 'protocols::protein_grid::ProteinGrid' class ProteinGrid; // fwd declaration ^ In file included from src/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.cc:126: src/protocols/motifs/LigandDiscoverySearch.hh:281:27: error: no type named 'ProteinGridOP' in namespace 'protocols::protein_grid'; did you mean 'ProteinGrid'? protocols::protein_grid::ProteinGridOP sf_pose_grid_; ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ ProteinGrid src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: 'ProteinGrid' declared here class ProteinGrid; // fwd declaration ^ In file included from src/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.cc:126: src/protocols/motifs/LigandDiscoverySearch.hh:281:41: error: field has incomplete type 'protocols::protein_grid::ProteinGrid' protocols::protein_grid::ProteinGridOP sf_pose_grid_; ^ src/protocols/protein_grid/ProteinGrid.fwd.hh:20:7: note: forward declaration of 'protocols::protein_grid::ProteinGrid' class ProteinGrid; // fwd declaration ^ 4 errors generated. scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/apps/public/motif_ligand_discovery/ligand_discovery_search_protocol.o] Error 1 scons: building terminated because of errors.
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