Test: mac.clang.python39.integration 「view this page in B3 βῆτα server」
Branch: rosetta:main 「revision: №62148」
Test files: 「file-system-view」 「file-list-view」
Daemon: hojo-3     Started at: 2025-03-18 19:34:26     Run time: 0:50:09      State: failed

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AlignPDBInfoToSequences AnchorFinder AnchoredDesign AnchoredPDBCreator BFactorSelector CCS_PARCS ContactMolecularSurface DARC_electrostatics DARC_make_ray_files DARC_sampling_on_the_fly DARC_shapeonly DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FavorSequenceProfileMover FilterReportAsPoseExtraScoresMover FloppyTail HDXEnergy InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_metrics InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LoopAnalyzer LoopLengthChange PDB_diagnostic ProQ RBOut RescorePDDF ResidueDisorder RunSimpleMetric_b_factor_test SID_ERMS_prediction SID_rescore SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data ambiguous_nmr_distance_constraint angle_recovery_stats antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autosetup_metals_centroid backrub backrub_interface_ddG backrub_pilot balancedKIC batch_relax beta_strand_homodimer binselector binselector_probins broker broker_membrane buried_unsat_kinemage buried_unsat_voids_hbnet_design_symm c-term_conjugation calculate_sasa cart_min_glycans cartesianddg ccd_ends_graft_mover_rs centroid_disulfide_scores centroid_from_fullatom cl_complex_rescore classic_relax_1a19 cleanAlignment cluster_alns cmaes_minimizer combine_silent constel constraints_metric contactMap control_flow_rs coupled_moves create_clash-based_repack_shell create_sequence_motif crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp cs_rosetta_rna cst_info cstfile_to_theozyme_pdb custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_rdkit_metric cycpep_rigid_body_permutation_mover cycpep_symmetry_filter database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA dgdp_aio dgdp_script dihedral_constraint_generator distances dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal drrafter_error_estimation drrafter_run energy_based_clustering_alpha_aa_scorefile entropy_correction enumerative_sampling enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution exclusively_shared_jumps farfar_mrna farnesyl fast_relax favor_coupling_tensor favor_native_residue features_pdb fiber_diffraction fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_and_dock fold_cst_new fold_from_loops fragment_picker fragmentpicker_integration_demo fuzzy ga_ligand_dock ga_ligand_dock_amino_acid ga_ligand_dock_macrocycle gen_lig_grids genkic_sugars geometric_solvation glycan_anomers glycan_clash_check glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycopeptidedocking glycopeptidedocking_diglyco_long grid_scores_features hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helical_bundle_predict_psipred helical_bundle_predict_psipred_with_helix_globals helical_bundle_predict_sequence helical_bundle_predict_skipping_residues homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hshash_utils hts_io hybridization hydrate hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design iphold jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout jrelax jscore kinemage_grid_output kinematic_looprelax ld_converter ligand_database_io ligand_dock_7cpa ligand_dock_cholesterol ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_motif_discovery ligand_motif_identification ligand_water_docking loop_creation loop_grower_N_term_symm loop_hash loop_modeling make_exemplar make_symmdef_file match_1c2t match_1n9l match_6cpa match_xml membrane_abinitio membrane_relax membrane_relax_hbond metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mg_modeler mg_modeler_lores mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mixed_monte_carlo motif_dna_packer_design motif_extraction motif_score_filter mp_dock mp_dock_ensemble mp_dock_prepack mp_dock_setup mp_domain_assembly mp_domain_assembly_FtsQ mp_f19_relax mp_find_interface mp_interface_statistics mp_ligand_interface mp_loadtime mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_relax_w_ligand mp_score_jd2 mp_span_ang_ref2015_memb mp_span_from_pdb mp_symdock mp_symmetry_load mp_transform mp_transform_optimize mp_vis_emb mpil_find_pore_ahelical mpil_find_pore_bbarrel mpil_load_implicit_lipids mr_protocols mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities nonideal_rtmin oligourea_predict oop_create oop_design oop_dock_design orbitals pH_mode pepspec pepspec_anchor_dock peptiderive per_residue_energies per_residue_sc_sasa per_residue_solvent_exposure pertmin phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets pose_sewing posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif ralford_dump_rotamers range_relax_w_cst rb_recces rdkit_metrics readin_dna_rna_protein real_virt_mover recon_design relax_w_allatom_cst remodel remodel_disulfides remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens report_hbonds_for_plugin res_lipo_ref2015_memb residue_energy_breakdown rna_assemble rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_design rna_farfar_noncanonical_hairpin rna_minimize rna_motif rna_predict_chem_map rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rollmover rosetta_scripts_include rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sample_seq_from_probs sasa_metric_options score12_docking score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI selected_residue_count_metric sequence_tolerance shobuns sim_cryo simple_cycpep_predict simple_cycpep_predict_1_4_bbmb simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_tbmb simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_glycosylation simple_glycosylation_alternate_AAs simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_b_factor simple_metrics_in_protocols simple_metrics_per_residue site_constraint small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stepwise_lores stored_residue_subset struc_set_fragment_picker super_aln supercharge swa_protein_CCDclose swa_protein_build_at_Cterminus swa_protein_build_at_Nterminus swa_protein_combine_loops swa_protein_loop_sampler swa_protein_prepack swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_sampler swm_add_rosettascripts swm_beta_peptide_loop swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_CCDmove swm_protein_from_scratch swm_protein_loop_sampler swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_protein_preminimize swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_rotamer_boltzmann symmetric_docking symmetry_multicomponent target_clash tcrmodel template_features test1_benchmark test_computed_saxs_spectrum test_d_l_readin thermal_sampler threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling vip write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup

Test Log

Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python-3.9.clang/707eb77cedeac3e91130adc5f9ccf882/bin/python3.9 ./scons.py bin mode=release cxx=clang extras= -j32 Running: unset __PYVENV_LAUNCHER__ && . /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/activate && cd /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration && python ./integration.py --mode=release --compiler=clang --extras= --timeout=480 -j32 --skip-comparison --additional_flags "-in:path:database_cache_dir /Volumes/scratch/b3.w/rosetta/commits/rosetta/.database-binaries/macclangrelease" Running integration script... Command line: unset __PYVENV_LAUNCHER__ && . /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/activate && cd /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration && python ./integration.py --mode=release --compiler=clang --extras= --timeout=480 -j32 --skip-comparison --additional_flags "-in:path:database_cache_dir /Volumes/scratch/b3.w/rosetta/commits/rosetta/.database-binaries/macclangrelease" Using Rosetta source dir at: /Volumes/scratch/b3.w/rosetta/commits/rosetta/source Using Rosetta database dir at:/Volumes/scratch/b3.w/rosetta/commits/rosetta/database Current Versions Tested: MAIN: 05ba3ce142c657ded53097d3c9b34f4dc5a62433 TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85 DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92 Python: `/Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python` Outdir: new No correct command.sh file found for test_rosetta_thread_manager_basic_API. Skipping. No correct command.sh file found for test_rosetta_thread_manager_advanced_API. Skipping. No correct command.sh file found for proteinMPNN_model_perplexity. Skipping. No correct command.sh file found for multithreaded_packrotamersmover. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy_symm. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy. Skipping. No correct command.sh file found for multithreaded_fixbb. Skipping. No correct command.sh file found for multithreaded_fastdesign. Skipping. No correct command.sh file found for bcl_fragment_mutate. Skipping. No correct command.sh file found for antibody_cc. Skipping. No correct command.sh file found for replica_docking. Skipping. No correct command.sh file found for abinitio_with_trRosetta. Skipping. No correct command.sh file found for trRosetta_test_predict_ubiquitin_init_by_bins. Skipping. No correct command.sh file found for trRosettaProtocolMover. Skipping. No correct command.sh file found for trRosetta_test_predict. Skipping. No correct command.sh file found for smart_annealer. Skipping. No correct command.sh file found for PTMPrediction. Skipping. Running Test mp_f19_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_f19_relax/command.sh No correct command.sh file found for mpi_simple_cycpep_predict_computing_pnear_to_all. Skipping. No correct command.sh file found for recon_design_mpi. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict_4level. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict. Skipping. No correct command.sh file found for features_pdb_mpi. Skipping. Running Test app_exception_handling ulimit -t 960 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/app_exception_handling/command.sh Running Test dgdp_script ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dgdp_script/command.sh Running Test simple_cycpep_predict_square_pyramidal_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_square_pyramidal_metal/command.sh Running Test auto-drrafter_setup_run_R2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R2/command.sh Running Test dgdp_aio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dgdp_aio/command.sh Running Test database_md5 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_md5/command.sh Running Test ddG_of_mutation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_of_mutation/command.sh Running Test antibody_H3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_H3/command.sh Running Test fast_relax_scripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fast_relax_scripts/command.sh Running Test cyclization ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cyclization/command.sh Running Test remodel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel/command.sh Running Test ccd_ends_graft_mover_rs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ccd_ends_graft_mover_rs/command.sh Running Test glycopeptidedocking_diglyco_long ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycopeptidedocking_diglyco_long/command.sh Running Test bundlegridsampler_composition_energy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_composition_energy/command.sh Running Test add_helix_sequence_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_helix_sequence_constraints/command.sh Running Test glycan_tree_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_tree_relax/command.sh Running Test crosslinkermover_octahedral ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_octahedral/command.sh Running Test ligand_dock_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_ensemble/command.sh Running Test nonideal_rtmin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/nonideal_rtmin/command.sh Running Test ga_ligand_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock/command.sh Running Test ddG_sym ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_sym/command.sh Running Test mp_relax_w_ligand ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_relax_w_ligand/command.sh Running Test buried_unsat_voids_hbnet_design_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design_symm/command.sh Running Test add_helix_sequence_constraints_advanced_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_helix_sequence_constraints_advanced_setup/command.sh Running Test auto-drrafter_setup_run_R1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R1/command.sh Running Test crosslinkermover_tma ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tma/command.sh Running Test ppi_v3_suiteC ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteC/command.sh Running Test peptiderive ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/peptiderive/command.sh Running Test drrafter_run ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_run/command.sh Running Test rna_denovo_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_lariat/command.sh Running Test voids_penalty_energy_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/voids_penalty_energy_design/command.sh Finished rna_denovo_lariat in 153 seconds [~ 55 test (6.756756756756757%) started, 759 in queue, 32 running] Running Test swm_dna_bridge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_dna_bridge/command.sh Finished auto-drrafter_setup_run_R1 in 165 seconds [~ 56 test (6.87960687960688%) started, 758 in queue, 32 running] Running Test flexpepdock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/flexpepdock/command.sh Finished voids_penalty_energy_design in 175 seconds [~ 57 test (7.002457002457002%) started, 757 in queue, 32 running] Running Test swm_rna_srl_triplet ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_srl_triplet/command.sh Finished ppi_v3_suiteC in 191 seconds [~ 58 test (7.125307125307125%) started, 756 in queue, 32 running] Running Test ga_ligand_dock_macrocycle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock_macrocycle/command.sh Finished drrafter_run in 195 seconds [~ 59 test (7.2481572481572485%) started, 755 in queue, 32 running] Running Test validate_database ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/validate_database/command.sh Finished ligand_dock_ensemble in 196 seconds [~ 60 test (7.371007371007371%) started, 754 in queue, 32 running] Running Test swa_protein_CCDclose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_CCDclose/command.sh Finished buried_unsat_voids_hbnet_design_symm in 196 seconds [~ 61 test (7.493857493857494%) started, 753 in queue, 32 running] Running Test ddG_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_ensemble/command.sh Finished peptiderive in 197 seconds [~ 62 test (7.616707616707616%) started, 752 in queue, 32 running] Running Test coupled_moves ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coupled_moves/command.sh Finished crosslinkermover_tma in 198 seconds [~ 63 test (7.73955773955774%) started, 751 in queue, 32 running] Running Test job_definition_script_vars ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/job_definition_script_vars/command.sh Finished ccd_ends_graft_mover_rs in 203 seconds [~ 64 test (7.862407862407863%) started, 750 in queue, 32 running] Running Test swm_rna_base_pair_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_base_pair_constraints/command.sh Finished add_helix_sequence_constraints_advanced_setup in 211 seconds [~ 65 test (7.985257985257985%) started, 749 in queue, 32 running] Running Test rnp_ddg_relax_command_2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_command_2/command.sh Finished nonideal_rtmin in 212 seconds [~ 66 test (8.108108108108109%) started, 748 in queue, 32 running] Running Test test1_benchmark ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test1_benchmark/command.sh Finished ddG_sym in 214 seconds [~ 67 test (8.230958230958231%) started, 747 in queue, 32 running] Running Test ppi_v3_suiteF ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteF/command.sh Finished crosslinkermover_octahedral in 222 seconds [~ 68 test (8.353808353808354%) started, 746 in queue, 32 running] Running Test glycan_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_relax/command.sh Finished mp_relax_w_ligand in 226 seconds [~ 69 test (8.476658476658477%) started, 745 in queue, 32 running] Running Test docking_ensemble_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_ensemble_prepack/command.sh Finished ga_ligand_dock in 230 seconds [~ 70 test (8.5995085995086%) started, 744 in queue, 32 running] Running Test simple_cycpep_predict_trigonal_pyramidal_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_pyramidal_metal/command.sh Finished glycan_tree_relax in 241 seconds [~ 71 test (8.722358722358722%) started, 743 in queue, 32 running] No correct command.sh file found for esm_model_perplexity. Skipping. Running Test auto-drrafter_setup_run_R3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R3/command.sh Finished glycopeptidedocking_diglyco_long in 244 seconds [~ 73 test (8.968058968058967%) started, 741 in queue, 32 running] Running Test antibody_designer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer/command.sh Finished add_helix_sequence_constraints in 249 seconds [~ 74 test (9.090909090909092%) started, 740 in queue, 32 running] Running Test rna_denovo_dna_bridge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_dna_bridge/command.sh Finished bundlegridsampler_composition_energy in 251 seconds [~ 75 test (9.213759213759214%) started, 739 in queue, 32 running] Running Test count_cycpep_sequences ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/count_cycpep_sequences/command.sh Finished remodel in 254 seconds [~ 76 test (9.336609336609337%) started, 738 in queue, 32 running] Running Test rnp_ddg_calc_mut ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_mut/command.sh Finished cyclization in 258 seconds [~ 77 test (9.45945945945946%) started, 737 in queue, 32 running] Running Test helical_bundle_predict_psipred_with_helix_globals ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.sh Finished fast_relax_scripts in 262 seconds [~ 78 test (9.582309582309582%) started, 736 in queue, 32 running] Running Test simple_metrics_per_residue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_per_residue/command.sh Finished dgdp_aio in 265 seconds [~ 79 test (9.705159705159705%) started, 735 in queue, 32 running] Running Test composition_energy_layers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/composition_energy_layers/command.sh Finished antibody_H3 in 268 seconds [~ 80 test (9.828009828009828%) started, 734 in queue, 32 running] Running Test glycopeptidedocking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycopeptidedocking/command.sh Finished ddG_of_mutation in 269 seconds [~ 81 test (9.95085995085995%) started, 733 in queue, 32 running] Running Test helical_bundle_predict_psipred ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.sh Finished swm_dna_bridge in 128 seconds [~ 82 test (10.073710073710073%) started, 732 in queue, 32 running] Running Test SnugDock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SnugDock/command.sh Finished auto-drrafter_setup_run_R2 in 291 seconds [~ 83 test (10.196560196560197%) started, 731 in queue, 32 running] Running Test swm_dna_loop ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_dna_loop/command.sh Finished flexpepdock in 137 seconds [~ 84 test (10.31941031941032%) started, 730 in queue, 32 running] Running Test rosetta_scripts_loops ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_loops/command.sh Finished swm_rna_srl_triplet in 142 seconds [~ 85 test (10.442260442260443%) started, 729 in queue, 32 running] Running Test antibody_designer_xml ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer_xml/command.sh Finished swa_protein_CCDclose in 130 seconds [~ 86 test (10.565110565110565%) started, 728 in queue, 32 running] Running Test hbnet_asymm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_asymm/command.sh Finished ddG_ensemble in 130 seconds [~ 87 test (10.687960687960688%) started, 727 in queue, 32 running] Running Test voids_penalty_energy_design_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/voids_penalty_energy_design_symmetry/command.sh Finished simple_cycpep_predict_square_pyramidal_metal in 327 seconds [~ 88 test (10.81081081081081%) started, 726 in queue, 32 running] Running Test hydrate_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hydrate_relax/command.sh Finished job_definition_script_vars in 130 seconds [~ 89 test (10.933660933660933%) started, 725 in queue, 32 running] Running Test hbnet_energy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy/command.sh Finished coupled_moves in 132 seconds [~ 90 test (11.056511056511056%) started, 724 in queue, 32 running] Running Test docking_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_ensemble/command.sh Finished ga_ligand_dock_macrocycle in 139 seconds [~ 91 test (11.17936117936118%) started, 723 in queue, 32 running] Running Test crosslinkermover_square_pyramidal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_pyramidal/command.sh Finished rnp_ddg_relax_command_2 in 120 seconds [~ 92 test (11.302211302211303%) started, 722 in queue, 32 running] Running Test bundlegridsampler_copy_pitch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_copy_pitch/command.sh Finished dgdp_script in 334 seconds [~ 93 test (11.425061425061426%) started, 721 in queue, 32 running] Running Test dna_interface_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dna_interface_design/command.sh Finished test1_benchmark in 122 seconds [~ 94 test (11.547911547911548%) started, 720 in queue, 32 running] Running Test crosslinkermover_1_4_bbmb_s2_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_s2_symm/command.sh Finished swm_rna_base_pair_constraints in 132 seconds [~ 95 test (11.67076167076167%) started, 719 in queue, 32 running] Running Test crosslinkermover_tetrahedral_metal_d2_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_d2_symmetry/command.sh Finished simple_cycpep_predict_trigonal_pyramidal_metal in 106 seconds [~ 96 test (11.793611793611793%) started, 718 in queue, 32 running] Running Test vip ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/vip/command.sh Finished validate_database in 145 seconds [~ 97 test (11.916461916461916%) started, 717 in queue, 32 running] Running Test swa_rna_gagu_09_sample_virtual_ribose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_09_sample_virtual_ribose/command.sh Finished glycan_relax in 119 seconds [~ 98 test (12.039312039312039%) started, 716 in queue, 32 running] Running Test fiber_diffraction_fad ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fiber_diffraction_fad/command.sh Finished ppi_v3_suiteF in 128 seconds [~ 99 test (12.162162162162161%) started, 715 in queue, 32 running] Running Test supercharge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/supercharge/command.sh sed: 1: "/Volumes/scratch/b3.w/r ...": bad flag in substitute command: 'o' Finished database_md5 in 350 seconds [~ 100 test (12.285012285012286%) started, 714 in queue, 32 running] Running Test molfile_to_params_polymer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/molfile_to_params_polymer/command.sh Finished docking_ensemble_prepack in 126 seconds [~ 101 test (12.407862407862408%) started, 713 in queue, 32 running] Running Test PolarDesign2019 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PolarDesign2019/command.sh Finished auto-drrafter_setup_run_R3 in 120 seconds [~ 102 test (12.530712530712531%) started, 712 in queue, 32 running] Running Test simple_glycosylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_glycosylation/command.sh Finished antibody_designer in 119 seconds [~ 103 test (12.653562653562654%) started, 711 in queue, 32 running] Running Test jd2test_mmCIFin_PDBout ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_mmCIFin_PDBout/command.sh Finished rnp_ddg_calc_mut in 109 seconds [~ 104 test (12.776412776412776%) started, 710 in queue, 32 running] Running Test jd2test_mmCIFIO ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_mmCIFIO/command.sh Finished rna_denovo_dna_bridge in 116 seconds [~ 105 test (12.899262899262899%) started, 709 in queue, 32 running] Running Test helical_bundle_predict ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict/command.sh Finished count_cycpep_sequences in 116 seconds [~ 106 test (13.022113022113022%) started, 708 in queue, 32 running] Running Test crosslinkermover_square_planar ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_planar/command.sh Finished helical_bundle_predict_psipred_with_helix_globals in 115 seconds [~ 107 test (13.144963144963144%) started, 707 in queue, 32 running] Running Test bundlegridsampler_composition_energy_fract_range ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_composition_energy_fract_range/command.sh Finished composition_energy_layers in 115 seconds [~ 108 test (13.267813267813267%) started, 706 in queue, 32 running] Finished helical_bundle_predict_psipred in 111 seconds [~ 108 test (13.267813267813267%) started, 706 in queue, 31 running] Running Test LoopAnalyzer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LoopAnalyzer/command.sh Running Test inverse_rotamer_remodel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/inverse_rotamer_remodel/command.sh Finished glycopeptidedocking in 113 seconds [~ 110 test (13.513513513513514%) started, 704 in queue, 32 running] Running Test relax_w_allatom_cst ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/relax_w_allatom_cst/command.sh Finished simple_metrics_per_residue in 120 seconds [~ 111 test (13.636363636363637%) started, 703 in queue, 32 running] Running Test helical_bundle_predict_skipping_residues ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.sh Finished SnugDock in 106 seconds [~ 112 test (13.75921375921376%) started, 702 in queue, 32 running] Running Test hbnet_energy_rosettascripts_linear ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy_rosettascripts_linear/command.sh Finished swm_dna_loop in 112 seconds [~ 113 test (13.882063882063882%) started, 701 in queue, 32 running] Running Test d_workflow ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/d_workflow/command.sh Finished rosetta_scripts_loops in 104 seconds [~ 114 test (14.004914004914005%) started, 700 in queue, 32 running] Running Test control_flow_rs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/control_flow_rs/command.sh Finished voids_penalty_energy_design_symmetry in 99 seconds [~ 115 test (14.127764127764127%) started, 699 in queue, 32 running] Running Test simple_metrics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics/command.sh Finished antibody_designer_xml in 108 seconds [~ 116 test (14.25061425061425%) started, 698 in queue, 32 running] Running Test crosslinkermover_tma_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tma_symm/command.sh Finished hbnet_asymm in 103 seconds [~ 117 test (14.373464373464374%) started, 697 in queue, 32 running] Running Test rna_denovo_base_pair_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_base_pair_constraints/command.sh Finished hydrate_relax in 103 seconds [~ 118 test (14.496314496314497%) started, 696 in queue, 32 running] Running Test hotspot_hashing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_hashing/command.sh Finished vip in 97 seconds [~ 119 test (14.61916461916462%) started, 695 in queue, 32 running] Running Test helical_bundle_predict_sequence ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.sh Finished hbnet_energy in 105 seconds [~ 120 test (14.742014742014742%) started, 694 in queue, 32 running] Running Test design_glycans ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_glycans/command.sh Finished docking_ensemble in 105 seconds [~ 121 test (14.864864864864865%) started, 693 in queue, 32 running] Finished crosslinkermover_square_pyramidal in 104 seconds [~ 121 test (14.864864864864865%) started, 693 in queue, 31 running] Running Test ligand_water_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_water_docking/command.sh Running Test fiber_diffraction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fiber_diffraction/command.sh Finished bundlegridsampler_copy_pitch in 106 seconds [~ 123 test (15.11056511056511%) started, 691 in queue, 32 running] Running Test beta_strand_homodimer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/beta_strand_homodimer/command.sh Finished fiber_diffraction_fad in 96 seconds [~ 124 test (15.233415233415233%) started, 690 in queue, 32 running] Running Test polyaramid_test_trivial ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/polyaramid_test_trivial/command.sh Finished crosslinkermover_1_4_bbmb_s2_symm in 104 seconds [~ 125 test (15.356265356265355%) started, 689 in queue, 32 running] Running Test crosslinkermover_1_4_bbmb_asymm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_asymm/command.sh Finished supercharge in 96 seconds [~ 126 test (15.47911547911548%) started, 688 in queue, 32 running] Running Test membrane_relax_hbond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_relax_hbond/command.sh Finished crosslinkermover_tetrahedral_metal_d2_symmetry in 104 seconds [~ 127 test (15.601965601965603%) started, 687 in queue, 32 running] Running Test mr_protocols ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mr_protocols/command.sh Finished swa_rna_gagu_09_sample_virtual_ribose in 99 seconds [~ 128 test (15.724815724815725%) started, 686 in queue, 32 running] Running Test membrane_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_relax/command.sh Finished dna_interface_design in 106 seconds [~ 129 test (15.847665847665848%) started, 685 in queue, 32 running] Running Test simple_cycpep_predict_cartesian ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cartesian/command.sh Finished molfile_to_params_polymer in 97 seconds [~ 130 test (15.97051597051597%) started, 684 in queue, 32 running] Running Test AlterSpecDisruption ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AlterSpecDisruption/command.sh Finished PolarDesign2019 in 99 seconds [~ 131 test (16.093366093366093%) started, 683 in queue, 32 running] Running Test mp_domain_assembly_FtsQ ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_domain_assembly_FtsQ/command.sh Finished simple_glycosylation in 91 seconds [~ 132 test (16.216216216216218%) started, 682 in queue, 32 running] Running Test glycomutagenesis ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycomutagenesis/command.sh Finished jd2test_mmCIFin_PDBout in 98 seconds [~ 133 test (16.33906633906634%) started, 681 in queue, 32 running] Running Test backrub ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub/command.sh Finished jd2test_mmCIFIO in 98 seconds [~ 134 test (16.461916461916463%) started, 680 in queue, 32 running] Running Test autoNOE_rosetta ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/autoNOE_rosetta/command.sh Finished helical_bundle_predict in 96 seconds [~ 135 test (16.584766584766584%) started, 679 in queue, 32 running] Running Test antibody_H3_camelid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_H3_camelid/command.sh Finished crosslinkermover_square_planar in 98 seconds [~ 136 test (16.707616707616708%) started, 678 in queue, 32 running] Running Test simple_cycpep_predict ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict/command.sh Finished inverse_rotamer_remodel in 90 seconds [~ 137 test (16.83046683046683%) started, 677 in queue, 32 running] Running Test pertmin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pertmin/command.sh Finished relax_w_allatom_cst in 89 seconds [~ 138 test (16.953316953316953%) started, 676 in queue, 32 running] Running Test crosslinkermover_tetrahedral_metal_c2_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_c2_symmetry/command.sh Finished LoopAnalyzer in 92 seconds [~ 139 test (17.076167076167078%) started, 675 in queue, 32 running] Running Test rs_loophash ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rs_loophash/command.sh Finished bundlegridsampler_composition_energy_fract_range in 99 seconds [~ 140 test (17.1990171990172%) started, 674 in queue, 32 running] Running Test rnp_ddg_calc_wt ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_wt/command.sh Finished helical_bundle_predict_skipping_residues in 93 seconds [~ 141 test (17.321867321867323%) started, 673 in queue, 32 running] Running Test hybridization ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hybridization/command.sh *** Test mp_f19_relax exceeded the timeout=480 and will be killed! [2025-03-18 19:44:05.321178] Finished mp_f19_relax in 480 seconds [~ 142 test (17.444717444717444%) started, 672 in queue, 32 running] Running Test hts_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hts_io/command.sh Finished hbnet_energy_rosettascripts_linear in 94 seconds [~ 143 test (17.56756756756757%) started, 671 in queue, 32 running] Running Test swa_protein_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_prepack/command.sh Finished d_workflow in 90 seconds [~ 144 test (17.69041769041769%) started, 670 in queue, 32 running] Running Test swa_protein_loop_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_loop_sampler/command.sh Finished control_flow_rs in 96 seconds [~ 145 test (17.813267813267814%) started, 669 in queue, 32 running] Running Test crosslinkermover_square_planar_d2_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_planar_d2_symm/command.sh Finished mr_protocols in 79 seconds [~ 146 test (17.936117936117935%) started, 668 in queue, 32 running] Running Test simple_cycpep_predict_anglelength ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_anglelength/command.sh Finished simple_metrics in 92 seconds [~ 147 test (18.05896805896806%) started, 667 in queue, 32 running] Running Test rosetta_scripts_jd3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_jd3/command.sh Finished ligand_water_docking in 85 seconds [~ 148 test (18.181818181818183%) started, 666 in queue, 32 running] Running Test ligand_database_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_database_io/command.sh Finished crosslinkermover_tma_symm in 94 seconds [~ 149 test (18.304668304668304%) started, 665 in queue, 32 running] Running Test simple_cycpep_predict_setting ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_setting/command.sh Finished rna_denovo_base_pair_constraints in 93 seconds [~ 150 test (18.42751842751843%) started, 664 in queue, 32 running] Running Test netcharge_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/netcharge_design/command.sh Finished polyaramid_test_trivial in 84 seconds [~ 151 test (18.55036855036855%) started, 663 in queue, 32 running] Running Test fast_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fast_relax/command.sh Finished hotspot_hashing in 93 seconds [~ 152 test (18.673218673218674%) started, 662 in queue, 32 running] Finished simple_cycpep_predict_cartesian in 83 seconds [~ 152 test (18.673218673218674%) started, 662 in queue, 31 running] Running Test pmut_scan ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pmut_scan/command.sh Running Test hbnet ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet/command.sh Finished membrane_relax in 85 seconds [~ 154 test (18.91891891891892%) started, 660 in queue, 32 running] Running Test simple_cycpep_predict_tetrahedral_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal/command.sh Finished helical_bundle_predict_sequence in 92 seconds [~ 155 test (19.04176904176904%) started, 659 in queue, 32 running] Running Test simple_cycpep_predict_angle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_angle/command.sh Finished fiber_diffraction in 91 seconds [~ 156 test (19.164619164619165%) started, 658 in queue, 32 running] Running Test remodel_disulfides_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_disulfides_rosettascripts/command.sh Finished membrane_relax_hbond in 87 seconds [~ 157 test (19.28746928746929%) started, 657 in queue, 32 running] Running Test mirror_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mirror_symm/command.sh Finished crosslinkermover_1_4_bbmb_asymm in 87 seconds [~ 158 test (19.41031941031941%) started, 656 in queue, 32 running] Running Test bridge_chains ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bridge_chains/command.sh Finished design_glycans in 93 seconds [~ 159 test (19.533169533169534%) started, 655 in queue, 32 running] Finished beta_strand_homodimer in 89 seconds [~ 159 test (19.533169533169534%) started, 655 in queue, 31 running] Running Test swa_rna_erraser ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_erraser/command.sh Running Test rna_denovo_fragment_homology_exclusion ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_fragment_homology_exclusion/command.sh Finished AlterSpecDisruption in 82 seconds [~ 161 test (19.77886977886978%) started, 653 in queue, 32 running] Running Test perturb_helical_bundle_copying_pitch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_copying_pitch/command.sh Finished mp_domain_assembly_FtsQ in 80 seconds [~ 162 test (19.9017199017199%) started, 652 in queue, 32 running] Running Test batch_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/batch_relax/command.sh Finished glycomutagenesis in 81 seconds [~ 163 test (20.024570024570025%) started, 651 in queue, 32 running] Running Test swm_l_rna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_l_rna/command.sh Finished backrub in 80 seconds [~ 164 test (20.147420147420146%) started, 650 in queue, 32 running] Running Test rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/command.sh Finished autoNOE_rosetta in 82 seconds [~ 165 test (20.27027027027027%) started, 649 in queue, 32 running] Finished antibody_H3_camelid in 82 seconds [~ 165 test (20.27027027027027%) started, 649 in queue, 31 running] Running Test seed_ensemble_JD2_JI ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/seed_ensemble_JD2_JI/command.sh Running Test symm_disulfidize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symm_disulfidize/command.sh Finished simple_cycpep_predict in 81 seconds [~ 167 test (20.515970515970515%) started, 647 in queue, 32 running] Finished hybridization in 71 seconds [~ 167 test (20.515970515970515%) started, 647 in queue, 31 running] Running Test simple_cycpep_predict_trigonal_planar_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_planar_metal/command.sh Running Test ligand_dock_script ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_script/command.sh Finished rnp_ddg_calc_wt in 74 seconds [~ 169 test (20.76167076167076%) started, 645 in queue, 32 running] Running Test simple_cycpep_predict_tbmb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tbmb/command.sh Finished crosslinkermover_tetrahedral_metal_c2_symmetry in 80 seconds [~ 170 test (20.884520884520885%) started, 644 in queue, 32 running] Finished rs_loophash in 78 seconds [~ 170 test (20.884520884520885%) started, 644 in queue, 31 running] Running Test mp_dock_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_ensemble/command.sh Running Test farnesyl ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/farnesyl/command.sh Finished pertmin in 81 seconds [~ 172 test (21.13022113022113%) started, 642 in queue, 32 running] Running Test range_relax_w_cst ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/range_relax_w_cst/command.sh Finished hts_io in 76 seconds [~ 173 test (21.25307125307125%) started, 641 in queue, 32 running] Running Test motif_dna_packer_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_dna_packer_design/command.sh Finished swa_protein_prepack in 75 seconds [~ 174 test (21.375921375921376%) started, 640 in queue, 32 running] Running Test crosslinkermover_octahedral_s2_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_octahedral_s2_symm/command.sh Finished swa_protein_loop_sampler in 74 seconds [~ 175 test (21.4987714987715%) started, 639 in queue, 32 running] Running Test KIC_with_fragments ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_with_fragments/command.sh Finished crosslinkermover_square_planar_d2_symm in 75 seconds [~ 176 test (21.62162162162162%) started, 638 in queue, 32 running] Running Test test_degreaser ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_degreaser/command.sh Finished simple_cycpep_predict_setting in 66 seconds [~ 177 test (21.744471744471745%) started, 637 in queue, 32 running] Running Test repeat_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_relax/command.sh Finished simple_cycpep_predict_tetrahedral_metal in 63 seconds [~ 178 test (21.867321867321866%) started, 636 in queue, 32 running] Running Test remodel_helical_repeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_helical_repeat/command.sh Finished hbnet in 65 seconds [~ 179 test (21.99017199017199%) started, 635 in queue, 32 running] Running Test next_generation_KIC ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/next_generation_KIC/command.sh Finished bridge_chains in 63 seconds [~ 180 test (22.11302211302211%) started, 634 in queue, 32 running] Running Test splice_out_H3_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_longer/command.sh Finished rosetta_scripts_jd3 in 71 seconds [~ 181 test (22.235872235872236%) started, 633 in queue, 32 running] Running Test simple_cycpep_predict_tma ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tma/command.sh Finished ligand_database_io in 72 seconds [~ 182 test (22.35872235872236%) started, 632 in queue, 32 running] Running Test rna_puzzle12_P5P6P7_DMS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle12_P5P6P7_DMS/command.sh Finished perturb_helical_bundle_copying_pitch in 62 seconds [~ 183 test (22.48157248157248%) started, 631 in queue, 32 running] Running Test docking_local_refine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_local_refine/command.sh Finished netcharge_design in 70 seconds [~ 184 test (22.604422604422606%) started, 630 in queue, 32 running] Running Test rna_denovo_symm_hack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_symm_hack/command.sh Finished simple_cycpep_predict_anglelength in 74 seconds [~ 185 test (22.727272727272727%) started, 629 in queue, 32 running] Running Test cycpep_rigid_body_permutation_mover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_rigid_body_permutation_mover/command.sh Finished rna_denovo_fragment_homology_exclusion in 66 seconds [~ 186 test (22.85012285012285%) started, 628 in queue, 32 running] Running Test zinc_heterodimer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_heterodimer/command.sh Finished fast_relax in 71 seconds [~ 187 test (22.972972972972972%) started, 627 in queue, 32 running] Finished simple_cycpep_predict_angle in 68 seconds [~ 187 test (22.972972972972972%) started, 627 in queue, 31 running] Running Test sdf_reader ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sdf_reader/command.sh Running Test crankshaft_flip ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crankshaft_flip/command.sh Finished pmut_scan in 70 seconds [~ 189 test (23.218673218673217%) started, 625 in queue, 32 running] Running Test AlignPDBInfoToSequences ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AlignPDBInfoToSequences/command.sh Finished swa_rna_erraser in 67 seconds [~ 190 test (23.34152334152334%) started, 624 in queue, 32 running] Running Test ga_ligand_dock_amino_acid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock_amino_acid/command.sh Finished mirror_symm in 68 seconds [~ 191 test (23.464373464373466%) started, 623 in queue, 32 running] Running Test simple_cycpep_predict_octahedral_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_octahedral_metal/command.sh Finished remodel_disulfides_rosettascripts in 69 seconds [~ 192 test (23.587223587223587%) started, 622 in queue, 32 running] Running Test mp_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_relax/command.sh Finished simple_cycpep_predict_trigonal_planar_metal in 49 seconds [~ 193 test (23.71007371007371%) started, 621 in queue, 32 running] Running Test ppi_v3_suiteB ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteB/command.sh Finished batch_relax in 67 seconds [~ 194 test (23.832923832923832%) started, 620 in queue, 32 running] Running Test mp_find_interface ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_find_interface/command.sh Finished swm_l_rna in 66 seconds [~ 195 test (23.955773955773957%) started, 619 in queue, 32 running] Running Test hotspot_graft ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_graft/command.sh Finished simple_cycpep_predict_tbmb in 56 seconds [~ 196 test (24.078624078624077%) started, 618 in queue, 32 running] Running Test fixbb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fixbb/command.sh Finished rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation in 65 seconds [~ 197 test (24.201474201474202%) started, 617 in queue, 32 running] Running Test remodel_disulfides ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_disulfides/command.sh Finished symm_disulfidize in 64 seconds [~ 198 test (24.324324324324323%) started, 616 in queue, 32 running] Running Test hbs_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbs_design/command.sh Finished seed_ensemble_JD2_JI in 64 seconds [~ 199 test (24.447174447174447%) started, 615 in queue, 32 running] Running Test disulfidize_beta_cys ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/disulfidize_beta_cys/command.sh Finished mp_dock_ensemble in 58 seconds [~ 200 test (24.57002457002457%) started, 614 in queue, 32 running] Running Test buried_unsat_voids_hbnet_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design/command.sh Finished ligand_dock_script in 63 seconds [~ 201 test (24.692874692874692%) started, 613 in queue, 32 running] Running Test bundlegridsampler_epsilon ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_epsilon/command.sh Finished range_relax_w_cst in 60 seconds [~ 202 test (24.815724815724817%) started, 612 in queue, 32 running] Running Test TryDisulfPermutations ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/TryDisulfPermutations/command.sh Finished farnesyl in 62 seconds [~ 203 test (24.938574938574938%) started, 611 in queue, 32 running] Running Test swa_protein_combine_loops ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_combine_loops/command.sh Finished motif_dna_packer_design in 61 seconds [~ 204 test (25.061425061425062%) started, 610 in queue, 32 running] Running Test mp_symdock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_symdock/command.sh Finished crosslinkermover_octahedral_s2_symm in 60 seconds [~ 205 test (25.184275184275183%) started, 609 in queue, 32 running] Running Test enzdes ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzdes/command.sh Finished KIC_with_fragments in 59 seconds [~ 206 test (25.307125307125308%) started, 608 in queue, 32 running] Running Test entropy_correction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/entropy_correction/command.sh Finished simple_cycpep_predict_tma in 44 seconds [~ 207 test (25.42997542997543%) started, 607 in queue, 32 running] Running Test bundlereporter_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlereporter_filter/command.sh Finished test_degreaser in 57 seconds [~ 208 test (25.552825552825553%) started, 606 in queue, 32 running] Running Test secondary_structure_output ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/secondary_structure_output/command.sh Finished repeat_relax in 58 seconds [~ 209 test (25.675675675675677%) started, 605 in queue, 32 running] Running Test rna_denovo_new_FT_RNP_2prot_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_RNP_2prot_dens/command.sh Finished simple_cycpep_predict_octahedral_metal in 54 seconds [~ 210 test (25.798525798525798%) started, 604 in queue, 32 running] Running Test mp_domain_assembly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_domain_assembly/command.sh Finished splice_out_H3_longer in 58 seconds [~ 211 test (25.921375921375923%) started, 603 in queue, 32 running] Running Test generate_6Dloopclose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/generate_6Dloopclose/command.sh Finished remodel_helical_repeat in 60 seconds [~ 212 test (26.044226044226043%) started, 602 in queue, 32 running] Running Test explicit_membrane ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/explicit_membrane/command.sh Finished rna_denovo_symm_hack in 56 seconds [~ 213 test (26.167076167076168%) started, 601 in queue, 32 running] Finished ga_ligand_dock_amino_acid in 54 seconds [~ 213 test (26.167076167076168%) started, 601 in queue, 31 running] Running Test docking_distance_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_distance_constraints/command.sh Running Test UBQ_E2_thioester_extra_bodies ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester_extra_bodies/command.sh Finished mp_relax in 54 seconds [~ 215 test (26.412776412776413%) started, 599 in queue, 32 running] Running Test simple_cycpep_predict_bondangle_bondlength ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.sh Finished zinc_heterodimer in 56 seconds [~ 216 test (26.535626535626534%) started, 598 in queue, 32 running] Finished ppi_v3_suiteB in 54 seconds [~ 216 test (26.535626535626534%) started, 598 in queue, 31 running] Running Test mhc_epitope ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mhc_epitope/command.sh Running Test small_molecule_lattice_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/small_molecule_lattice_dock/command.sh Finished next_generation_KIC in 61 seconds [~ 218 test (26.781326781326783%) started, 596 in queue, 32 running] Running Test rna_denovo_RNP_refine_native ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_RNP_refine_native/command.sh Finished crankshaft_flip in 57 seconds [~ 219 test (26.904176904176904%) started, 595 in queue, 32 running] Running Test oop_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_design/command.sh Finished rna_puzzle12_P5P6P7_DMS in 59 seconds [~ 220 test (27.027027027027028%) started, 594 in queue, 32 running] Finished cycpep_rigid_body_permutation_mover in 58 seconds [~ 220 test (27.027027027027028%) started, 594 in queue, 31 running] Running Test make_symmdef_file ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_symmdef_file/command.sh Running Test crosslinkermover_1_4_bbmb_c2_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_c2_symmetry/command.sh Finished docking_local_refine in 59 seconds [~ 222 test (27.272727272727273%) started, 592 in queue, 32 running] Running Test SID_ERMS_prediction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SID_ERMS_prediction/command.sh No correct command.sh file found for trRosetta. Skipping. Finished sdf_reader in 58 seconds [~ 224 test (27.51842751842752%) started, 590 in queue, 32 running] Finished AlignPDBInfoToSequences in 57 seconds [~ 224 test (27.51842751842752%) started, 590 in queue, 31 running] Running Test rna_denovo_RNP_low_res ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_RNP_low_res/command.sh Running Test ppi_v3_suiteE ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteE/command.sh Finished mp_find_interface in 52 seconds [~ 226 test (27.764127764127764%) started, 588 in queue, 32 running] Running Test ppi_v3_suiteA ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteA/command.sh Finished hotspot_graft in 53 seconds [~ 227 test (27.88697788697789%) started, 587 in queue, 32 running] Running Test kinematic_looprelax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/kinematic_looprelax/command.sh Finished fixbb in 54 seconds [~ 228 test (28.00982800982801%) started, 586 in queue, 32 running] Running Test hbnet_energy_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy_symm/command.sh Finished remodel_disulfides in 53 seconds [~ 229 test (28.132678132678134%) started, 585 in queue, 32 running] Running Test evolution ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/evolution/command.sh Finished hbs_design in 53 seconds [~ 230 test (28.255528255528255%) started, 584 in queue, 32 running] Finished disulfidize_beta_cys in 52 seconds [~ 230 test (28.255528255528255%) started, 584 in queue, 31 running] Running Test UBQ_E2_thioester ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester/command.sh Running Test simple_cycpep_predict_terminal_disulfide_tails_2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.sh Finished buried_unsat_voids_hbnet_design in 53 seconds [~ 232 test (28.5012285012285%) started, 582 in queue, 32 running] Running Test homodimer_fnd_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/homodimer_fnd_ref2015_memb/command.sh Finished bundlegridsampler_epsilon in 53 seconds [~ 233 test (28.624078624078624%) started, 581 in queue, 32 running] Running Test docking_site_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_site_constraints/command.sh Finished TryDisulfPermutations in 52 seconds [~ 234 test (28.74692874692875%) started, 580 in queue, 32 running] Running Test cycpep_rdkit_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_rdkit_metric/command.sh Finished swa_protein_combine_loops in 52 seconds [~ 235 test (28.86977886977887%) started, 579 in queue, 32 running] Running Test cycpep_design_pipeline ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_design_pipeline/command.sh Finished mp_symdock in 51 seconds [~ 236 test (28.992628992628994%) started, 578 in queue, 32 running] Running Test rna_denovo_new_libs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_libs/command.sh Finished enzdes in 51 seconds [~ 237 test (29.115479115479115%) started, 577 in queue, 32 running] Running Test ligand_dock_cholesterol ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_cholesterol/command.sh Finished entropy_correction in 52 seconds [~ 238 test (29.23832923832924%) started, 576 in queue, 32 running] Running Test dock_glycans ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dock_glycans/command.sh Finished app_exception_handling in 685 seconds [~ 239 test (29.36117936117936%) started, 575 in queue, 32 running] Running Test AnchoredDesign ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchoredDesign/command.sh Finished secondary_structure_output in 49 seconds [~ 240 test (29.484029484029485%) started, 574 in queue, 32 running] Running Test symm_rotamer_boltzmann ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symm_rotamer_boltzmann/command.sh Finished bundlereporter_filter in 51 seconds [~ 241 test (29.606879606879605%) started, 573 in queue, 32 running] Running Test rna_farfar_block_stack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_block_stack/command.sh Finished rna_denovo_new_FT_RNP_2prot_dens in 49 seconds [~ 242 test (29.72972972972973%) started, 572 in queue, 32 running] Running Test bundlegridsampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler/command.sh Finished mhc_epitope in 46 seconds [~ 243 test (29.852579852579854%) started, 571 in queue, 32 running] Running Test rna_denovo_new_FT_2in_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_2in_dens/command.sh Finished mp_domain_assembly in 48 seconds [~ 244 test (29.975429975429975%) started, 570 in queue, 32 running] Running Test mixed_monte_carlo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mixed_monte_carlo/command.sh Finished rna_denovo_RNP_refine_native in 46 seconds [~ 245 test (30.0982800982801%) started, 569 in queue, 32 running] Running Test features_parallel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_parallel/command.sh Finished simple_cycpep_predict_bondangle_bondlength in 47 seconds [~ 246 test (30.22113022113022%) started, 568 in queue, 32 running] Finished make_symmdef_file in 46 seconds [~ 246 test (30.22113022113022%) started, 568 in queue, 31 running] Finished rna_denovo_RNP_low_res in 45 seconds [~ 246 test (30.22113022113022%) started, 568 in queue, 30 running] Running Test splice_out_L3_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_longer/command.sh Running Test splice_out_H1_H2_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_longer/command.sh Running Test simple_cycpep_predict_beta_thioether_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.sh Finished ppi_v3_suiteE in 45 seconds [~ 249 test (30.58968058968059%) started, 565 in queue, 32 running] Running Test rotamer_probability ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_probability/command.sh Finished generate_6Dloopclose in 49 seconds [~ 250 test (30.71253071253071%) started, 564 in queue, 32 running] Running Test iphold ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/iphold/command.sh Finished explicit_membrane in 49 seconds [~ 251 test (30.835380835380835%) started, 563 in queue, 32 running] Finished oop_design in 47 seconds [~ 251 test (30.835380835380835%) started, 563 in queue, 31 running] Finished ppi_v3_suiteA in 46 seconds [~ 251 test (30.835380835380835%) started, 563 in queue, 30 running] Running Test interaction_graph_summary_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/interaction_graph_summary_metric/command.sh Running Test genkic_sugars ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_sugars/command.sh Running Test farfar_mrna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/farfar_mrna/command.sh Finished docking_distance_constraints in 49 seconds [~ 254 test (31.203931203931205%) started, 560 in queue, 32 running] Running Test backrub_pilot ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub_pilot/command.sh Finished UBQ_E2_thioester_extra_bodies in 49 seconds [~ 255 test (31.326781326781326%) started, 559 in queue, 32 running] Finished SID_ERMS_prediction in 47 seconds [~ 255 test (31.326781326781326%) started, 559 in queue, 31 running] Running Test task_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/task_selector/command.sh Running Test netcharge_design_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/netcharge_design_symm/command.sh Finished crosslinkermover_1_4_bbmb_c2_symmetry in 47 seconds [~ 257 test (31.57248157248157%) started, 557 in queue, 32 running] Running Test swa_protein_build_at_Nterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_build_at_Nterminus/command.sh Finished kinematic_looprelax in 46 seconds [~ 258 test (31.695331695331696%) started, 556 in queue, 32 running] Running Test flexpepdock_abinitio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/flexpepdock_abinitio/command.sh Finished small_molecule_lattice_dock in 51 seconds [~ 259 test (31.818181818181817%) started, 555 in queue, 32 running] Running Test favor_native_residue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/favor_native_residue/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 40 seconds [~ 260 test (31.94103194103194%) started, 554 in queue, 32 running] Running Test constraints_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/constraints_metric/command.sh Finished hbnet_energy_symm in 45 seconds [~ 261 test (32.06388206388206%) started, 553 in queue, 32 running] Running Test bundlegridsampler_design_nstruct_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.sh Finished homodimer_fnd_ref2015_memb in 43 seconds [~ 262 test (32.186732186732186%) started, 552 in queue, 32 running] Running Test swm_rna_move_inside_helix_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_jump/command.sh Finished evolution in 46 seconds [~ 263 test (32.30958230958231%) started, 551 in queue, 32 running] Running Test splice_in_4loops_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_in_4loops_shorter/command.sh Finished UBQ_E2_thioester in 45 seconds [~ 264 test (32.432432432432435%) started, 550 in queue, 32 running] Running Test rs_flexbbmoves ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rs_flexbbmoves/command.sh Finished docking_site_constraints in 44 seconds [~ 265 test (32.55528255528255%) started, 549 in queue, 32 running] Running Test ppi_v3_suiteG ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteG/command.sh Finished cycpep_rdkit_metric in 45 seconds [~ 266 test (32.67813267813268%) started, 548 in queue, 32 running] Running Test ppi_v3_suiteD ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteD/command.sh Finished cycpep_design_pipeline in 45 seconds [~ 267 test (32.8009828009828%) started, 547 in queue, 32 running] Running Test pose_sewing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pose_sewing/command.sh Finished rna_denovo_new_libs in 43 seconds [~ 268 test (32.923832923832926%) started, 546 in queue, 32 running] Running Test ncaa_fixbb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ncaa_fixbb/command.sh Finished ligand_dock_cholesterol in 42 seconds [~ 269 test (33.04668304668305%) started, 545 in queue, 32 running] Running Test features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features/command.sh Finished dock_glycans in 44 seconds [~ 270 test (33.16953316953317%) started, 544 in queue, 32 running] Running Test cycpep_symmetry_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_symmetry_filter/command.sh Finished AnchoredDesign in 43 seconds [~ 271 test (33.29238329238329%) started, 543 in queue, 32 running] Running Test cleanAlignment ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cleanAlignment/command.sh Finished rna_farfar_block_stack in 42 seconds [~ 272 test (33.415233415233416%) started, 542 in queue, 32 running] Running Test balancedKIC ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/balancedKIC/command.sh Finished symm_rotamer_boltzmann in 43 seconds [~ 273 test (33.53808353808354%) started, 541 in queue, 32 running] Running Test simple_metrics_b_factor ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_b_factor/command.sh Finished mixed_monte_carlo in 39 seconds [~ 274 test (33.66093366093366%) started, 540 in queue, 32 running] Running Test simple_grafting_movers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_grafting_movers/command.sh Finished iphold in 38 seconds [~ 275 test (33.78378378378378%) started, 539 in queue, 32 running] Running Test hbnet_use_input_rot ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_use_input_rot/command.sh Finished rna_denovo_new_FT_2in_dens in 40 seconds [~ 276 test (33.90663390663391%) started, 538 in queue, 32 running] Running Test Enzrevert_xml ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/Enzrevert_xml/command.sh Finished splice_out_L3_longer in 40 seconds [~ 277 test (34.02948402948403%) started, 537 in queue, 32 running] Running Test swm_rna_singleloop ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_singleloop/command.sh Finished simple_cycpep_predict_beta_thioether_lariat in 40 seconds [~ 278 test (34.152334152334156%) started, 536 in queue, 32 running] Running Test rosie_ligand_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosie_ligand_docking/command.sh Finished interaction_graph_summary_metric in 39 seconds [~ 279 test (34.27518427518427%) started, 535 in queue, 32 running] Finished swa_protein_build_at_Nterminus in 38 seconds [~ 279 test (34.27518427518427%) started, 535 in queue, 31 running] Running Test ligand_dock_7cpa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_7cpa/command.sh Running Test kinemage_grid_output ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/kinemage_grid_output/command.sh Finished bundlegridsampler in 42 seconds [~ 281 test (34.52088452088452%) started, 533 in queue, 32 running] Running Test fold_from_loops ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_from_loops/command.sh Finished splice_out_H1_H2_longer in 40 seconds [~ 282 test (34.643734643734646%) started, 532 in queue, 32 running] Running Test doug_dock_design_min_mod2_cal_cal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/doug_dock_design_min_mod2_cal_cal/command.sh Finished genkic_sugars in 40 seconds [~ 283 test (34.766584766584764%) started, 531 in queue, 32 running] Finished task_selector in 39 seconds [~ 283 test (34.766584766584764%) started, 531 in queue, 31 running] Finished netcharge_design_symm in 39 seconds [~ 283 test (34.766584766584764%) started, 531 in queue, 30 running] No correct command.sh file found for trRosettaConstraintGenerator. Skipping. Running Test HDXEnergy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HDXEnergy/command.sh Running Test splice_out_L1_L2_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_longer/command.sh Running Test splice_in_4loops_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_in_4loops_longer/command.sh Finished features_parallel in 41 seconds [~ 287 test (35.25798525798526%) started, 527 in queue, 32 running] Running Test simple_cycpep_predict_1_4_bbmb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_1_4_bbmb/command.sh Finished rotamer_probability in 41 seconds [~ 288 test (35.38083538083538%) started, 526 in queue, 32 running] Running Test hydrate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hydrate/command.sh Finished favor_native_residue in 37 seconds [~ 289 test (35.5036855036855%) started, 525 in queue, 32 running] Running Test docking_full_protocol ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_full_protocol/command.sh Finished farfar_mrna in 41 seconds [~ 290 test (35.62653562653563%) started, 524 in queue, 32 running] Running Test dock_with_hotspot_place_simultaneously ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dock_with_hotspot_place_simultaneously/command.sh Finished backrub_pilot in 41 seconds [~ 291 test (35.74938574938575%) started, 523 in queue, 32 running] Running Test UBQ_Gp_LYX-Cterm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_Gp_LYX-Cterm/command.sh Finished flexpepdock_abinitio in 38 seconds [~ 292 test (35.87223587223587%) started, 522 in queue, 32 running] Running Test threefold_symm_peptide_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefold_symm_peptide_design/command.sh Finished constraints_metric in 39 seconds [~ 293 test (35.995085995085994%) started, 521 in queue, 32 running] Running Test splice_out_L3_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_same/command.sh Finished bundlegridsampler_design_nstruct_mode in 39 seconds [~ 294 test (36.11793611793612%) started, 520 in queue, 32 running] Running Test splice_out_H1_H2_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_same/command.sh Finished swm_rna_move_inside_helix_by_jump in 37 seconds [~ 295 test (36.24078624078624%) started, 519 in queue, 32 running] Running Test simple_hbondstoatom ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_hbondstoatom/command.sh Finished splice_in_4loops_shorter in 37 seconds [~ 296 test (36.36363636363637%) started, 518 in queue, 32 running] Running Test simple_cycpep_predict_thioether_cis_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_thioether_cis_sampling/command.sh Finished rs_flexbbmoves in 37 seconds [~ 297 test (36.486486486486484%) started, 517 in queue, 32 running] Running Test simple_cycpep_predict_symm_gly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_symm_gly/command.sh Finished ppi_v3_suiteG in 37 seconds [~ 298 test (36.60933660933661%) started, 516 in queue, 32 running] Running Test simple_cycpep_predict_cispro ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cispro/command.sh Finished pose_sewing in 36 seconds [~ 299 test (36.73218673218673%) started, 515 in queue, 32 running] Running Test rosetta_scripts_include ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_include/command.sh Finished ppi_v3_suiteD in 37 seconds [~ 300 test (36.85503685503686%) started, 514 in queue, 32 running] Running Test perturb_helical_bundle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle/command.sh Finished ncaa_fixbb in 37 seconds [~ 301 test (36.977886977886975%) started, 513 in queue, 32 running] Running Test match_1n9l ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_1n9l/command.sh Finished simple_metrics_b_factor in 21 seconds [~ 302 test (37.1007371007371%) started, 512 in queue, 32 running] Running Test genkic_lowmemory_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_lowmemory_mode/command.sh Finished features in 40 seconds [~ 303 test (37.223587223587224%) started, 511 in queue, 32 running] Running Test KIC_refine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_refine/command.sh Finished simple_grafting_movers in 20 seconds [~ 304 test (37.34643734643735%) started, 510 in queue, 32 running] Running Test InterfaceAnalyzer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer/command.sh Finished cycpep_symmetry_filter in 38 seconds [~ 305 test (37.46928746928747%) started, 509 in queue, 32 running] Running Test pocket_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_relax/command.sh Finished cleanAlignment in 38 seconds [~ 306 test (37.59213759213759%) started, 508 in queue, 32 running] Running Test multistage_rosetta_scripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/multistage_rosetta_scripts/command.sh Finished balancedKIC in 38 seconds [~ 307 test (37.714987714987714%) started, 507 in queue, 32 running] Running Test helical_bundle_nonideal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_nonideal/command.sh Finished simple_cycpep_predict_thioether_cis_sampling in 23 seconds [~ 308 test (37.83783783783784%) started, 506 in queue, 32 running] Running Test favor_coupling_tensor ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/favor_coupling_tensor/command.sh Finished hydrate in 33 seconds [~ 309 test (37.96068796068796%) started, 505 in queue, 32 running] Finished hbnet_use_input_rot in 36 seconds [~ 310 test (38.08353808353808%) started, 504 in queue, 32 running] Running Test KIC_vicinity ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_vicinity/command.sh Running Test torsion_restricted_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/torsion_restricted_sampling/command.sh Finished splice_out_L1_L2_longer in 35 seconds [~ 311 test (38.206388206388205%) started, 503 in queue, 32 running] Finished splice_in_4loops_longer in 35 seconds [~ 311 test (38.206388206388205%) started, 503 in queue, 31 running] Running Test sequence_profile_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_profile_constraints/command.sh Running Test score12_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score12_docking/command.sh Finished swm_rna_singleloop in 36 seconds [~ 313 test (38.452088452088454%) started, 501 in queue, 32 running] Finished rosie_ligand_docking in 36 seconds [~ 313 test (38.452088452088454%) started, 501 in queue, 31 running] Finished ligand_dock_7cpa in 35 seconds [~ 313 test (38.452088452088454%) started, 501 in queue, 30 running] Running Test place_simultaneously ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/place_simultaneously/command.sh Running Test bundlegridsampler_z1_offset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_z1_offset/command.sh Running Test bundlegridsampler_z0_offset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_z0_offset/command.sh Finished UBQ_Gp_LYX-Cterm in 34 seconds [~ 316 test (38.82063882063882%) started, 498 in queue, 32 running] Running Test auto-drrafter_final_results ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_final_results/command.sh Finished dock_with_hotspot_place_simultaneously in 34 seconds [~ 317 test (38.943488943488944%) started, 497 in queue, 32 running] Running Test symmetry_multicomponent ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetry_multicomponent/command.sh Finished fold_from_loops in 36 seconds [~ 318 test (39.06633906633907%) started, 496 in queue, 32 running] Finished HDXEnergy in 35 seconds [~ 318 test (39.06633906633907%) started, 496 in queue, 31 running] Finished simple_cycpep_predict_1_4_bbmb in 35 seconds [~ 318 test (39.06633906633907%) started, 496 in queue, 30 running] Running Test swm_protein_loop_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_loop_sampler/command.sh Running Test swm_beta_peptide_loop ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_beta_peptide_loop/command.sh Running Test splice_out_L1_L2_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_same/command.sh Finished threefold_symm_peptide_design in 34 seconds [~ 321 test (39.434889434889435%) started, 493 in queue, 32 running] Running Test simple_metric_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_filter/command.sh Finished kinemage_grid_output in 36 seconds [~ 322 test (39.55773955773956%) started, 492 in queue, 32 running] Running Test match_6cpa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_6cpa/command.sh Finished Enzrevert_xml in 37 seconds [~ 323 test (39.680589680589684%) started, 491 in queue, 32 running] Running Test ligand_motif_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_design/command.sh Finished doug_dock_design_min_mod2_cal_cal in 36 seconds [~ 324 test (39.8034398034398%) started, 490 in queue, 32 running] Finished docking_full_protocol in 35 seconds [~ 324 test (39.8034398034398%) started, 490 in queue, 31 running] Running Test density_refine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_refine/command.sh Running Test crosslinkermover_trigonal_pyramidal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal/command.sh Finished splice_out_L3_same in 34 seconds [~ 326 test (40.04914004914005%) started, 488 in queue, 32 running] Running Test cart_min_glycans ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cart_min_glycans/command.sh Finished splice_out_H1_H2_same in 34 seconds [~ 327 test (40.171990171990174%) started, 487 in queue, 32 running] Running Test backrub_interface_ddG ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub_interface_ddG/command.sh Finished simple_hbondstoatom in 34 seconds [~ 328 test (40.29484029484029%) started, 486 in queue, 32 running] Running Test loop_modeling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_modeling/command.sh Finished simple_cycpep_predict_symm_gly in 34 seconds [~ 329 test (40.417690417690416%) started, 485 in queue, 32 running] Running Test loop_grower_N_term_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_grower_N_term_symm/command.sh Finished simple_cycpep_predict_cispro in 34 seconds [~ 330 test (40.54054054054054%) started, 484 in queue, 32 running] Running Test jd2test_PDBin_mmCIFout ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout/command.sh Finished rosetta_scripts_include in 34 seconds [~ 331 test (40.663390663390665%) started, 483 in queue, 32 running] Running Test jd2test_PDBIO ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBIO/command.sh Finished perturb_helical_bundle in 34 seconds [~ 332 test (40.78624078624079%) started, 482 in queue, 32 running] Running Test inv_kin_lig_loop_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/inv_kin_lig_loop_design/command.sh Finished match_1n9l in 34 seconds [~ 333 test (40.90909090909091%) started, 481 in queue, 32 running] Running Test hbonds ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbonds/command.sh Finished genkic_lowmemory_mode in 34 seconds [~ 334 test (41.03194103194103%) started, 480 in queue, 32 running] Running Test design_w_custom_palette-NCAAs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-NCAAs/command.sh Finished KIC_refine in 34 seconds [~ 335 test (41.154791154791155%) started, 479 in queue, 32 running] Running Test crosslinkermover_trigonal_planar ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_planar/command.sh Finished InterfaceAnalyzer in 34 seconds [~ 336 test (41.27764127764128%) started, 478 in queue, 32 running] Running Test bin_initialization ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bin_initialization/command.sh Finished pocket_relax in 32 seconds [~ 337 test (41.4004914004914%) started, 477 in queue, 32 running] Running Test swm_general_polymer_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_general_polymer_sampler/command.sh Finished multistage_rosetta_scripts in 33 seconds [~ 338 test (41.52334152334152%) started, 476 in queue, 32 running] Running Test splice_out_L3_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_shorter/command.sh Finished helical_bundle_nonideal in 33 seconds [~ 339 test (41.646191646191646%) started, 475 in queue, 32 running] Running Test simple_metric_features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_features/command.sh Finished favor_coupling_tensor in 32 seconds [~ 340 test (41.76904176904177%) started, 474 in queue, 32 running] Running Test simple_glycosylation_alternate_AAs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_glycosylation_alternate_AAs/command.sh Finished simple_metric_filter in 27 seconds [~ 341 test (41.891891891891895%) started, 473 in queue, 32 running] Running Test simple_cycpep_predict_tetrahedral_metal_asp ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal_asp/command.sh Finished symmetry_multicomponent in 30 seconds [~ 342 test (42.01474201474201%) started, 472 in queue, 32 running] Running Test simple_cycpep_predict_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_design/command.sh Finished torsion_restricted_sampling in 32 seconds [~ 343 test (42.13759213759214%) started, 471 in queue, 32 running] Finished match_6cpa in 30 seconds [~ 343 test (42.13759213759214%) started, 471 in queue, 31 running] Running Test score_only_silence ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_only_silence/command.sh Running Test residue_energy_breakdown ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/residue_energy_breakdown/command.sh Finished KIC_vicinity in 32 seconds [~ 345 test (42.383292383292385%) started, 469 in queue, 32 running] Finished score12_docking in 32 seconds [~ 345 test (42.383292383292385%) started, 469 in queue, 31 running] Finished swm_beta_peptide_loop in 31 seconds [~ 345 test (42.383292383292385%) started, 469 in queue, 30 running] Finished density_refine in 30 seconds [~ 345 test (42.383292383292385%) started, 469 in queue, 29 running] Running Test pepspec ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pepspec/command.sh Running Test oligourea_predict ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oligourea_predict/command.sh Running Test multistage_rosetta_scripts_clustering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/multistage_rosetta_scripts_clustering/command.sh Running Test membrane_abinitio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_abinitio/command.sh Finished swm_protein_loop_sampler in 31 seconds [~ 349 test (42.874692874692876%) started, 465 in queue, 32 running] Running Test make_mainchain_potential ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential/command.sh Finished sequence_profile_constraints in 32 seconds [~ 350 test (42.997542997543%) started, 464 in queue, 32 running] Finished bundlegridsampler_z1_offset in 32 seconds [~ 350 test (42.997542997543%) started, 464 in queue, 31 running] Finished bundlegridsampler_z0_offset in 32 seconds [~ 350 test (42.997542997543%) started, 464 in queue, 30 running] Running Test jd2test_PDBin_mmCIFout_extra_data_separate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout_extra_data_separate/command.sh Running Test design_w_custom_palette-CAAs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-CAAs/command.sh Running Test carbohydrates ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/carbohydrates/command.sh Finished place_simultaneously in 32 seconds [~ 353 test (43.36609336609337%) started, 461 in queue, 32 running] Finished splice_out_L1_L2_same in 31 seconds [~ 353 test (43.36609336609337%) started, 461 in queue, 31 running] Running Test bundlegridsampler_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_design/command.sh Running Test RunSimpleMetric_b_factor_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RunSimpleMetric_b_factor_test/command.sh Finished ligand_motif_design in 31 seconds [~ 355 test (43.61179361179361%) started, 459 in queue, 32 running] Running Test tcrmodel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/tcrmodel/command.sh Finished auto-drrafter_final_results in 33 seconds [~ 356 test (43.73464373464373%) started, 458 in queue, 32 running] Finished crosslinkermover_trigonal_pyramidal in 32 seconds [~ 356 test (43.73464373464373%) started, 458 in queue, 31 running] Running Test splice_out_H1_H2_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_shorter/command.sh Running Test simple_metrics_in_protocols ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_in_protocols/command.sh Finished cart_min_glycans in 31 seconds [~ 358 test (43.98034398034398%) started, 456 in queue, 32 running] Running Test simple_metric_cache ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_cache/command.sh Finished loop_modeling in 30 seconds [~ 359 test (44.103194103194106%) started, 455 in queue, 32 running] Running Test rna_puzzle11_H2H3H4_run3_connectU40 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle11_H2H3H4_run3_connectU40/command.sh Finished loop_grower_N_term_symm in 29 seconds [~ 360 test (44.22604422604422%) started, 454 in queue, 32 running] Running Test rna_farfar_noncanonical_hairpin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_noncanonical_hairpin/command.sh Finished backrub_interface_ddG in 32 seconds [~ 361 test (44.34889434889435%) started, 453 in queue, 32 running] Running Test mm_params ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mm_params/command.sh Finished jd2test_PDBin_mmCIFout in 29 seconds [~ 362 test (44.47174447174447%) started, 452 in queue, 32 running] Running Test minimize_with_elec_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/minimize_with_elec_dens/command.sh Finished jd2test_PDBIO in 29 seconds [~ 363 test (44.5945945945946%) started, 451 in queue, 32 running] Running Test enumerative_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enumerative_sampling/command.sh Finished inv_kin_lig_loop_design in 30 seconds [~ 364 test (44.71744471744472%) started, 450 in queue, 32 running] Running Test centroid_from_fullatom ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/centroid_from_fullatom/command.sh Finished hbonds in 30 seconds [~ 365 test (44.84029484029484%) started, 449 in queue, 32 running] Running Test antibody_designer_camelid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer_camelid/command.sh Finished design_w_custom_palette-NCAAs in 31 seconds [~ 366 test (44.96314496314496%) started, 448 in queue, 32 running] Running Test AnchorFinder ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchorFinder/command.sh Finished crosslinkermover_trigonal_planar in 30 seconds [~ 367 test (45.08599508599509%) started, 447 in queue, 32 running] Running Test simple_cycpep_predict_thioether_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.sh Finished tcrmodel in 11 seconds [~ 368 test (45.20884520884521%) started, 446 in queue, 32 running] Running Test sasa_metric_options ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sasa_metric_options/command.sh Finished simple_cycpep_predict_tetrahedral_metal_asp in 18 seconds [~ 369 test (45.33169533169533%) started, 445 in queue, 32 running] Running Test motif_score_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_score_filter/command.sh Finished bin_initialization in 30 seconds [~ 370 test (45.45454545454545%) started, 444 in queue, 32 running] Running Test mhc_epitope_nmer_preload ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mhc_epitope_nmer_preload/command.sh Finished splice_out_L3_shorter in 28 seconds [~ 371 test (45.57739557739558%) started, 443 in queue, 32 running] Running Test mf_fixbb_des ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_fixbb_des/command.sh Finished swm_general_polymer_sampler in 33 seconds [~ 372 test (45.7002457002457%) started, 442 in queue, 32 running] Running Test glycan_anomers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_anomers/command.sh /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_features/command.sh: line 12: dump.sql: No such file or directory Finished simple_metric_features in 28 seconds [~ 373 test (45.82309582309583%) started, 441 in queue, 32 running] Running Test crosslinkermover_trigonal_pyramidal_c3_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal_c3_symm/command.sh Finished simple_glycosylation_alternate_AAs in 27 seconds [~ 374 test (45.945945945945944%) started, 440 in queue, 32 running] Running Test crosslinkermover_trigonal_planar_c3_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_planar_c3_symm/command.sh Finished simple_metrics_in_protocols in 24 seconds [~ 375 test (46.06879606879607%) started, 439 in queue, 32 running] Running Test bundlegridsampler_multirepeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_multirepeat/command.sh Finished simple_metric_cache in 25 seconds [~ 376 test (46.19164619164619%) started, 438 in queue, 32 running] Running Test UBQ_Gp_CYD-CYD ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_Gp_CYD-CYD/command.sh Finished carbohydrates in 27 seconds [~ 377 test (46.31449631449632%) started, 437 in queue, 32 running] Running Test LayerSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerSelector/command.sh Finished simple_cycpep_predict_design in 29 seconds [~ 378 test (46.437346437346434%) started, 436 in queue, 32 running] Finished score_only_silence in 28 seconds [~ 378 test (46.437346437346434%) started, 436 in queue, 31 running] Running Test splice_out_L1_L2_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_shorter/command.sh Running Test ncbb_packer_palette ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ncbb_packer_palette/command.sh Finished multistage_rosetta_scripts_clustering in 28 seconds [~ 380 test (46.68304668304668%) started, 434 in queue, 32 running] Running Test match_xml ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_xml/command.sh Finished oligourea_predict in 28 seconds [~ 381 test (46.80589680589681%) started, 433 in queue, 32 running] Running Test hbonds_sp2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbonds_sp2/command.sh Finished residue_energy_breakdown in 29 seconds [~ 382 test (46.92874692874693%) started, 432 in queue, 32 running] Finished make_mainchain_potential in 28 seconds [~ 382 test (46.92874692874693%) started, 432 in queue, 31 running] Running Test crosslinkermover_methyllanthionine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_methyllanthionine/command.sh Running Test add_constraints_to_current_conformation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_constraints_to_current_conformation/command.sh Finished pepspec in 29 seconds [~ 384 test (47.174447174447174%) started, 430 in queue, 32 running] Finished membrane_abinitio in 29 seconds [~ 384 test (47.174447174447174%) started, 430 in queue, 31 running] Running Test InterfaceAnalyzer_metrics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_metrics/command.sh Running Test AnchoredPDBCreator ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchoredPDBCreator/command.sh Finished jd2test_PDBin_mmCIFout_extra_data_separate in 29 seconds [~ 386 test (47.42014742014742%) started, 428 in queue, 32 running] Finished bundlegridsampler_design in 28 seconds [~ 386 test (47.42014742014742%) started, 428 in queue, 31 running] Running Test thermal_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/thermal_sampler/command.sh Running Test swa_protein_build_at_Cterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_build_at_Cterminus/command.sh Finished design_w_custom_palette-CAAs in 29 seconds [~ 388 test (47.665847665847664%) started, 426 in queue, 32 running] Running Test splice_out_H3_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_same/command.sh Finished RunSimpleMetric_b_factor_test in 29 seconds [~ 389 test (47.78869778869779%) started, 425 in queue, 32 running] Running Test rollmover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rollmover/command.sh Finished splice_out_H1_H2_shorter in 29 seconds [~ 390 test (47.91154791154791%) started, 424 in queue, 32 running] Running Test recon_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/recon_design/command.sh Finished rna_puzzle11_H2H3H4_run3_connectU40 in 27 seconds [~ 391 test (48.03439803439804%) started, 423 in queue, 32 running] Running Test metropolis_hastings ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metropolis_hastings/command.sh Finished mm_params in 27 seconds [~ 392 test (48.157248157248155%) started, 422 in queue, 32 running] Running Test ligand_dock_grid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_grid/command.sh Finished rna_farfar_noncanonical_hairpin in 28 seconds [~ 393 test (48.28009828009828%) started, 421 in queue, 32 running] Running Test density_denovo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_denovo/command.sh Finished minimize_with_elec_dens in 28 seconds [~ 394 test (48.402948402948404%) started, 420 in queue, 32 running] Running Test broker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/broker/command.sh Finished enumerative_sampling in 28 seconds [~ 395 test (48.52579852579853%) started, 419 in queue, 32 running] Running Test antibody_graft ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_graft/command.sh Finished antibody_designer_camelid in 27 seconds [~ 396 test (48.648648648648646%) started, 418 in queue, 32 running] Running Test UBQ_E2_thioester_two_ubiquitins ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester_two_ubiquitins/command.sh Finished centroid_from_fullatom in 28 seconds [~ 397 test (48.77149877149877%) started, 417 in queue, 32 running] Running Test ThreadingInputter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ThreadingInputter/command.sh Finished AnchorFinder in 27 seconds [~ 398 test (48.894348894348894%) started, 416 in queue, 32 running] Running Test thread_local_tracers_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/thread_local_tracers_check/command.sh Finished sasa_metric_options in 27 seconds [~ 399 test (49.01719901719902%) started, 415 in queue, 32 running] Running Test simple_cycpep_predict_square_planar_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_square_planar_metal/command.sh Finished motif_score_filter in 26 seconds [~ 400 test (49.14004914004914%) started, 414 in queue, 32 running] Running Test posttranslationalmod_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/posttranslationalmod_io/command.sh Finished mhc_epitope_nmer_preload in 27 seconds [~ 401 test (49.26289926289926%) started, 413 in queue, 32 running] Running Test perturb_helical_bundle_setting ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_setting/command.sh Finished simple_cycpep_predict_thioether_lariat in 33 seconds [~ 402 test (49.385749385749385%) started, 412 in queue, 32 running] Running Test oligourea_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oligourea_design/command.sh Finished mf_fixbb_des in 27 seconds [~ 403 test (49.50859950859951%) started, 411 in queue, 32 running] Running Test min_pack_min ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/min_pack_min/command.sh Finished glycan_anomers in 26 seconds [~ 404 test (49.631449631449634%) started, 410 in queue, 32 running] Running Test ReadResfile_with_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ReadResfile_with_selector/command.sh Finished crosslinkermover_trigonal_pyramidal_c3_symm in 27 seconds [~ 405 test (49.75429975429975%) started, 409 in queue, 32 running] Running Test LayerDesign ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerDesign/command.sh Finished crosslinkermover_trigonal_planar_c3_symm in 27 seconds [~ 406 test (49.877149877149876%) started, 408 in queue, 32 running] Running Test zinc_homodimer_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_homodimer_design/command.sh sed: 1: "threadlocal_tracers.txt": undefined label 'hreadlocal_tracers.txt' Finished thread_local_tracers_check in 13 seconds [~ 407 test (50.0%) started, 407 in queue, 32 running] Running Test startfrom_file ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/startfrom_file/command.sh Finished ncbb_packer_palette in 24 seconds [~ 408 test (50.122850122850124%) started, 406 in queue, 32 running] Running Test splice_out_H3_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_shorter/command.sh Finished bundlegridsampler_multirepeat in 26 seconds [~ 409 test (50.24570024570025%) started, 405 in queue, 32 running] Running Test simple_cycpep_predict_peptoid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_peptoid/command.sh Finished thermal_sampler in 24 seconds [~ 410 test (50.368550368550366%) started, 404 in queue, 32 running] Finished swa_protein_build_at_Cterminus in 24 seconds [~ 410 test (50.368550368550366%) started, 404 in queue, 31 running] Running Test repack_with_elec_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repack_with_elec_dens/command.sh Running Test pna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pna/command.sh Finished UBQ_Gp_CYD-CYD in 26 seconds [~ 412 test (50.614250614250615%) started, 402 in queue, 32 running] Running Test glycan_sequon_scanner ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_sequon_scanner/command.sh Finished add_constraints_to_current_conformation in 25 seconds [~ 413 test (50.73710073710074%) started, 401 in queue, 32 running] Running Test glycan_refinment ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_refinment/command.sh Finished LayerSelector in 26 seconds [~ 414 test (50.85995085995086%) started, 400 in queue, 32 running] Finished splice_out_L1_L2_shorter in 26 seconds [~ 414 test (50.85995085995086%) started, 400 in queue, 31 running] Finished match_xml in 26 seconds [~ 414 test (50.85995085995086%) started, 400 in queue, 30 running] Finished rollmover in 24 seconds [~ 414 test (50.85995085995086%) started, 400 in queue, 29 running] Finished recon_design in 24 seconds [~ 414 test (50.85995085995086%) started, 400 in queue, 28 running] Running Test enzscore_filter_metal_sym ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_metal_sym/command.sh Running Test enzscore_filter_dimetal_sym ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_dimetal_sym/command.sh Running Test coarse_rna_scoring ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coarse_rna_scoring/command.sh Running Test classic_relax_1a19 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/classic_relax_1a19/command.sh Running Test backbonegridsampler_nstruct_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.sh Finished hbonds_sp2 in 26 seconds [~ 419 test (51.47420147420147%) started, 395 in queue, 32 running] Running Test PeptideCyclizeMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PeptideCyclizeMover/command.sh Finished crosslinkermover_methyllanthionine in 26 seconds [~ 420 test (51.597051597051596%) started, 394 in queue, 32 running] Running Test test_computed_saxs_spectrum ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_computed_saxs_spectrum/command.sh Finished AnchoredPDBCreator in 26 seconds [~ 421 test (51.71990171990172%) started, 393 in queue, 32 running] Finished splice_out_H3_same in 25 seconds [~ 421 test (51.71990171990172%) started, 393 in queue, 31 running] Running Test swm_rna_checkpoint_partition ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_checkpoint_partition/command.sh Running Test swm_protein_move_inside_helix_by_bond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_move_inside_helix_by_bond/command.sh Finished InterfaceAnalyzer_metrics in 26 seconds [~ 423 test (51.96560196560196%) started, 391 in queue, 32 running] Finished metropolis_hastings in 25 seconds [~ 423 test (51.96560196560196%) started, 391 in queue, 31 running] Running Test simple_dna_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_dna_test/command.sh Running Test rosetta_scripts_hbond_options ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_hbond_options/command.sh Finished density_denovo in 24 seconds [~ 425 test (52.21130221130221%) started, 389 in queue, 32 running] Running Test ppk ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppk/command.sh Finished ligand_dock_grid in 25 seconds [~ 426 test (52.334152334152336%) started, 388 in queue, 32 running] Running Test mp_ligand_interface ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_ligand_interface/command.sh Finished broker in 24 seconds [~ 427 test (52.45700245700246%) started, 387 in queue, 32 running] Running Test genkic_rama_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_rama_filter/command.sh Finished antibody_graft in 25 seconds [~ 428 test (52.57985257985258%) started, 386 in queue, 32 running] Running Test fuzzy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fuzzy/command.sh Finished ThreadingInputter in 24 seconds [~ 429 test (52.7027027027027%) started, 385 in queue, 32 running] Running Test enzscore_filter_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_metal/command.sh Finished UBQ_E2_thioester_two_ubiquitins in 25 seconds [~ 430 test (52.825552825552826%) started, 384 in queue, 32 running] Running Test enzscore_filter_dimetal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_dimetal/command.sh Finished simple_cycpep_predict_square_planar_metal in 25 seconds [~ 431 test (52.94840294840295%) started, 383 in queue, 32 running] Finished posttranslationalmod_io in 24 seconds [~ 431 test (52.94840294840295%) started, 383 in queue, 31 running] Running Test ddG_scan ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_scan/command.sh Running Test crosslinkermover_tetrahedral_metal_asp ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_asp/command.sh Finished perturb_helical_bundle_setting in 23 seconds [~ 433 test (53.19410319410319%) started, 381 in queue, 32 running] Running Test crosslinkermover_lanthionine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_lanthionine/command.sh Finished oligourea_design in 23 seconds [~ 434 test (53.31695331695332%) started, 380 in queue, 32 running] Running Test backbonegridsampler_multiresidue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler_multiresidue/command.sh Finished min_pack_min in 23 seconds [~ 435 test (53.43980343980344%) started, 379 in queue, 32 running] Running Test symmetric_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetric_docking/command.sh Finished zinc_homodimer_design in 22 seconds [~ 436 test (53.562653562653566%) started, 378 in queue, 32 running] Running Test sim_cryo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sim_cryo/command.sh Finished ReadResfile_with_selector in 24 seconds [~ 437 test (53.68550368550368%) started, 377 in queue, 32 running] Running Test rosetta_scripts_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_setup/command.sh Finished LayerDesign in 24 seconds [~ 438 test (53.80835380835381%) started, 376 in queue, 32 running] Finished startfrom_file in 23 seconds [~ 438 test (53.80835380835381%) started, 376 in queue, 31 running] Running Test rna_denovo_base_pair_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_base_pair_setup/command.sh Running Test repeat_propagate_v3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate_v3/command.sh Finished splice_out_H3_shorter in 23 seconds [~ 440 test (54.054054054054056%) started, 374 in queue, 32 running] Running Test repeat_propagate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate/command.sh Finished simple_cycpep_predict_peptoid in 23 seconds [~ 441 test (54.17690417690417%) started, 373 in queue, 32 running] Running Test protocol_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/protocol_metric/command.sh Finished repack_with_elec_dens in 23 seconds [~ 442 test (54.2997542997543%) started, 372 in queue, 32 running] Running Test perturb_helical_bundle_z_offset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_z_offset/command.sh Finished glycan_sequon_scanner in 22 seconds [~ 443 test (54.42260442260442%) started, 371 in queue, 32 running] Finished glycan_refinment in 22 seconds [~ 443 test (54.42260442260442%) started, 371 in queue, 31 running] Running Test perturb_helical_bundle_epsilon ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_epsilon/command.sh Running Test metalloprotein_abrelax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metalloprotein_abrelax/command.sh Finished backbonegridsampler_nstruct_mode in 22 seconds [~ 445 test (54.66830466830467%) started, 369 in queue, 32 running] Finished PeptideCyclizeMover in 22 seconds [~ 445 test (54.66830466830467%) started, 369 in queue, 31 running] Finished test_computed_saxs_spectrum in 22 seconds [~ 445 test (54.66830466830467%) started, 369 in queue, 30 running] Running Test grid_scores_features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/grid_scores_features/command.sh Running Test exclusively_shared_jumps ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/exclusively_shared_jumps/command.sh Running Test custom_basetype_packer_palette ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/custom_basetype_packer_palette/command.sh Finished swm_protein_move_inside_helix_by_bond in 22 seconds [~ 448 test (55.03685503685504%) started, 366 in queue, 32 running] Finished simple_dna_test in 21 seconds [~ 448 test (55.03685503685504%) started, 366 in queue, 31 running] Running Test crosslinkermover_thioether ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_thioether/command.sh Running Test create_sequence_motif ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/create_sequence_motif/command.sh Finished enzscore_filter_metal_sym in 23 seconds [~ 450 test (55.28255528255528%) started, 364 in queue, 32 running] Finished coarse_rna_scoring in 23 seconds [~ 450 test (55.28255528255528%) started, 364 in queue, 31 running] Running Test UnsatSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UnsatSelector/command.sh Running Test LayerDesign_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerDesign_symm/command.sh Finished classic_relax_1a19 in 23 seconds [~ 452 test (55.52825552825553%) started, 362 in queue, 32 running] Finished mp_ligand_interface in 21 seconds [~ 452 test (55.52825552825553%) started, 362 in queue, 31 running] Running Test FloppyTail ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FloppyTail/command.sh Running Test FlipChirality ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FlipChirality/command.sh Finished rosetta_scripts_hbond_options in 22 seconds [~ 454 test (55.77395577395578%) started, 360 in queue, 32 running] Finished ppk in 22 seconds [~ 454 test (55.77395577395578%) started, 360 in queue, 31 running] Running Test ContactMolecularSurface ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ContactMolecularSurface/command.sh Finished enzscore_filter_dimetal_sym in 23 seconds [~ 456 test (56.01965601965602%) started, 358 in queue, 32 running] Running Test write_mol_file ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/write_mol_file/command.sh Running Test vancomycin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/vancomycin/command.sh Finished swm_rna_checkpoint_partition in 23 seconds [~ 457 test (56.14250614250614%) started, 357 in queue, 32 running] Running Test threefoldlinkermover_tbmb_symmetric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefoldlinkermover_tbmb_symmetric/command.sh Finished pna in 25 seconds [~ 458 test (56.26535626535627%) started, 356 in queue, 32 running] Finished genkic_rama_filter in 22 seconds [~ 458 test (56.26535626535627%) started, 356 in queue, 31 running] Running Test threefoldlinkermover_tbmb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefoldlinkermover_tbmb/command.sh Running Test symmetry_data_resource ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetry_data_resource/command.sh Finished fuzzy in 22 seconds [~ 460 test (56.51105651105651%) started, 354 in queue, 32 running] Running Test symmetric_cycpep_align_and_symmetrize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetric_cycpep_align_and_symmetrize/command.sh Finished enzscore_filter_metal in 21 seconds [~ 461 test (56.63390663390663%) started, 353 in queue, 32 running] Running Test sample_seq_from_probs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sample_seq_from_probs/command.sh Finished enzscore_filter_dimetal in 22 seconds [~ 462 test (56.75675675675676%) started, 352 in queue, 32 running] Running Test rotamer_recovery ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_recovery/command.sh Finished ddG_scan in 22 seconds [~ 463 test (56.87960687960688%) started, 351 in queue, 32 running] Running Test rna_farfar_syn_chi_res ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_syn_chi_res/command.sh Finished crosslinkermover_tetrahedral_metal_asp in 22 seconds [~ 464 test (57.002457002457%) started, 350 in queue, 32 running] Running Test resource_database_locator ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/resource_database_locator/command.sh Finished crosslinkermover_lanthionine in 22 seconds [~ 465 test (57.125307125307124%) started, 349 in queue, 32 running] Running Test res_lipo_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/res_lipo_ref2015_memb/command.sh Finished backbonegridsampler_multiresidue in 22 seconds [~ 466 test (57.24815724815725%) started, 348 in queue, 32 running] Running Test repeat_propagate_v2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate_v2/command.sh Finished symmetric_docking in 21 seconds [~ 467 test (57.37100737100737%) started, 347 in queue, 32 running] Finished sim_cryo in 20 seconds [~ 467 test (57.37100737100737%) started, 347 in queue, 31 running] Running Test real_virt_mover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/real_virt_mover/command.sh Running Test readin_dna_rna_protein ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/readin_dna_rna_protein/command.sh Finished rosetta_scripts_setup in 21 seconds [~ 469 test (57.616707616707615%) started, 345 in queue, 32 running] Running Test rdkit_metrics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rdkit_metrics/command.sh Finished repeat_propagate_v3 in 20 seconds [~ 470 test (57.73955773955774%) started, 344 in queue, 32 running] Running Test rama_mutation_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rama_mutation_selector/command.sh Finished rna_denovo_base_pair_setup in 21 seconds [~ 471 test (57.86240786240786%) started, 343 in queue, 32 running] Running Test pna_base_pairs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pna_base_pairs/command.sh Finished repeat_propagate in 20 seconds [~ 472 test (57.98525798525799%) started, 342 in queue, 32 running] Running Test mp_span_ang_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_span_ang_ref2015_memb/command.sh Finished protocol_metric in 21 seconds [~ 473 test (58.108108108108105%) started, 341 in queue, 32 running] Running Test mp_quick_relax_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_quick_relax_ref2015_memb/command.sh Finished perturb_helical_bundle_z_offset in 20 seconds [~ 474 test (58.23095823095823%) started, 340 in queue, 32 running] Running Test mf_flexbb_sc ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_flexbb_sc/command.sh Finished perturb_helical_bundle_epsilon in 21 seconds [~ 475 test (58.353808353808354%) started, 339 in queue, 32 running] Running Test make_rot_lib ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_rot_lib/command.sh Finished grid_scores_features in 20 seconds [~ 476 test (58.47665847665848%) started, 338 in queue, 32 running] Finished vancomycin in 19 seconds [~ 476 test (58.47665847665848%) started, 338 in queue, 31 running] Running Test loop_creation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_creation/command.sh Running Test genkic_ramaprepro_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_ramaprepro_sampling/command.sh Finished write_mol_file in 20 seconds [~ 478 test (58.72235872235872%) started, 336 in queue, 32 running] Running Test features_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_pdb/command.sh Finished metalloprotein_abrelax in 21 seconds [~ 479 test (58.845208845208845%) started, 335 in queue, 32 running] Finished exclusively_shared_jumps in 21 seconds [~ 479 test (58.845208845208845%) started, 335 in queue, 31 running] Running Test database_session_resource ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_session_resource/command.sh Running Test cst_info ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cst_info/command.sh Finished create_sequence_motif in 21 seconds [~ 481 test (59.09090909090909%) started, 333 in queue, 32 running] Finished UnsatSelector in 21 seconds [~ 481 test (59.09090909090909%) started, 333 in queue, 31 running] Running Test crosslinkermover_tetrahedral_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal/command.sh Running Test bin_perturbation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bin_perturbation/command.sh Finished FloppyTail in 21 seconds [~ 483 test (59.336609336609335%) started, 331 in queue, 32 running] Finished FlipChirality in 21 seconds [~ 483 test (59.336609336609335%) started, 331 in queue, 31 running] Finished threefoldlinkermover_tbmb_symmetric in 20 seconds [~ 483 test (59.336609336609335%) started, 331 in queue, 30 running] Running Test autosetup_metals_centroid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/autosetup_metals_centroid/command.sh Running Test RBOut ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RBOut/command.sh Running Test PDB_diagnostic ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PDB_diagnostic/command.sh Finished custom_basetype_packer_palette in 22 seconds [~ 486 test (59.70515970515971%) started, 328 in queue, 32 running] Finished symmetry_data_resource in 20 seconds [~ 486 test (59.70515970515971%) started, 328 in queue, 31 running] Running Test InterfaceDdG ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceDdG/command.sh Running Test DumpTrajectoryEnergy_packing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DumpTrajectoryEnergy_packing/command.sh Finished ContactMolecularSurface in 21 seconds [~ 488 test (59.95085995085995%) started, 326 in queue, 32 running] Finished LayerDesign_symm in 21 seconds [~ 489 test (60.073710073710075%) started, 325 in queue, 32 running] Running Test ConsensusLoopDesign ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ConsensusLoopDesign/command.sh Running Test BFactorSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/BFactorSelector/command.sh Finished crosslinkermover_thioether in 22 seconds [~ 490 test (60.1965601965602%) started, 324 in queue, 32 running] Finished threefoldlinkermover_tbmb in 20 seconds [~ 490 test (60.1965601965602%) started, 324 in queue, 31 running] Running Test swm_rna_fourwayjunction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_fourwayjunction/command.sh Running Test swm_protein_move_inside_coiledcoil_by_bond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_move_inside_coiledcoil_by_bond/command.sh Finished rotamer_recovery in 18 seconds [~ 492 test (60.44226044226044%) started, 322 in queue, 32 running] Running Test swm_protein_CCDmove ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_CCDmove/command.sh Finished symmetric_cycpep_align_and_symmetrize in 19 seconds [~ 493 test (60.565110565110565%) started, 321 in queue, 32 running] Running Test swa_rna_gagu_15_combine_long_loop_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_15_combine_long_loop_sampling/command.sh Finished sample_seq_from_probs in 20 seconds [~ 494 test (60.68796068796069%) started, 320 in queue, 32 running] Running Test smallmover_resselector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/smallmover_resselector/command.sh Finished rna_farfar_syn_chi_res in 19 seconds [~ 495 test (60.810810810810814%) started, 319 in queue, 32 running] Running Test sequence_recovery ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_recovery/command.sh Finished resource_database_locator in 20 seconds [~ 496 test (60.93366093366093%) started, 318 in queue, 32 running] Running Test selected_residue_count_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/selected_residue_count_metric/command.sh Finished res_lipo_ref2015_memb in 19 seconds [~ 497 test (61.056511056511056%) started, 317 in queue, 32 running] Finished repeat_propagate_v2 in 19 seconds [~ 497 test (61.056511056511056%) started, 317 in queue, 31 running] Running Test rna_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_design/command.sh Running Test rna_assemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_assemble/command.sh Finished readin_dna_rna_protein in 20 seconds [~ 499 test (61.302211302211305%) started, 315 in queue, 32 running] Running Test genkic_bin_perturbing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_perturbing/command.sh Finished real_virt_mover in 20 seconds [~ 500 test (61.42506142506142%) started, 314 in queue, 32 running] Running Test fold_cst_new ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_cst_new/command.sh Finished rdkit_metrics in 20 seconds [~ 501 test (61.547911547911546%) started, 313 in queue, 32 running] Running Test enzscore_filter_ligand ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_ligand/command.sh Finished rama_mutation_selector in 19 seconds [~ 502 test (61.67076167076167%) started, 312 in queue, 32 running] Running Test dihedral_constraint_generator ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dihedral_constraint_generator/command.sh Finished pna_base_pairs in 19 seconds [~ 503 test (61.793611793611795%) started, 311 in queue, 32 running] Running Test cluster_alns ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_alns/command.sh Finished mp_span_ang_ref2015_memb in 19 seconds [~ 504 test (61.91646191646192%) started, 310 in queue, 32 running] Running Test add_job_pair_data ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_job_pair_data/command.sh Finished mp_quick_relax_ref2015_memb in 19 seconds [~ 505 test (62.03931203931204%) started, 309 in queue, 32 running] Running Test StrandHelixGeometryFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/StrandHelixGeometryFilter/command.sh Finished mf_flexbb_sc in 19 seconds [~ 506 test (62.16216216216216%) started, 308 in queue, 32 running] Running Test StrandCurvatureByLevels ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/StrandCurvatureByLevels/command.sh Finished make_rot_lib in 20 seconds [~ 507 test (62.285012285012286%) started, 307 in queue, 32 running] Finished loop_creation in 20 seconds [~ 507 test (62.285012285012286%) started, 307 in queue, 31 running] Finished swm_rna_fourwayjunction in 18 seconds [~ 507 test (62.285012285012286%) started, 307 in queue, 30 running] Running Test SecondaryStructureFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SecondaryStructureFilter/command.sh Running Test PeptideStubMover_prependRepeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PeptideStubMover_prependRepeat/command.sh Finished database_session_resource in 19 seconds [~ 510 test (62.65356265356265%) started, 304 in queue, 32 running] Running Test OversaturatedHbondAcceptorFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/OversaturatedHbondAcceptorFilter/command.sh Running Test MutateResidue_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/MutateResidue_selector/command.sh Finished genkic_ramaprepro_sampling in 20 seconds [~ 511 test (62.776412776412776%) started, 303 in queue, 32 running] Finished swm_protein_move_inside_coiledcoil_by_bond in 18 seconds [~ 512 test (62.8992628992629%) started, 302 in queue, 32 running] Running Test LoopLengthChange ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LoopLengthChange/command.sh Running Test HelixBendFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HelixBendFilter/command.sh Finished bin_perturbation in 19 seconds [~ 513 test (63.022113022113025%) started, 301 in queue, 32 running] Running Test FilterReportAsPoseExtraScoresMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FilterReportAsPoseExtraScoresMover/command.sh Finished RBOut in 19 seconds [~ 514 test (63.14496314496314%) started, 300 in queue, 32 running] Finished swm_protein_CCDmove in 18 seconds [~ 514 test (63.14496314496314%) started, 300 in queue, 31 running] Running Test FavorSequenceProfileMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FavorSequenceProfileMover/command.sh Running Test DumpTrajectoryEnergy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DumpTrajectoryEnergy/command.sh Finished features_pdb in 20 seconds [~ 516 test (63.39066339066339%) started, 298 in queue, 32 running] Finished autosetup_metals_centroid in 19 seconds [~ 516 test (63.39066339066339%) started, 298 in queue, 31 running] Running Test AddConstraintsToCurrentConformationMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AddConstraintsToCurrentConformationMover/command.sh Running Test swm_rna_protonated_adenosine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_protonated_adenosine/command.sh Finished cst_info in 20 seconds [~ 518 test (63.63636363636363%) started, 296 in queue, 32 running] Finished crosslinkermover_tetrahedral_metal in 20 seconds [~ 518 test (63.63636363636363%) started, 296 in queue, 31 running] Running Test swa_rna_gagu_23_append_and_kic_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_23_append_and_kic_close/command.sh Running Test swa_rna_gagu_22_prepend_and_kic_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_22_prepend_and_kic_close/command.sh Finished swa_rna_gagu_15_combine_long_loop_sampling in 18 seconds [~ 520 test (63.88206388206388%) started, 294 in queue, 32 running] Running Test swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/command.sh Finished PDB_diagnostic in 20 seconds [~ 521 test (64.004914004914%) started, 293 in queue, 32 running] Finished InterfaceDdG in 20 seconds [~ 521 test (64.004914004914%) started, 293 in queue, 31 running] Finished BFactorSelector in 20 seconds [~ 521 test (64.004914004914%) started, 293 in queue, 30 running] Running Test swa_rna_gagu_13_chunk_combination_and_closure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_13_chunk_combination_and_closure/command.sh Running Test swa_rna_gagu_10_prepend_and_ccd_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_10_prepend_and_ccd_close/command.sh Running Test stored_residue_subset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/stored_residue_subset/command.sh Finished DumpTrajectoryEnergy_packing in 20 seconds [~ 524 test (64.37346437346437%) started, 290 in queue, 32 running] Finished ConsensusLoopDesign in 20 seconds [~ 524 test (64.37346437346437%) started, 290 in queue, 31 running] Running Test simple_cycpep_predict_terminal_disulfide_internal_permutations ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_internal_permutations/command.sh Running Test simple_cycpep_predict_sidechain_isopeptide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.sh Finished smallmover_resselector in 19 seconds [~ 526 test (64.61916461916462%) started, 288 in queue, 32 running] Running Test oop_dock_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_dock_design/command.sh Finished sequence_recovery in 18 seconds [~ 527 test (64.74201474201475%) started, 287 in queue, 32 running] Running Test mp_symmetry_load ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_symmetry_load/command.sh Finished selected_residue_count_metric in 19 seconds [~ 528 test (64.86486486486487%) started, 286 in queue, 32 running] Running Test mf_fixbb_sc ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_fixbb_sc/command.sh Finished rna_design in 19 seconds [~ 529 test (64.987714987715%) started, 285 in queue, 32 running] Finished rna_assemble in 19 seconds [~ 529 test (64.987714987715%) started, 285 in queue, 31 running] Running Test genkic_dihedral_copying ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_dihedral_copying/command.sh Running Test design_w_custom_palette-RNA ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-RNA/command.sh Finished genkic_bin_perturbing in 19 seconds [~ 531 test (65.23341523341523%) started, 283 in queue, 32 running] Running Test density_refine_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_refine_symm/command.sh Finished fold_cst_new in 19 seconds [~ 532 test (65.35626535626535%) started, 282 in queue, 32 running] Running Test dehydro_aa_patch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dehydro_aa_patch/command.sh Finished enzscore_filter_ligand in 19 seconds [~ 533 test (65.47911547911548%) started, 281 in queue, 32 running] Finished cluster_alns in 19 seconds [~ 533 test (65.47911547911548%) started, 281 in queue, 31 running] Running Test buried_area_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_area_filter/command.sh Running Test ambiguous_nmr_distance_constraint ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ambiguous_nmr_distance_constraint/command.sh Finished dihedral_constraint_generator in 20 seconds [~ 535 test (65.72481572481573%) started, 279 in queue, 32 running] Running Test SSElementSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SSElementSelector/command.sh Finished add_job_pair_data in 19 seconds [~ 536 test (65.84766584766585%) started, 278 in queue, 32 running] Running Test symmetrical_residue_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetrical_residue_selector/command.sh Finished swa_rna_gagu_23_append_and_kic_close in 17 seconds [~ 537 test (65.97051597051598%) started, 277 in queue, 32 running] Running Test swm_build_full_model ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_build_full_model/command.sh Finished simple_cycpep_predict_terminal_disulfide_internal_permutations in 17 seconds [~ 538 test (66.0933660933661%) started, 276 in queue, 32 running] Running Test swm_add_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_add_rosettascripts/command.sh Finished swa_rna_gagu_22_prepend_and_kic_close in 18 seconds [~ 539 test (66.21621621621621%) started, 275 in queue, 32 running] Finished swa_rna_gagu_10_prepend_and_ccd_close in 17 seconds [~ 539 test (66.21621621621621%) started, 275 in queue, 31 running] Running Test swa_rna_gagu_18_rebuild_bulge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_18_rebuild_bulge/command.sh Running Test swa_rna_gagu_11_append_and_ccd_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_11_append_and_ccd_close/command.sh Finished StrandHelixGeometryFilter in 20 seconds [~ 541 test (66.46191646191646%) started, 273 in queue, 32 running] Finished LoopLengthChange in 19 seconds [~ 541 test (66.46191646191646%) started, 273 in queue, 31 running] Running Test set_torsion ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/set_torsion/command.sh Running Test referencepose_mutateresidue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/referencepose_mutateresidue/command.sh Finished StrandCurvatureByLevels in 20 seconds [~ 543 test (66.70761670761671%) started, 271 in queue, 32 running] Finished FilterReportAsPoseExtraScoresMover in 19 seconds [~ 543 test (66.70761670761671%) started, 271 in queue, 31 running] Running Test pocket_measure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_measure/command.sh Running Test phiselector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phiselector/command.sh Finished PeptideStubMover_prependRepeat in 20 seconds [~ 545 test (66.95331695331696%) started, 269 in queue, 32 running] Finished OversaturatedHbondAcceptorFilter in 20 seconds [~ 545 test (66.95331695331696%) started, 269 in queue, 31 running] Finished MutateResidue_selector in 20 seconds [~ 545 test (66.95331695331696%) started, 269 in queue, 30 running] Finished swm_rna_protonated_adenosine in 19 seconds [~ 545 test (66.95331695331696%) started, 269 in queue, 29 running] Finished swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide in 18 seconds [~ 545 test (66.95331695331696%) started, 269 in queue, 28 running] Finished swa_rna_gagu_13_chunk_combination_and_closure in 18 seconds [~ 545 test (66.95331695331696%) started, 269 in queue, 27 running] Finished stored_residue_subset in 18 seconds [~ 545 test (66.95331695331696%) started, 269 in queue, 26 running] Running Test mp_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock/command.sh Running Test metal_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metal_setup/command.sh Running Test make_and_perturb_bundle_multirepeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_and_perturb_bundle_multirepeat/command.sh Running Test longest_continuous_polar_segment_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/longest_continuous_polar_segment_filter/command.sh Running Test hbondstoresidue_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbondstoresidue_selector/command.sh Running Test genkic_bin_setting ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_setting/command.sh Running Test create_clash-based_repack_shell ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/create_clash-based_repack_shell/command.sh Finished SecondaryStructureFilter in 20 seconds [~ 552 test (67.81326781326781%) started, 262 in queue, 32 running] Finished HelixBendFilter in 20 seconds [~ 552 test (67.81326781326781%) started, 262 in queue, 31 running] Finished AddConstraintsToCurrentConformationMover in 19 seconds [~ 552 test (67.81326781326781%) started, 262 in queue, 30 running] Running Test copy_rotamer_mover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/copy_rotamer_mover/command.sh Running Test binselector_probins ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/binselector_probins/command.sh Running Test binselector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/binselector/command.sh Finished FavorSequenceProfileMover in 20 seconds [~ 555 test (68.18181818181819%) started, 259 in queue, 32 running] Finished DumpTrajectoryEnergy in 20 seconds [~ 555 test (68.18181818181819%) started, 259 in queue, 31 running] Finished simple_cycpep_predict_sidechain_isopeptide in 19 seconds [~ 555 test (68.18181818181819%) started, 259 in queue, 30 running] Finished oop_dock_design in 18 seconds [~ 555 test (68.18181818181819%) started, 259 in queue, 29 running] Running Test backbonegridsampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler/command.sh Running Test ModifyVariantTypeMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ModifyVariantTypeMover/command.sh Running Test tna_base_pairs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/tna_base_pairs/command.sh Running Test swm_rna_move_inside_helix_by_bond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_bond/command.sh Finished mp_symmetry_load in 18 seconds [~ 559 test (68.67321867321867%) started, 255 in queue, 32 running] Running Test surface_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/surface_docking/command.sh Finished mf_fixbb_sc in 18 seconds [~ 560 test (68.7960687960688%) started, 254 in queue, 32 running] Running Test rnp_ddg_relax_command_1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_command_1/command.sh Finished genkic_dihedral_copying in 19 seconds [~ 561 test (68.91891891891892%) started, 253 in queue, 32 running] Running Test rna_puzzle6_j67_into_p6p7rigidbody_thread1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle6_j67_into_p6p7rigidbody_thread1/command.sh Finished design_w_custom_palette-RNA in 19 seconds [~ 562 test (69.04176904176904%) started, 252 in queue, 32 running] Running Test rna_denovo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo/command.sh Finished density_refine_symm in 18 seconds [~ 563 test (69.16461916461917%) started, 251 in queue, 32 running] Running Test helix_from_sequence ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helix_from_sequence/command.sh Finished buried_area_filter in 18 seconds [~ 564 test (69.28746928746929%) started, 250 in queue, 32 running] Finished symmetrical_residue_selector in 16 seconds [~ 564 test (69.28746928746929%) started, 250 in queue, 31 running] Running Test helical_bundle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle/command.sh Running Test genkic_bin_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_sampling/command.sh Finished dehydro_aa_patch in 19 seconds [~ 566 test (69.53316953316953%) started, 248 in queue, 32 running] Running Test zinc_homodimer_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_homodimer_setup/command.sh Finished ambiguous_nmr_distance_constraint in 19 seconds [~ 567 test (69.65601965601965%) started, 247 in queue, 32 running] Running Test target_clash ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/target_clash/command.sh Finished swa_rna_gagu_18_rebuild_bulge in 16 seconds [~ 568 test (69.77886977886978%) started, 246 in queue, 32 running] Finished swa_rna_gagu_11_append_and_ccd_close in 16 seconds [~ 568 test (69.77886977886978%) started, 246 in queue, 31 running] Running Test swa_rna_gagu_12_helix_addition ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_12_helix_addition/command.sh Running Test simple_cycpep_predict_terminal_disulfide_tails ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.sh Finished swm_build_full_model in 17 seconds [~ 570 test (70.02457002457002%) started, 244 in queue, 32 running] Running Test simple_cycpep_predict_symmetric_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_symmetric_sampling/command.sh Finished SSElementSelector in 19 seconds [~ 571 test (70.14742014742015%) started, 243 in queue, 32 running] Finished set_torsion in 17 seconds [~ 571 test (70.14742014742015%) started, 243 in queue, 31 running] Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.sh Running Test simple_cycpep_predict_nterm_isopeptide_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.sh Finished metal_setup in 16 seconds [~ 573 test (70.3931203931204%) started, 241 in queue, 32 running] Running Test rna_denovo_new_FT_5P_j12_leadzyme ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_5P_j12_leadzyme/command.sh Finished referencepose_mutateresidue in 17 seconds [~ 574 test (70.51597051597052%) started, 240 in queue, 32 running] Finished pocket_measure in 17 seconds [~ 574 test (70.51597051597052%) started, 240 in queue, 31 running] Finished mp_dock in 16 seconds [~ 574 test (70.51597051597052%) started, 240 in queue, 30 running] Running Test recces_turner ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/recces_turner/command.sh Running Test mp_mutate_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_mutate_relax/command.sh Running Test mmtfIO_score_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mmtfIO_score_test/command.sh Finished swm_rna_move_inside_helix_by_bond in 16 seconds [~ 577 test (70.88452088452088%) started, 237 in queue, 32 running] Running Test database_jd2_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_jd2_io/command.sh Finished phiselector in 17 seconds [~ 578 test (71.007371007371%) started, 236 in queue, 32 running] Finished hbondstoresidue_selector in 17 seconds [~ 578 test (71.007371007371%) started, 236 in queue, 31 running] Finished genkic_bin_setting in 17 seconds [~ 578 test (71.007371007371%) started, 236 in queue, 30 running] Finished create_clash-based_repack_shell in 17 seconds [~ 578 test (71.007371007371%) started, 236 in queue, 29 running] Finished copy_rotamer_mover in 17 seconds [~ 578 test (71.007371007371%) started, 236 in queue, 28 running] Running Test database_jd2_compact_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_jd2_compact_io/command.sh Running Test abinitio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/abinitio/command.sh Running Test swm_rna_nickedhelix ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_nickedhelix/command.sh Running Test simple_cycpep_predict_sidechain_isopeptide_reverse ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.sh Finished make_and_perturb_bundle_multirepeat in 17 seconds [~ 583 test (71.62162162162163%) started, 231 in queue, 32 running] Running Test score_jd2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_jd2/command.sh Running Test mp_range_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_range_relax/command.sh Finished longest_continuous_polar_segment_filter in 17 seconds [~ 584 test (71.74447174447174%) started, 230 in queue, 32 running] Finished binselector_probins in 17 seconds [~ 584 test (71.74447174447174%) started, 230 in queue, 31 running] Running Test molfile_to_params ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/molfile_to_params/command.sh Running Test hshash_utils ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hshash_utils/command.sh Finished binselector in 17 seconds [~ 586 test (71.99017199017199%) started, 228 in queue, 32 running] Finished backbonegridsampler in 17 seconds [~ 586 test (71.99017199017199%) started, 228 in queue, 31 running] Finished ModifyVariantTypeMover in 17 seconds [~ 586 test (71.99017199017199%) started, 228 in queue, 30 running] Running Test glycosylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycosylation/command.sh Running Test InterfaceAnalyzer_resfile ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_resfile/command.sh Running Test InterfaceAnalyzer_bothpack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_bothpack/command.sh Finished tna_base_pairs in 19 seconds [~ 589 test (72.35872235872236%) started, 225 in queue, 32 running] Running Test unfolded_state_energy_calc ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/unfolded_state_energy_calc/command.sh Finished swm_add_rosettascripts in 21 seconds [~ 590 test (72.48157248157248%) started, 224 in queue, 32 running] Running Test stepwise_lores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/stepwise_lores/command.sh Finished rnp_ddg_relax_command_1 in 13 seconds [~ 591 test (72.60442260442261%) started, 223 in queue, 32 running] Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.sh Finished surface_docking in 15 seconds [~ 592 test (72.72727272727273%) started, 222 in queue, 32 running] Running Test rna_predict_chem_map ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_predict_chem_map/command.sh Finished rna_puzzle6_j67_into_p6p7rigidbody_thread1 in 16 seconds [~ 593 test (72.85012285012284%) started, 221 in queue, 32 running] Running Test rb_recces ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rb_recces/command.sh Finished rna_denovo in 16 seconds [~ 594 test (72.97297297297297%) started, 220 in queue, 32 running] Running Test mpi_multistate_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpi_multistate_design/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails in 11 seconds [~ 595 test (73.09582309582309%) started, 219 in queue, 32 running] Running Test mp_mutate_repack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_mutate_repack/command.sh Finished glycosylation in 9 seconds [~ 596 test (73.21867321867322%) started, 218 in queue, 32 running] Running Test gen_apo_grids ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/gen_apo_grids/command.sh Finished helix_from_sequence in 16 seconds [~ 597 test (73.34152334152334%) started, 217 in queue, 32 running] Running Test fold_and_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_and_dock/command.sh Finished zinc_homodimer_setup in 15 seconds [~ 598 test (73.46437346437347%) started, 216 in queue, 32 running] Running Test energy_based_clustering_alpha_aa_scorefile ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_scorefile/command.sh Finished rna_denovo_new_FT_5P_j12_leadzyme in 14 seconds [~ 599 test (73.58722358722359%) started, 215 in queue, 32 running] Finished mp_range_relax in 14 seconds [~ 599 test (73.58722358722359%) started, 215 in queue, 31 running] Running Test docking_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_prepack/command.sh Running Test broker_membrane ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/broker_membrane/command.sh Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 14 seconds [~ 601 test (73.83292383292384%) started, 213 in queue, 32 running] Finished score_jd2 in 14 seconds [~ 601 test (73.83292383292384%) started, 213 in queue, 31 running] Running Test blob_finder ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/blob_finder/command.sh Running Test trRosetta_test_predict_ubiquitin_cst_file_write_only ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write_only/command.sh Finished helical_bundle in 17 seconds [~ 603 test (74.07862407862407%) started, 211 in queue, 32 running] Finished genkic_bin_sampling in 17 seconds [~ 603 test (74.07862407862407%) started, 211 in queue, 31 running] Finished swa_rna_gagu_12_helix_addition in 15 seconds [~ 603 test (74.07862407862407%) started, 211 in queue, 30 running] Running Test trRosetta_test_predict_ubiquitin_cst_file_write ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write/command.sh No correct command.sh file found for tensorflow_manager. Skipping. Running Test trRosetta_test_predict_ubiquitin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin/command.sh Running Test swm_rna_loop_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_loop_design/command.sh Finished simple_cycpep_predict_nterm_isopeptide_lariat in 15 seconds [~ 607 test (74.57002457002457%) started, 207 in queue, 32 running] Finished mp_mutate_relax in 15 seconds [~ 607 test (74.57002457002457%) started, 207 in queue, 31 running] Running Test swm_protein_from_scratch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_from_scratch/command.sh Running Test simple_cycpep_predict_cterm_isopeptide_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.sh Finished hshash_utils in 14 seconds [~ 609 test (74.81572481572482%) started, 205 in queue, 32 running] Running Test rna_puzzle6_U75G76A77_on_thread1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle6_U75G76A77_on_thread1/command.sh Finished mmtfIO_score_test in 15 seconds [~ 610 test (74.93857493857494%) started, 204 in queue, 32 running] Finished database_jd2_io in 15 seconds [~ 610 test (74.93857493857494%) started, 204 in queue, 31 running] Finished molfile_to_params in 14 seconds [~ 610 test (74.93857493857494%) started, 204 in queue, 30 running] Running Test mp_transform_optimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_transform_optimize/command.sh Running Test assemble_domains_jd2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/assemble_domains_jd2/command.sh No correct command.sh file found for tensorflow_simple_model_load_and_evaluate. Skipping. Running Test InterfaceAnalyzer_prepack No correct command.sh file found for tensorflow_connection_test. Skipping. ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_prepack/command.sh Finished database_jd2_compact_io in 15 seconds [~ 615 test (75.55282555282555%) started, 199 in queue, 32 running] Running Test swa_rna_gagu_17_append_floating_base ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_17_append_floating_base/command.sh Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 15 seconds [~ 616 test (75.67567567567568%) started, 198 in queue, 32 running] Finished abinitio in 15 seconds [~ 616 test (75.67567567567568%) started, 198 in queue, 31 running] Running Test swa_rna_gagu_03_append_to_silent ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_03_append_to_silent/command.sh Running Test simple_cycpep_predict_nmethyl ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nmethyl/command.sh Finished recces_turner in 15 seconds [~ 618 test (75.92137592137593%) started, 196 in queue, 32 running] Finished swm_rna_nickedhelix in 15 seconds [~ 618 test (75.92137592137593%) started, 196 in queue, 31 running] Finished InterfaceAnalyzer_resfile in 14 seconds [~ 618 test (75.92137592137593%) started, 196 in queue, 30 running] Running Test rna_motif ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_motif/command.sh Running Test restype_converter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/restype_converter/command.sh Running Test phosphorylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phosphorylation/command.sh Finished simple_cycpep_predict_symmetric_sampling in 16 seconds [~ 621 test (76.28992628992629%) started, 193 in queue, 32 running] Finished InterfaceAnalyzer_bothpack in 15 seconds [~ 621 test (76.28992628992629%) started, 193 in queue, 31 running] Running Test pepspec_anchor_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pepspec_anchor_dock/command.sh Running Test mp_dock_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_setup/command.sh Finished stepwise_lores in 13 seconds [~ 623 test (76.53562653562653%) started, 191 in queue, 32 running] Running Test ligand_motif_discovery ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_discovery/command.sh Finished unfolded_state_energy_calc in 14 seconds [~ 624 test (76.65847665847666%) started, 190 in queue, 32 running] Running Test docking_low_res ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_low_res/command.sh Finished target_clash in 19 seconds [~ 625 test (76.78132678132678%) started, 189 in queue, 32 running] Finished rna_predict_chem_map in 13 seconds [~ 625 test (76.78132678132678%) started, 189 in queue, 31 running] Running Test InterfaceAnalyzer_tracer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_tracer/command.sh Running Test InterfaceAnalyzer_allscores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_allscores/command.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 13 seconds [~ 627 test (77.02702702702703%) started, 187 in queue, 32 running] Running Test swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/command.sh Finished rb_recces in 13 seconds [~ 628 test (77.14987714987716%) started, 186 in queue, 32 running] Running Test swa_rna_gagu_20_append_floating_base_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_20_append_floating_base_by_jump/command.sh Finished mpi_multistate_design in 13 seconds [~ 629 test (77.27272727272727%) started, 185 in queue, 32 running] Running Test swa_rna_gagu_08_append_dinucleotide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_08_append_dinucleotide/command.sh Finished mp_mutate_repack in 13 seconds [~ 630 test (77.39557739557739%) started, 184 in queue, 32 running] Running Test swa_rna_gagu_07_prepend_dinucleotide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_07_prepend_dinucleotide/command.sh Finished gen_apo_grids in 13 seconds [~ 631 test (77.51842751842752%) started, 183 in queue, 32 running] Running Test swa_rna_gagu_06_append_to_3primeterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_06_append_to_3primeterminus/command.sh Finished energy_based_clustering_alpha_aa_scorefile in 12 seconds [~ 632 test (77.64127764127764%) started, 182 in queue, 32 running] Running Test swa_rna_gagu_05_prepend_to_5primeterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_05_prepend_to_5primeterminus/command.sh Finished restype_converter in 9 seconds [~ 633 test (77.76412776412776%) started, 181 in queue, 32 running] Finished swa_rna_gagu_17_append_floating_base in 10 seconds [~ 634 test (77.88697788697789%) started, 180 in queue, 32 running] Running Test swa_rna_gagu_02_prepend ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_02_prepend/command.sh Running Test swa_rna_gagu_01_append ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_01_append/command.sh Finished fold_and_dock in 13 seconds [~ 635 test (78.00982800982801%) started, 179 in queue, 32 running] Running Test simple_cycpep_predict_terminal_disulfide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.sh Finished swm_rna_loop_design in 11 seconds [~ 636 test (78.13267813267814%) started, 178 in queue, 32 running] Finished phosphorylation in 10 seconds [~ 636 test (78.13267813267814%) started, 178 in queue, 31 running] Running Test simple_cycpep_predict_lanthionine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.sh Running Test rna_puzzle5_p2_GAAA_mini ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle5_p2_GAAA_mini/command.sh Finished trRosetta_test_predict_ubiquitin_cst_file_write_only in 11 seconds [~ 638 test (78.37837837837837%) started, 176 in queue, 32 running] Finished simple_cycpep_predict_nmethyl in 10 seconds [~ 638 test (78.37837837837837%) started, 176 in queue, 31 running] Finished rna_motif in 10 seconds [~ 638 test (78.37837837837837%) started, 176 in queue, 30 running] Running Test rna_denovo_grid_vdw ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_grid_vdw/command.sh Running Test orbitals ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/orbitals/command.sh Finished blob_finder in 11 seconds [~ 641 test (78.74692874692875%) started, 173 in queue, 32 running] Running Test metalloprotein_broker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metalloprotein_broker/command.sh Running Test jscore ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jscore/command.sh Finished trRosetta_test_predict_ubiquitin_cst_file_write in 11 seconds [~ 642 test (78.86977886977887%) started, 172 in queue, 32 running] Finished trRosetta_test_predict_ubiquitin in 11 seconds [~ 642 test (78.86977886977887%) started, 172 in queue, 31 running] Running Test hotspot_stub_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_stub_constraints/command.sh Running Test cmaes_minimizer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cmaes_minimizer/command.sh Finished rna_puzzle6_U75G76A77_on_thread1 in 11 seconds [~ 644 test (79.11547911547912%) started, 170 in queue, 32 running] Finished pepspec_anchor_dock in 10 seconds [~ 644 test (79.11547911547912%) started, 170 in queue, 31 running] Running Test SID_rescore ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SID_rescore/command.sh Running Test InterfaceAnalyzer_ligand ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_ligand/command.sh Finished swm_protein_from_scratch in 12 seconds [~ 646 test (79.36117936117937%) started, 168 in queue, 32 running] Finished simple_cycpep_predict_cterm_isopeptide_lariat in 12 seconds [~ 646 test (79.36117936117937%) started, 168 in queue, 31 running] Finished swa_rna_gagu_03_append_to_silent in 11 seconds [~ 646 test (79.36117936117937%) started, 168 in queue, 30 running] Running Test swm_rna_move_align_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_align_dock/command.sh Running Test swa_rna_gagu_19_prepend_floating_base_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_19_prepend_floating_base_by_jump/command.sh Running Test struc_set_fragment_picker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/struc_set_fragment_picker/command.sh Finished mp_transform_optimize in 11 seconds [~ 649 test (79.72972972972973%) started, 165 in queue, 32 running] Running Test sequence_tolerance ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_tolerance/command.sh Finished docking_prepack in 12 seconds [~ 650 test (79.85257985257985%) started, 164 in queue, 32 running] Finished ligand_motif_discovery in 10 seconds [~ 650 test (79.85257985257985%) started, 164 in queue, 31 running] Running Test rna_minimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_minimize/command.sh Running Test rna_helix ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_helix/command.sh Finished assemble_domains_jd2 in 12 seconds [~ 652 test (80.0982800982801%) started, 162 in queue, 32 running] Finished mp_dock_setup in 11 seconds [~ 652 test (80.0982800982801%) started, 162 in queue, 31 running] Running Test phosphonate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phosphonate/command.sh Running Test output_schema ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/output_schema/command.sh Finished broker_membrane in 13 seconds [~ 654 test (80.34398034398035%) started, 160 in queue, 32 running] Finished InterfaceAnalyzer_prepack in 12 seconds [~ 654 test (80.34398034398035%) started, 160 in queue, 31 running] Running Test ligand_motif_identification ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_identification/command.sh Running Test identify_cdr_clusters ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/identify_cdr_clusters/command.sh Finished swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump in 9 seconds [~ 656 test (80.58968058968058%) started, 158 in queue, 32 running] Running Test energy_based_clustering_alpha_aa_dihedral ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_dihedral/command.sh Finished docking_low_res in 11 seconds [~ 657 test (80.71253071253071%) started, 157 in queue, 32 running] Running Test duplicate_header_guards ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/duplicate_header_guards/command.sh Finished InterfaceAnalyzer_tracer in 11 seconds [~ 658 test (80.83538083538083%) started, 156 in queue, 32 running] Finished InterfaceAnalyzer_allscores in 11 seconds [~ 658 test (80.83538083538083%) started, 156 in queue, 31 running] Running Test cartesianddg ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cartesianddg/command.sh Running Test antibody_numbering_converter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_numbering_converter/command.sh Finished swa_rna_gagu_20_append_floating_base_by_jump in 9 seconds [~ 660 test (81.08108108108108%) started, 154 in queue, 32 running] Running Test ProQ ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ProQ/command.sh Finished swa_rna_gagu_08_append_dinucleotide in 9 seconds [~ 661 test (81.2039312039312%) started, 153 in queue, 32 running] Running Test swm_protein_preminimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_preminimize/command.sh Finished swa_rna_gagu_07_prepend_dinucleotide in 9 seconds [~ 662 test (81.32678132678133%) started, 152 in queue, 32 running] Running Test swa_protein_cluster ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_cluster/command.sh Finished swa_rna_gagu_06_append_to_3primeterminus in 10 seconds [~ 663 test (81.44963144963145%) started, 151 in queue, 32 running] Running Test rna_ribosome_tether ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_ribosome_tether/command.sh Finished swa_rna_gagu_05_prepend_to_5primeterminus in 9 seconds [~ 664 test (81.57248157248158%) started, 150 in queue, 32 running] Running Test rna_denovo_bps ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps/command.sh Finished swa_rna_gagu_02_prepend in 10 seconds [~ 665 test (81.69533169533169%) started, 149 in queue, 32 running] Finished simple_cycpep_predict_terminal_disulfide in 9 seconds [~ 666 test (81.81818181818181%) started, 148 in queue, 32 running] Running Test pymol_cif ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pymol_cif/command.sh Running Test pwsho ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pwsho/command.sh Finished swa_rna_gagu_01_append in 10 seconds [~ 667 test (81.94103194103194%) started, 147 in queue, 32 running] Running Test per_residue_energies ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_energies/command.sh Finished struc_set_fragment_picker in 9 seconds [~ 668 test (82.06388206388206%) started, 146 in queue, 32 running] Finished rna_helix in 8 seconds [~ 668 test (82.06388206388206%) started, 146 in queue, 31 running] Running Test mutate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mutate/command.sh Running Test mp_vis_emb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_vis_emb/command.sh Finished swm_rna_move_align_dock in 9 seconds [~ 670 test (82.30958230958231%) started, 144 in queue, 32 running] Finished sequence_tolerance in 9 seconds [~ 670 test (82.30958230958231%) started, 144 in queue, 31 running] Running Test mp_interface_statistics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_interface_statistics/command.sh Running Test mg_modeler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mg_modeler/command.sh Finished rna_denovo_grid_vdw in 10 seconds [~ 672 test (82.55528255528256%) started, 142 in queue, 32 running] Finished rna_minimize in 9 seconds [~ 672 test (82.55528255528256%) started, 142 in queue, 31 running] Running Test jrelax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jrelax/command.sh Running Test interface_energy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/interface_energy/command.sh Finished rna_puzzle5_p2_GAAA_mini in 10 seconds [~ 674 test (82.8009828009828%) started, 140 in queue, 32 running] Finished orbitals in 10 seconds [~ 674 test (82.8009828009828%) started, 140 in queue, 31 running] Finished hotspot_stub_constraints in 10 seconds [~ 674 test (82.8009828009828%) started, 140 in queue, 30 running] Finished ligand_motif_identification in 8 seconds [~ 674 test (82.8009828009828%) started, 140 in queue, 29 running] Running Test ig_dump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ig_dump/command.sh Running Test glycan_clash_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_clash_check/command.sh Running Test geometric_solvation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/geometric_solvation/command.sh Running Test gen_lig_grids ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/gen_lig_grids/command.sh Finished metalloprotein_broker in 10 seconds [~ 678 test (83.29238329238329%) started, 136 in queue, 32 running] Finished swa_rna_gagu_19_prepend_floating_base_by_jump in 10 seconds [~ 678 test (83.29238329238329%) started, 136 in queue, 31 running] Finished phosphonate in 9 seconds [~ 678 test (83.29238329238329%) started, 136 in queue, 30 running] Running Test fragmentpicker_integration_demo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fragmentpicker_integration_demo/command.sh Running Test extract_atomtree_diffs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/extract_atomtree_diffs/command.sh Running Test erraser_minimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/erraser_minimize/command.sh Finished simple_cycpep_predict_lanthionine in 11 seconds [~ 681 test (83.66093366093367%) started, 133 in queue, 32 running] Finished jscore in 10 seconds [~ 681 test (83.66093366093367%) started, 133 in queue, 31 running] Finished cmaes_minimizer in 10 seconds [~ 681 test (83.66093366093367%) started, 133 in queue, 30 running] Finished SID_rescore in 10 seconds [~ 681 test (83.66093366093367%) started, 133 in queue, 29 running] Finished output_schema in 9 seconds [~ 681 test (83.66093366093367%) started, 133 in queue, 28 running] Running Test energy_based_clustering_alpha_aa_bin_analysis ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_bin_analysis/command.sh Running Test energy_based_clustering_alpha_aa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa/command.sh Running Test docking_local_refine_min ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_local_refine_min/command.sh Running Test distances ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/distances/command.sh Running Test density_tools ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_tools/command.sh Finished InterfaceAnalyzer_ligand in 10 seconds [~ 686 test (84.27518427518427%) started, 128 in queue, 32 running] Running Test constel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/constel/command.sh Finished energy_based_clustering_alpha_aa_dihedral in 9 seconds [~ 687 test (84.3980343980344%) started, 127 in queue, 32 running] Running Test coenzymes ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coenzymes/command.sh Finished identify_cdr_clusters in 10 seconds [~ 688 test (84.52088452088452%) started, 126 in queue, 32 running] Running Test cl_complex_rescore ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cl_complex_rescore/command.sh Finished cartesianddg in 9 seconds [~ 689 test (84.64373464373465%) started, 125 in queue, 32 running] Running Test c-term_conjugation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/c-term_conjugation/command.sh Finished duplicate_header_guards in 10 seconds [~ 690 test (84.76658476658477%) started, 124 in queue, 32 running] Running Test DARC_sampling_on_the_fly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_sampling_on_the_fly/command.sh Finished antibody_numbering_converter in 10 seconds [~ 691 test (84.8894348894349%) started, 123 in queue, 32 running] Running Test DARC_make_ray_files ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_make_ray_files/command.sh Finished swm_protein_preminimize in 7 seconds [~ 692 test (85.012285012285%) started, 122 in queue, 32 running] Running Test swm_rna_move_two_strands ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_two_strands/command.sh Finished ProQ in 9 seconds [~ 693 test (85.13513513513513%) started, 121 in queue, 32 running] Running Test sweep_respair_energies ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sweep_respair_energies/command.sh Finished swa_protein_cluster in 8 seconds [~ 694 test (85.25798525798525%) started, 120 in queue, 32 running] Running Test swa_rna_loop_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_loop_sampler/command.sh Finished rna_ribosome_tether in 8 seconds [~ 695 test (85.38083538083538%) started, 119 in queue, 32 running] Running Test site_constraint ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/site_constraint/command.sh Finished pymol_cif in 7 seconds [~ 696 test (85.5036855036855%) started, 118 in queue, 32 running] Running Test shobuns ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/shobuns/command.sh Finished rna_denovo_bps in 8 seconds [~ 697 test (85.62653562653563%) started, 117 in queue, 32 running] Finished mutate in 7 seconds [~ 697 test (85.62653562653563%) started, 117 in queue, 31 running] Running Test rotamer_recovery_compare_two_structures ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_recovery_compare_two_structures/command.sh Running Test rna_score ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_score/command.sh Finished pwsho in 8 seconds [~ 699 test (85.87223587223588%) started, 115 in queue, 32 running] Finished mp_vis_emb in 7 seconds [~ 699 test (85.87223587223588%) started, 115 in queue, 31 running] Running Test rna_denovo_bps_helix_ends ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps_helix_ends/command.sh Running Test rna_denovo_bps_fixed_ends ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps_fixed_ends/command.sh Finished per_residue_energies in 8 seconds [~ 701 test (86.11793611793611%) started, 113 in queue, 32 running] Finished mg_modeler in 7 seconds [~ 701 test (86.11793611793611%) started, 113 in queue, 31 running] Running Test read_polymeric_components ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/read_polymeric_components/command.sh Running Test pocket_suggest_targets ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_suggest_targets/command.sh Finished mp_interface_statistics in 8 seconds [~ 703 test (86.36363636363636%) started, 111 in queue, 32 running] Finished interface_energy in 7 seconds [~ 703 test (86.36363636363636%) started, 111 in queue, 31 running] Finished geometric_solvation in 7 seconds [~ 703 test (86.36363636363636%) started, 111 in queue, 30 running] Running Test noe_assignment ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/noe_assignment/command.sh Running Test mp_transform ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_transform/command.sh Running Test mp_score_jd2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_score_jd2/command.sh Finished jrelax in 8 seconds [~ 706 test (86.73218673218673%) started, 108 in queue, 32 running] Finished gen_lig_grids in 8 seconds [~ 706 test (86.73218673218673%) started, 108 in queue, 31 running] Finished fragmentpicker_integration_demo in 7 seconds [~ 706 test (86.73218673218673%) started, 108 in queue, 30 running] Finished extract_atomtree_diffs in 7 seconds [~ 706 test (86.73218673218673%) started, 108 in queue, 29 running] Running Test mp_dock_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_prepack/command.sh Running Test measure_lcaa_radii ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/measure_lcaa_radii/command.sh Running Test fragment_picker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fragment_picker/command.sh Running Test fix_alignment_to_match_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fix_alignment_to_match_pdb/command.sh Finished ig_dump in 8 seconds [~ 710 test (87.22358722358722%) started, 104 in queue, 32 running] Finished glycan_clash_check in 8 seconds [~ 710 test (87.22358722358722%) started, 104 in queue, 31 running] Finished distances in 7 seconds [~ 710 test (87.22358722358722%) started, 104 in queue, 30 running] Running Test cs_rosetta_rna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cs_rosetta_rna/command.sh Running Test cluster ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster/command.sh Running Test buried_unsat_kinemage ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_kinemage/command.sh egrep: full_minimize_temp_1.out: No such file or directory Finished erraser_minimize in 8 seconds [~ 713 test (87.59213759213759%) started, 101 in queue, 32 running] Running Test trRosettaProtocolMover_rosettascripts_diskwrite_only ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite_only/command.sh Finished constel in 8 seconds [~ 714 test (87.71498771498771%) started, 100 in queue, 32 running] Running Test trRosettaProtocolMover_rosettascripts_diskwrite ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite/command.sh Finished docking_local_refine_min in 8 seconds [~ 715 test (87.83783783783784%) started, 99 in queue, 32 running] Finished density_tools in 8 seconds [~ 715 test (87.83783783783784%) started, 99 in queue, 31 running] Running Test trRosettaProtocolMover_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts/command.sh Running Test rna_denovo_new_FT_rna_two_chains ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_rna_two_chains/command.sh Finished energy_based_clustering_alpha_aa_bin_analysis in 8 seconds [~ 717 test (88.08353808353809%) started, 97 in queue, 32 running] Finished energy_based_clustering_alpha_aa in 8 seconds [~ 717 test (88.08353808353809%) started, 97 in queue, 31 running] Finished coenzymes in 8 seconds [~ 717 test (88.08353808353809%) started, 97 in queue, 30 running] Running Test pH_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pH_mode/command.sh Running Test mpil_find_pore_bbarrel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_find_pore_bbarrel/command.sh Running Test mp_loadtime ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_loadtime/command.sh Finished cl_complex_rescore in 8 seconds [~ 720 test (88.45208845208845%) started, 94 in queue, 32 running] Running Test mg_modeler_lores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mg_modeler_lores/command.sh Finished c-term_conjugation in 8 seconds [~ 721 test (88.57493857493857%) started, 93 in queue, 32 running] Running Test match_1c2t ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_1c2t/command.sh Finished DARC_sampling_on_the_fly in 8 seconds [~ 722 test (88.6977886977887%) started, 92 in queue, 32 running] Running Test make_mainchain_potential_symm_preproline ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential_symm_preproline/command.sh Finished DARC_make_ray_files in 8 seconds [~ 723 test (88.82063882063882%) started, 91 in queue, 32 running] Running Test make_mainchain_potential_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential_symm/command.sh Finished swm_rna_move_two_strands in 7 seconds [~ 724 test (88.94348894348894%) started, 90 in queue, 32 running] Running Test make_exemplar ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_exemplar/command.sh Finished sweep_respair_energies in 7 seconds [~ 725 test (89.06633906633907%) started, 89 in queue, 32 running] Running Test features_database_schema ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_database_schema/command.sh Finished site_constraint in 7 seconds [~ 726 test (89.1891891891892%) started, 88 in queue, 32 running] Running Test drrafter_setup_ribosome_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_ribosome_test/command.sh Finished swa_rna_loop_sampler in 7 seconds [~ 727 test (89.31203931203932%) started, 87 in queue, 32 running] Running Test drrafter_setup_real_test_H_no_init ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_real_test_H_no_init/command.sh Finished shobuns in 7 seconds [~ 728 test (89.43488943488944%) started, 86 in queue, 32 running] Running Test drrafter_setup_real_test_H ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_real_test_H/command.sh Finished rna_score in 7 seconds [~ 729 test (89.55773955773955%) started, 85 in queue, 32 running] Finished read_polymeric_components in 6 seconds [~ 729 test (89.55773955773955%) started, 85 in queue, 31 running] Running Test contactMap ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/contactMap/command.sh Running Test cluster_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_filter/command.sh Finished rotamer_recovery_compare_two_structures in 7 seconds [~ 731 test (89.8034398034398%) started, 83 in queue, 32 running] Finished rna_denovo_bps_helix_ends in 7 seconds [~ 731 test (89.8034398034398%) started, 83 in queue, 31 running] Finished mp_transform in 6 seconds [~ 731 test (89.8034398034398%) started, 83 in queue, 30 running] Finished mpil_find_pore_bbarrel in 5 seconds [~ 731 test (89.8034398034398%) started, 83 in queue, 29 running] Running Test ResidueDisorder ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ResidueDisorder/command.sh Running Test RescorePDDF ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RescorePDDF/command.sh Running Test template_features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/template_features/command.sh Finished rna_denovo_bps_fixed_ends in 7 seconds [~ 735 test (90.2948402948403%) started, 79 in queue, 32 running] Running Test super_aln ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/super_aln/command.sh Running Test silent2frag ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/silent2frag/command.sh Finished pocket_suggest_targets in 7 seconds [~ 736 test (90.41769041769042%) started, 78 in queue, 32 running] Finished noe_assignment in 7 seconds [~ 736 test (90.41769041769042%) started, 78 in queue, 31 running] Running Test rna_screen_phosphates ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_screen_phosphates/command.sh Running Test rings ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rings/command.sh Finished trRosettaProtocolMover_rosettascripts_diskwrite_only in 6 seconds [~ 738 test (90.66339066339066%) started, 76 in queue, 32 running] Finished pH_mode in 6 seconds [~ 738 test (90.66339066339066%) started, 76 in queue, 31 running] Running Test nucleobase_sample_around ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/nucleobase_sample_around/command.sh Running Test non-canonical_connectivities ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/non-canonical_connectivities/command.sh Finished mp_score_jd2 in 7 seconds [~ 740 test (90.9090909090909%) started, 74 in queue, 32 running] Finished trRosettaProtocolMover_rosettascripts_diskwrite in 6 seconds [~ 740 test (90.9090909090909%) started, 74 in queue, 31 running] Running Test motif_extraction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_extraction/command.sh Running Test ld_converter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ld_converter/command.sh Finished mp_dock_prepack in 7 seconds [~ 742 test (91.15479115479116%) started, 72 in queue, 32 running] Finished fragment_picker in 7 seconds [~ 742 test (91.15479115479116%) started, 72 in queue, 31 running] Finished trRosettaProtocolMover_rosettascripts in 6 seconds [~ 742 test (91.15479115479116%) started, 72 in queue, 30 running] Finished mp_loadtime in 6 seconds [~ 742 test (91.15479115479116%) started, 72 in queue, 29 running] Running Test code_template_tests_citations ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_citations/command.sh Running Test centroid_disulfide_scores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/centroid_disulfide_scores/command.sh Running Test test_idealize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_idealize/command.sh Running Test test_d_l_readin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_d_l_readin/command.sh Finished measure_lcaa_radii in 7 seconds [~ 746 test (91.64619164619165%) started, 68 in queue, 32 running] Finished fix_alignment_to_match_pdb in 7 seconds [~ 746 test (91.64619164619165%) started, 68 in queue, 31 running] Finished cluster in 7 seconds [~ 746 test (91.64619164619165%) started, 68 in queue, 30 running] Running Test select_best_unique_ligand_poses ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/select_best_unique_ligand_poses/command.sh Running Test rosetta_scripts_info ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_info/command.sh Finished cs_rosetta_rna in 7 seconds [~ 749 test (92.01474201474201%) started, 65 in queue, 32 running] Running Test rna_minimize_6D_loop_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_minimize_6D_loop_close/command.sh Running Test r_pdb2top ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/r_pdb2top/command.sh Finished buried_unsat_kinemage in 8 seconds [~ 750 test (92.13759213759214%) started, 64 in queue, 32 running] Finished rna_denovo_new_FT_rna_two_chains in 7 seconds [~ 750 test (92.13759213759214%) started, 64 in queue, 31 running] Finished mg_modeler_lores in 6 seconds [~ 750 test (92.13759213759214%) started, 64 in queue, 30 running] Running Test per_residue_sc_sasa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_sc_sasa/command.sh Running Test oop_create ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_create/command.sh Running Test mpil_load_implicit_lipids ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_load_implicit_lipids/command.sh Finished match_1c2t in 6 seconds [~ 753 test (92.50614250614251%) started, 61 in queue, 32 running] Running Test mpil_find_pore_ahelical ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_find_pore_ahelical/command.sh Finished make_mainchain_potential_symm_preproline in 6 seconds [~ 754 test (92.62899262899263%) started, 60 in queue, 32 running] Running Test minimize_6Dloopclose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/minimize_6Dloopclose/command.sh Finished make_mainchain_potential_symm in 6 seconds [~ 755 test (92.75184275184276%) started, 59 in queue, 32 running] Running Test fit_helixparams_rms ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams_rms/command.sh Finished template_features in 4 seconds [~ 756 test (92.87469287469287%) started, 58 in queue, 32 running] Running Test drrafter_error_estimation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_error_estimation/command.sh Finished drrafter_setup_ribosome_test in 6 seconds [~ 757 test (92.997542997543%) started, 57 in queue, 32 running] Finished super_aln in 4 seconds [~ 757 test (92.997542997543%) started, 57 in queue, 31 running] Finished test_d_l_readin in 3 seconds [~ 757 test (92.997542997543%) started, 57 in queue, 30 running] Running Test cstfile_to_theozyme_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cstfile_to_theozyme_pdb/command.sh Running Test code_template_tests_src ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_src/command.sh Running Test angle_recovery_stats ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/angle_recovery_stats/command.sh Finished drrafter_setup_real_test_H_no_init in 6 seconds [~ 760 test (93.36609336609337%) started, 54 in queue, 32 running] Finished silent2frag in 5 seconds [~ 760 test (93.36609336609337%) started, 54 in queue, 31 running] Running Test N-terminal_acetylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/N-terminal_acetylation/command.sh Running Test DNA_methylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DNA_methylation/command.sh Finished contactMap in 6 seconds [~ 762 test (93.61179361179362%) started, 52 in queue, 32 running] Finished rings in 5 seconds [~ 762 test (93.61179361179362%) started, 52 in queue, 31 running] Finished test_idealize in 4 seconds [~ 762 test (93.61179361179362%) started, 52 in queue, 30 running] Finished rna_minimize_6D_loop_close in 4 seconds [~ 762 test (93.61179361179362%) started, 52 in queue, 29 running] Running Test DARC_shapeonly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_shapeonly/command.sh Running Test DARC_electrostatics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_electrostatics/command.sh Running Test CCS_PARCS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/CCS_PARCS/command.sh Running Test CCD_loop_closure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/CCD_loop_closure/command.sh Finished features_database_schema in 8 seconds [~ 766 test (94.1031941031941%) started, 48 in queue, 32 running] Finished ResidueDisorder in 5 seconds [~ 766 test (94.1031941031941%) started, 48 in queue, 31 running] Finished ld_converter in 4 seconds [~ 766 test (94.1031941031941%) started, 48 in queue, 30 running] Finished r_pdb2top in 4 seconds [~ 766 test (94.1031941031941%) started, 48 in queue, 29 running] Running Test swa_rna_loop_clusterer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_loop_clusterer/command.sh Running Test swa_rna_gagu_14_combine_long_loop_filtering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_14_combine_long_loop_filtering/command.sh Running Test swa_rna_gagu_04_clustering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_04_clustering/command.sh Finished rna_screen_phosphates in 5 seconds [~ 770 test (94.5945945945946%) started, 44 in queue, 32 running] Finished per_residue_sc_sasa in 4 seconds [~ 770 test (94.5945945945946%) started, 44 in queue, 31 running] Running Test rna_suitename ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_suitename/command.sh Running Test rna_cluster ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_cluster/command.sh Running Test rna_add_WC_stats ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_add_WC_stats/command.sh Finished drrafter_setup_real_test_H in 6 seconds [~ 772 test (94.84029484029485%) started, 42 in queue, 32 running] Finished RescorePDDF in 6 seconds [~ 772 test (94.84029484029485%) started, 42 in queue, 31 running] Finished nucleobase_sample_around in 5 seconds [~ 772 test (94.84029484029485%) started, 42 in queue, 30 running] Finished select_best_unique_ligand_poses in 4 seconds [~ 772 test (94.84029484029485%) started, 42 in queue, 29 running] Finished mpil_load_implicit_lipids in 4 seconds [~ 772 test (94.84029484029485%) started, 42 in queue, 28 running] Running Test report_hbonds_for_plugin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/report_hbonds_for_plugin/command.sh Running Test ralford_dump_rotamers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ralford_dump_rotamers/command.sh Running Test r_rmsf ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/r_rmsf/command.sh Running Test number_of_residuetypes ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/number_of_residuetypes/command.sh Finished motif_extraction in 5 seconds [~ 777 test (95.45454545454545%) started, 37 in queue, 32 running] Running Test loop_hash ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_hash/command.sh Running Test include_cc_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/include_cc_check/command.sh Finished mpil_find_pore_ahelical in 4 seconds [~ 778 test (95.57739557739558%) started, 36 in queue, 32 running] Running Test fit_helixparams_a3b ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams_a3b/command.sh Finished cluster_filter in 6 seconds [~ 779 test (95.7002457002457%) started, 35 in queue, 32 running] Finished centroid_disulfide_scores in 5 seconds [~ 779 test (95.7002457002457%) started, 35 in queue, 31 running] Finished oop_create in 4 seconds [~ 779 test (95.7002457002457%) started, 35 in queue, 30 running] Finished minimize_6Dloopclose in 4 seconds [~ 779 test (95.7002457002457%) started, 35 in queue, 29 running] Running Test calculate_sasa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/calculate_sasa/command.sh Running Test test_energy_method_options ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_energy_method_options/command.sh Running Test per_residue_solvent_exposure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_solvent_exposure/command.sh Running Test mp_span_from_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_span_from_pdb/command.sh Finished make_exemplar in 10 seconds [~ 783 test (96.19164619164619%) started, 31 in queue, 32 running] Running Test hierarchical_clustering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hierarchical_clustering/command.sh database/citations/rosetta_citations.txt -> database/citations/rosetta_citations.original.txt First script ran successfully. Second script ran successfully. Output matches expectation. Finished code_template_tests_citations in 5 seconds [~ 784 test (96.31449631449631%) started, 30 in queue, 32 running] Running Test fit_helixparams ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams/command.sh Finished fit_helixparams_rms in 5 seconds [~ 785 test (96.43734643734643%) started, 29 in queue, 32 running] Running Test discontinuous_sewing_hasher ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/discontinuous_sewing_hasher/command.sh Finished test_energy_method_options in 1 seconds [~ 786 test (96.56019656019656%) started, 28 in queue, 32 running] Running Test combine_silent ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/combine_silent/command.sh Finished per_residue_solvent_exposure in 1 seconds [~ 787 test (96.68304668304668%) started, 27 in queue, 32 running] No correct command.sh file found for basic_gcn_tensorflow_test. Skipping. Running Test burial_measure_centroid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/burial_measure_centroid/command.sh Finished rosetta_scripts_info in 7 seconds [~ 789 test (96.92874692874693%) started, 25 in queue, 32 running] Finished N-terminal_acetylation in 3 seconds [~ 789 test (96.92874692874693%) started, 25 in queue, 31 running] Running Test BuildPeptide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/BuildPeptide/command.sh Running Test trRosettaConstraintGenerator_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaConstraintGenerator_rosettascripts/command.sh Finished non-canonical_connectivities in 7 seconds [~ 791 test (97.17444717444718%) started, 23 in queue, 32 running] Finished drrafter_error_estimation in 4 seconds [~ 791 test (97.17444717444718%) started, 23 in queue, 31 running] Running Test score_aln ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_aln/command.sh Running Test header_using_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/header_using_check/command.sh test_general test_abstract test_mover test_ws_energy_method test_1b_energy_method test_2b_energy_method test_task_operation test_features_reporter test_residue_selector test_residue_selector_in_core test_crosslinker_mover_helper test_util Finished CCS_PARCS in 3 seconds [~ 793 test (97.42014742014742%) started, 21 in queue, 32 running] Finished rna_cluster in 3 seconds [~ 793 test (97.42014742014742%) started, 21 in queue, 31 running] Finished loop_hash in 3 seconds [~ 793 test (97.42014742014742%) started, 21 in queue, 30 running] Finished mp_span_from_pdb in 2 seconds [~ 793 test (97.42014742014742%) started, 21 in queue, 29 running] Running Test extract_pdbs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/extract_pdbs/command.sh Running Test crossaln ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crossaln/command.sh Running Test continuous_sewing_hasher ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/continuous_sewing_hasher/command.sh Finished discontinuous_sewing_hasher in 1 seconds [~ 797 test (97.91154791154791%) started, 17 in queue, 32 running] Running Test rnp_ddg_relax_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_setup/command.sh Running Test rnp_ddg_relax_finalize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_finalize/command.sh PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python Finished code_template_tests_src in 4 seconds [~ 798 test (98.03439803439804%) started, 16 in queue, 32 running] Finished DNA_methylation in 4 seconds [~ 798 test (98.03439803439804%) started, 16 in queue, 31 running] Finished rna_suitename in 3 seconds [~ 798 test (98.03439803439804%) started, 16 in queue, 30 running] Finished rna_add_WC_stats in 3 seconds [~ 798 test (98.03439803439804%) started, 16 in queue, 29 running] Finished number_of_residuetypes in 3 seconds [~ 798 test (98.03439803439804%) started, 16 in queue, 28 running] Finished rnp_ddg_relax_setup in 0 seconds [~ 798 test (98.03439803439804%) started, 16 in queue, 27 running] Finished rnp_ddg_relax_finalize in 0 seconds [~ 798 test (98.03439803439804%) started, 16 in queue, 26 running] Running Test rnp_ddg_finalize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_finalize/command.sh Running Test rnp_ddg_calc_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_setup/command.sh Running Test mp_quick_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_quick_relax/command.sh Running Test features_scientific_benchmark ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_scientific_benchmark/command.sh Running Test features_postgres ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_postgres/command.sh Running Test drrafter_setup_simple ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_simple/command.sh Finished swa_rna_loop_clusterer in 3 seconds [~ 805 test (98.8943488943489%) started, 9 in queue, 32 running] Finished swa_rna_gagu_04_clustering in 3 seconds [~ 805 test (98.8943488943489%) started, 9 in queue, 31 running] Running Test drrafter_setup_protein_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_protein_dock/command.sh Running Test drrafter_setup_build_missing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_build_missing/command.sh Running Test drrafter_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup/command.sh PYTHON is /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python sed: 1: "cc_includes.txt": command c expects \ followed by text PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python Finished cstfile_to_theozyme_pdb in 4 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 32 running] Finished angle_recovery_stats in 4 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 31 running] Finished DARC_shapeonly in 4 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 30 running] Finished DARC_electrostatics in 4 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 29 running] Finished r_rmsf in 3 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 28 running] Finished fit_helixparams_a3b in 3 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 27 running] Finished mp_quick_relax in 0 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 26 running] Finished features_scientific_benchmark in 0 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 25 running] Finished features_postgres in 0 seconds [~ 807 test (99.14004914004914%) started, 7 in queue, 24 running] Running Test code_template_tests_unit ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_unit/command.sh Running Test code_template_tests_app ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_app/command.sh Running Test cluster_calibur ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_calibur/command.sh Running Test central_class_modification ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/central_class_modification/command.sh Running Test case_sensitive_filenames ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/case_sensitive_filenames/command.sh Running Test Werror_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/Werror_check/command.sh Running Test RescoreSAXS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RescoreSAXS/command.sh Calibur clustering has been broken since its inception. The external version was never successfully integration tested because of typos in the integration test. The version ported to Rosetta has never worked either. Since now it causes hard-failures on release_debug, it needs to be deactivated for now. Running Test HOW_TO_MAKE_TESTS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HOW_TO_MAKE_TESTS/command.sh Checking the status of the -Werror option in the Scons build settings: PASS Checking the status of the -Werror option in the CMake build settings: PASS Finished swa_rna_gagu_14_combine_long_loop_filtering in 4 seconds [~ 814 test (100.0%) started, 0 in queue, 30 running] Finished ralford_dump_rotamers in 3 seconds [~ 814 test (100.0%) started, 0 in queue, 29 running] Finished include_cc_check in 3 seconds [~ 814 test (100.0%) started, 0 in queue, 28 running] Finished calculate_sasa in 3 seconds [~ 814 test (100.0%) started, 0 in queue, 27 running] Finished hierarchical_clustering in 3 seconds [~ 814 test (100.0%) started, 0 in queue, 26 running] Finished fit_helixparams in 2 seconds [~ 814 test (100.0%) started, 0 in queue, 25 running] Finished rnp_ddg_finalize in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 24 running] Finished rnp_ddg_calc_setup in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 23 running] Finished cluster_calibur in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 22 running] Finished central_class_modification in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 21 running] Finished Werror_check in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 20 running] Finished RescoreSAXS in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 19 running] Finished HOW_TO_MAKE_TESTS in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 18 running] Finished report_hbonds_for_plugin in 4 seconds [~ 814 test (100.0%) started, 0 in queue, 17 running] Finished combine_silent in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 16 running] Finished drrafter_setup_simple in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 15 running] Finished drrafter_setup_protein_dock in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 14 running] Finished drrafter_setup_build_missing in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 13 running] Finished drrafter_setup in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 12 running] Finished code_template_tests_unit in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 11 running] /usr/bin/git 05ba3ce142c657ded53097d3c9b34f4dc5a62433 Finished burial_measure_centroid in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 10 running] Finished trRosettaConstraintGenerator_rosettascripts in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 9 running] Finished score_aln in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 8 running] Finished header_using_check in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 7 running] Finished code_template_tests_app in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 6 running] Finished CCD_loop_closure in 4 seconds [~ 814 test (100.0%) started, 0 in queue, 5 running] Finished extract_pdbs in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 4 running] Finished continuous_sewing_hasher in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 3 running] Finished case_sensitive_filenames in 0 seconds [~ 814 test (100.0%) started, 0 in queue, 2 running] Finished crossaln in 1 seconds [~ 814 test (100.0%) started, 0 in queue, 1 running] Finished BuildPeptide in 2 seconds [~ 814 test (100.0%) started, 0 in queue, 0 running] Skipping comparison/analysis phase because command line option "--skip-comparison" was specified... Missing new/runtimes.yaml ──────────────── 'hojo-3' comparing main:62148 mac.clang.python39.integration test_id=851635 vs. main:62147 previous_test_id=850207 ────────────────

Sub-Tests Results

mac.clang.python39.integration.AddConstraintsToCurrentConformationMover 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/AddConstraintsToCurrentConformationMover/log and /home/benchmark/working_dir/main:62148/AddConstraintsToCurrentConformationMover/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AddConstraintsToCurrentConformationMover/log /home/benchmark/working_dir/main:62148/AddConstraintsToCurrentConformationMover/log 14c14 < core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.AlignPDBInfoToSequences 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c1 and /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c1 differ Files /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c2 and /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c2 differ Files /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c3 and /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c3 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c1 /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c1 14c14 < core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c2 /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c2 14c14 < core.import_pose.import_pose: File '1GL2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1GL2.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c3 /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c3 14c14 < core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.AnchorFinder 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/AnchorFinder/log and /home/benchmark/working_dir/main:62148/AnchorFinder/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AnchorFinder/log /home/benchmark/working_dir/main:62148/AnchorFinder/log 34c34 < core.import_pose.import_pose: File './pdbs/3cym.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cym.pdb.gz' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File './pdbs/3cy2.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cy2.pdb.gz' automatically determined to be of type PDB from contents. 629c629 < core.import_pose.import_pose: File './pdbs/3cyh.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyh.pdb.gz' automatically determined to be of type PDB from contents. 968c968 < core.import_pose.import_pose: File './pdbs/3cyu.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyu.pdb.gz' automatically determined to be of type PDB from contents. 980c980 < core.import_pose.import_pose: File './pdbs/3cye.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cye.pdb.gz' automatically determined to be of type PDB from contents. 2599c2599 < core.import_pose.import_pose: File './pdbs/3cyj.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyj.pdb.gz' automatically determined to be of type PDB from contents. 5551c5551 < core.import_pose.import_pose: File './pdbs/3cyg.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyg.pdb.gz' automatically determined to be of type PDB from contents. 6441c6441 < core.import_pose.import_pose: File './pdbs/3cyi.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyi.pdb.gz' automatically determined to be of type PDB from contents. 6449c6449 < core.import_pose.import_pose: File './pdbs/3cyv.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyv.pdb.gz' automatically determined to be of type PDB from contents. 6454c6454 < core.import_pose.import_pose: File './pdbs/3cyr.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyr.pdb.gz' automatically determined to be of type PDB from contents. 6554c6554 < core.import_pose.import_pose: File './pdbs/3cy6.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cy6.pdb.gz' automatically determined to be of type PDB from contents. 6560c6560 < core.import_pose.import_pose: File './pdbs/3cyk.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyk.pdb.gz' automatically determined to be of type PDB from contents. 7536c7536 < core.import_pose.import_pose: File './pdbs/3cyf.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyf.pdb.gz' automatically determined to be of type PDB from contents. 7543c7543 < core.import_pose.import_pose: File './pdbs/3cyp.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyp.pdb.gz' automatically determined to be of type PDB from contents. 8603c8603 < core.import_pose.import_pose: File './pdbs/3cyo.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyo.pdb.gz' automatically determined to be of type PDB from contents. 8610c8610 < core.import_pose.import_pose: File './pdbs/3cyy.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyy.pdb.gz' automatically determined to be of type PDB from contents. 8980c8980 < core.import_pose.import_pose: File './pdbs/3cyq.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyq.pdb.gz' automatically determined to be of type PDB from contents. 13253c13253 < core.import_pose.import_pose: File './pdbs/3cy3.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cy3.pdb.gz' automatically determined to be of type PDB from contents. 13839c13839 < core.import_pose.import_pose: File './pdbs/3cyl.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyl.pdb.gz' automatically determined to be of type PDB from contents. 14373c14373 < core.import_pose.import_pose: File './pdbs/3cyz.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cyz.pdb.gz' automatically determined to be of type PDB from contents. 14860c14860 < core.import_pose.import_pose: File './pdbs/3cy4.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdbs/3cy4.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.AnchoredDesign 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/AnchoredDesign/log and /home/benchmark/working_dir/main:62148/AnchoredDesign/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AnchoredDesign/log /home/benchmark/working_dir/main:62148/AnchoredDesign/log 14c14 < core.import_pose.import_pose: File '1FNA_2DF6a_BC1_start.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1FNA_2DF6a_BC1_start.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.AnchoredPDBCreator 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/AnchoredPDBCreator/log and /home/benchmark/working_dir/main:62148/AnchoredPDBCreator/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AnchoredPDBCreator/log /home/benchmark/working_dir/main:62148/AnchoredPDBCreator/log 9,10c9,10 < core.import_pose.import_pose: File '1FNA_22.27del_noFGdel.pdb.gz' automatically determined to be of type PDB < core.import_pose.import_pose: File 'anchor.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1FNA_22.27del_noFGdel.pdb.gz' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'anchor.pdb.gz' automatically determined to be of type PDB from contents. 12c12 < core.import_pose.import_pose: File 'target.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'target.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.BFactorSelector 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/BFactorSelector/log_case1 and /home/benchmark/working_dir/main:62148/BFactorSelector/log_case1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/BFactorSelector/log_case1 /home/benchmark/working_dir/main:62148/BFactorSelector/log_case1 14c14 < core.import_pose.import_pose: File 'model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.CCS_PARCS 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/CCS_PARCS/log and /home/benchmark/working_dir/main:62148/CCS_PARCS/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/CCS_PARCS/log /home/benchmark/working_dir/main:62148/CCS_PARCS/log 8c8 < core.import_pose.import_pose: File './r_2MLT_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './r_2MLT_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ContactMolecularSurface 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ContactMolecularSurface/log and /home/benchmark/working_dir/main:62148/ContactMolecularSurface/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ContactMolecularSurface/log /home/benchmark/working_dir/main:62148/ContactMolecularSurface/log 14c14 < core.import_pose.import_pose: File 'inputs/aaFR02_54569.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/aaFR02_54569.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.DARC_electrostatics 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/DARC_electrostatics/log and /home/benchmark/working_dir/main:62148/DARC_electrostatics/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_electrostatics/log /home/benchmark/working_dir/main:62148/DARC_electrostatics/log 8c8 < core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents. 11c11 < core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.DARC_make_ray_files 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/DARC_make_ray_files/log and /home/benchmark/working_dir/main:62148/DARC_make_ray_files/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_make_ray_files/log /home/benchmark/working_dir/main:62148/DARC_make_ray_files/log 8c8 < core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents. 10c10 < core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.DARC_sampling_on_the_fly 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/DARC_sampling_on_the_fly/log and /home/benchmark/working_dir/main:62148/DARC_sampling_on_the_fly/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_sampling_on_the_fly/log /home/benchmark/working_dir/main:62148/DARC_sampling_on_the_fly/log 8c8 < core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents. 11c11 < core.import_pose.import_pose: File 'input/00K_conformers.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/00K_conformers.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.DARC_shapeonly 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/DARC_shapeonly/log and /home/benchmark/working_dir/main:62148/DARC_shapeonly/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_shapeonly/log /home/benchmark/working_dir/main:62148/DARC_shapeonly/log 8c8 < core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents. 11c11 < core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.DumpTrajectoryEnergy 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy/log and /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy/log /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy/log 14c14 < core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.DumpTrajectoryEnergy_packing 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy_packing/log and /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy_packing/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy_packing/log /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy_packing/log 14c14 < core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.Enzrevert_xml 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/Enzrevert_xml/log and /home/benchmark/working_dir/main:62148/Enzrevert_xml/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/Enzrevert_xml/log /home/benchmark/working_dir/main:62148/Enzrevert_xml/log 16c16 < core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'inputs/1kux_rlxed_design30.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1kux_rlxed_design30.pdb' automatically determined to be of type PDB from contents. 81c81 < core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents. 115c115 < core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents. 136c136 < core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.FavorSequenceProfileMover 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/FavorSequenceProfileMover/log and /home/benchmark/working_dir/main:62148/FavorSequenceProfileMover/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/FavorSequenceProfileMover/log /home/benchmark/working_dir/main:62148/FavorSequenceProfileMover/log 11c11 < core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents. 15c15 < core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents. 55c55 < core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents. 94c94 < core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents. 97c97 < core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.FilterReportAsPoseExtraScoresMover 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/FilterReportAsPoseExtraScoresMover/log and /home/benchmark/working_dir/main:62148/FilterReportAsPoseExtraScoresMover/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/FilterReportAsPoseExtraScoresMover/log /home/benchmark/working_dir/main:62148/FilterReportAsPoseExtraScoresMover/log 14c14 < core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.FloppyTail 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/FloppyTail/log and /home/benchmark/working_dir/main:62148/FloppyTail/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/FloppyTail/log /home/benchmark/working_dir/main:62148/FloppyTail/log 43c43 < core.import_pose.import_pose: File 'complex_readytail_final_nozn.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'complex_readytail_final_nozn.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.HDXEnergy 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/HDXEnergy/log and /home/benchmark/working_dir/main:62148/HDXEnergy/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/HDXEnergy/log /home/benchmark/working_dir/main:62148/HDXEnergy/log 8c8 < core.import_pose.import_pose: File '1a2p_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1a2p_A.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.default and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.default differ Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.rs and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.rs differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.default /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.default 35c35 < core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.rs /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.rs 14c14 < core.import_pose.import_pose: File '1KX5_chAB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1KX5_chAB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer_allscores 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_allscores/log.allscores and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_allscores/log.allscores differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_allscores/log.allscores /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_allscores/log.allscores 35c35 < core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer_bothpack 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_bothpack/log.bothpack and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_bothpack/log.bothpack differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_bothpack/log.bothpack /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_bothpack/log.bothpack 35c35 < core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer_ligand 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_ligand/log.default and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_ligand/log.default differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_ligand/log.default /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_ligand/log.default 35c35 < core.import_pose.import_pose: File 'min_renumbered_AHo.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'min_renumbered_AHo.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer_metrics 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_metrics/log.rs and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_metrics/log.rs differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_metrics/log.rs /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_metrics/log.rs 14c14 < core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/InterfaceAnalyzer/1KX5_chAB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/InterfaceAnalyzer/1KX5_chAB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer_prepack 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_prepack/log.prepack and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_prepack/log.prepack differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_prepack/log.prepack /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_prepack/log.prepack 35c35 < core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer_resfile 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_resfile/log.resfile and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_resfile/log.resfile differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_resfile/log.resfile /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_resfile/log.resfile 35c35 < core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceAnalyzer_tracer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_tracer/log.tracer and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_tracer/log.tracer differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_tracer/log.tracer /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_tracer/log.tracer 35c35 < core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.InterfaceDdG 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/InterfaceDdG/log_db_output and /home/benchmark/working_dir/main:62148/InterfaceDdG/log_db_output differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceDdG/log_db_output /home/benchmark/working_dir/main:62148/InterfaceDdG/log_db_output 14c14 < core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB from contents. 85c85 < core.import_pose.import_pose: File '3fod_mutated.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3fod_mutated.pdb' automatically determined to be of type PDB from contents. 208c208 < core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB from contents. 270c270 < core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.KIC_refine 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/KIC_refine/log and /home/benchmark/working_dir/main:62148/KIC_refine/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/KIC_refine/log /home/benchmark/working_dir/main:62148/KIC_refine/log 43c43 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 66c66 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.KIC_vicinity 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/KIC_vicinity/log and /home/benchmark/working_dir/main:62148/KIC_vicinity/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/KIC_vicinity/log /home/benchmark/working_dir/main:62148/KIC_vicinity/log 43c43 < core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents. 73c73 < core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents. 84c84 < core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents. 103c103 < core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents. 114c114 < core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.KIC_with_fragments 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/KIC_with_fragments/log and /home/benchmark/working_dir/main:62148/KIC_with_fragments/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/KIC_with_fragments/log /home/benchmark/working_dir/main:62148/KIC_with_fragments/log 54c54 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 63c63 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 65c65 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 75c75 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 77c77 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 85c85 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 87c87 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents. 178c178 < core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.LoopAnalyzer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_file and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_file differ Files /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_tag and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_tag differ Files /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_file and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_file differ Files /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_tag and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_tag differ Files /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LoopAnalyzer_pilot and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LoopAnalyzer_pilot differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_file /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_file 14c14 < core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_tag /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_tag 14c14 < core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_file /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_file 14c14 < core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_tag /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_tag 14c14 < core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LoopAnalyzer_pilot /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LoopAnalyzer_pilot 35c35 < core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.LoopLengthChange 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/LoopLengthChange/log and /home/benchmark/working_dir/main:62148/LoopLengthChange/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopLengthChange/log /home/benchmark/working_dir/main:62148/LoopLengthChange/log 14c14 < core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.PDB_diagnostic 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/PDB_diagnostic/log and /home/benchmark/working_dir/main:62148/PDB_diagnostic/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/PDB_diagnostic/log /home/benchmark/working_dir/main:62148/PDB_diagnostic/log 33c33 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cym.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cym.pdb.gz' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy2.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy2.pdb.gz' automatically determined to be of type PDB from contents. 65c65 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyh.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyh.pdb.gz' automatically determined to be of type PDB from contents. 77c77 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyu.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyu.pdb.gz' automatically determined to be of type PDB from contents. 82c82 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyj.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyj.pdb.gz' automatically determined to be of type PDB from contents. 171c171 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyg.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyg.pdb.gz' automatically determined to be of type PDB from contents. 250c250 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyi.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyi.pdb.gz' automatically determined to be of type PDB from contents. 256c256 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyv.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyv.pdb.gz' automatically determined to be of type PDB from contents. 261c261 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyr.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyr.pdb.gz' automatically determined to be of type PDB from contents. 356c356 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy6.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy6.pdb.gz' automatically determined to be of type PDB from contents. 362c362 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyk.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyk.pdb.gz' automatically determined to be of type PDB from contents. 371c371 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyf.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyf.pdb.gz' automatically determined to be of type PDB from contents. 382c382 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyp.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyp.pdb.gz' automatically determined to be of type PDB from contents. 403c403 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyo.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyo.pdb.gz' automatically determined to be of type PDB from contents. 410c410 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyy.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyy.pdb.gz' automatically determined to be of type PDB from contents. 437c437 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyq.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyq.pdb.gz' automatically determined to be of type PDB from contents. 522c522 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy3.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy3.pdb.gz' automatically determined to be of type PDB from contents. 554c554 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyl.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyl.pdb.gz' automatically determined to be of type PDB from contents. 592c592 < core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyz.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyz.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ProQ 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ProQ/log and /home/benchmark/working_dir/main:62148/ProQ/log differ Files /home/benchmark/working_dir/main:62147/ProQ/log.membrane and /home/benchmark/working_dir/main:62148/ProQ/log.membrane differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ProQ/log /home/benchmark/working_dir/main:62148/ProQ/log 57c57 < core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ProQ/log.membrane /home/benchmark/working_dir/main:62148/ProQ/log.membrane 305c305 < core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents. 307c307 < core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.RBOut 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/RBOut/log and /home/benchmark/working_dir/main:62148/RBOut/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/RBOut/log /home/benchmark/working_dir/main:62148/RBOut/log 12c12 < core.import_pose.import_pose: File '1AHW_vl_vh.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1AHW_vl_vh.pdb' automatically determined to be of type PDB from contents. 140c140 < core.import_pose.import_pose: File '1AHW_2BRR.ppk_ideal_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1AHW_2BRR.ppk_ideal_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.RescorePDDF 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/RescorePDDF/log_PDDF and /home/benchmark/working_dir/main:62148/RescorePDDF/log_PDDF differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/RescorePDDF/log_PDDF /home/benchmark/working_dir/main:62148/RescorePDDF/log_PDDF 32c32 < core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB from contents. 34c34 < core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ResidueDisorder 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ResidueDisorder/log and /home/benchmark/working_dir/main:62148/ResidueDisorder/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ResidueDisorder/log /home/benchmark/working_dir/main:62148/ResidueDisorder/log 9,13c9,13 < core.import_pose.import_pose: File './inputs/1aj3_0001.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/1aj3_0002.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/1aj3_0003.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/1aj3_0004.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/1aj3_0005.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/1aj3_0001.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/1aj3_0002.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/1aj3_0003.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/1aj3_0004.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/1aj3_0005.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.RunSimpleMetric_b_factor_test 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/RunSimpleMetric_b_factor_test/log and /home/benchmark/working_dir/main:62148/RunSimpleMetric_b_factor_test/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/RunSimpleMetric_b_factor_test/log /home/benchmark/working_dir/main:62148/RunSimpleMetric_b_factor_test/log 14c14 < core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.SID_ERMS_prediction 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/SID_ERMS_prediction/log and /home/benchmark/working_dir/main:62148/SID_ERMS_prediction/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SID_ERMS_prediction/log /home/benchmark/working_dir/main:62148/SID_ERMS_prediction/log 18c18 < core.import_pose.import_pose: File './inputs/relax_1swb_ABCD_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/relax_1swb_ABCD_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.SID_rescore 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/SID_rescore/log and /home/benchmark/working_dir/main:62148/SID_rescore/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SID_rescore/log /home/benchmark/working_dir/main:62148/SID_rescore/log 8c8 < core.import_pose.import_pose: File './1fgb_D_E_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './1fgb_D_E_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.SSElementSelector 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/SSElementSelector/log and /home/benchmark/working_dir/main:62148/SSElementSelector/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SSElementSelector/log /home/benchmark/working_dir/main:62148/SSElementSelector/log 14c14 < core.import_pose.import_pose: File 'inputs/start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.SnugDock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/SnugDock/log and /home/benchmark/working_dir/main:62148/SnugDock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SnugDock/log /home/benchmark/working_dir/main:62148/SnugDock/log 14c14 < core.import_pose.import_pose: File 'input/aaFR02_54569_ppk.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/aaFR02_54569_ppk.pdb' automatically determined to be of type PDB from contents. 2320,2321c2320,2321 < core.import_pose.import_pose: File 'input/ab1.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/ab2.pdb.ppk' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/ab1.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/ab2.pdb.ppk' automatically determined to be of type PDB from contents. 2326,2327c2326,2327 < core.import_pose.import_pose: File 'input/ag1.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/ag2.pdb.ppk' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/ag1.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/ag2.pdb.ppk' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ThreadingInputter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ThreadingInputter/log and /home/benchmark/working_dir/main:62148/ThreadingInputter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ThreadingInputter/log /home/benchmark/working_dir/main:62148/ThreadingInputter/log 1313c1313 < core.import_pose.import_pose: File 'input/1vyhA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1vyhA.pdb' automatically determined to be of type PDB from contents. 9346c9346 < core.import_pose.import_pose: File 'input/1fxwF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1fxwF.pdb' automatically determined to be of type PDB from contents. 17158c17158 < core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.UBQ_E2_thioester 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/UBQ_E2_thioester/log and /home/benchmark/working_dir/main:62148/UBQ_E2_thioester/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_E2_thioester/log /home/benchmark/working_dir/main:62148/UBQ_E2_thioester/log 37c37 < core.import_pose.import_pose: File '2OB4_trimmed.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2OB4_trimmed.pdb.gz' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.UBQ_E2_thioester_extra_bodies 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_extra_bodies/log and /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_extra_bodies/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_extra_bodies/log /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_extra_bodies/log 62c62 < core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB from contents. 67c67 < core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB from contents. 70,71c70,71 < core.import_pose.import_pose: File 'Cul1.pdb.gz' automatically determined to be of type PDB < core.import_pose.import_pose: File 'RING.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'Cul1.pdb.gz' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'RING.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.UBQ_E2_thioester_two_ubiquitins 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_two_ubiquitins/log and /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_two_ubiquitins/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_two_ubiquitins/log /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_two_ubiquitins/log 62c62 < core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB from contents. 67c67 < core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.UBQ_Gp_CYD-CYD 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/UBQ_Gp_CYD-CYD/log_CYD and /home/benchmark/working_dir/main:62148/UBQ_Gp_CYD-CYD/log_CYD differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_Gp_CYD-CYD/log_CYD /home/benchmark/working_dir/main:62148/UBQ_Gp_CYD-CYD/log_CYD 38,39c38,39 < core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB < core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.UBQ_Gp_LYX-Cterm 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/UBQ_Gp_LYX-Cterm/log_LYX and /home/benchmark/working_dir/main:62148/UBQ_Gp_LYX-Cterm/log_LYX differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_Gp_LYX-Cterm/log_LYX /home/benchmark/working_dir/main:62148/UBQ_Gp_LYX-Cterm/log_LYX 42c42 < core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.abinitio 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/abinitio/log and /home/benchmark/working_dir/main:62148/abinitio/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/abinitio/log /home/benchmark/working_dir/main:62148/abinitio/log 8c8 < core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents. 12c12 < core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.add_helix_sequence_constraints 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints/log1 and /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints/log1 /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints/log1 38c38 < core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents. 350c350 < core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents. 537c537 < core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.add_helix_sequence_constraints_advanced_setup 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints_advanced_setup/log1 and /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints_advanced_setup/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints_advanced_setup/log1 /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints_advanced_setup/log1 38c38 < core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents. 346c346 < core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents. 528c528 < core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.add_job_pair_data 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/add_job_pair_data/log and /home/benchmark/working_dir/main:62148/add_job_pair_data/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/add_job_pair_data/log /home/benchmark/working_dir/main:62148/add_job_pair_data/log 14c14 < core.import_pose.import_pose: File '1ubi.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ubi.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ambiguous_nmr_distance_constraint 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ambiguous_nmr_distance_constraint/log and /home/benchmark/working_dir/main:62148/ambiguous_nmr_distance_constraint/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ambiguous_nmr_distance_constraint/log /home/benchmark/working_dir/main:62148/ambiguous_nmr_distance_constraint/log 14c14 < core.import_pose.import_pose: File 'inputs/6VLJ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/6VLJ.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.angle_recovery_stats 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/angle_recovery_stats/log and /home/benchmark/working_dir/main:62148/angle_recovery_stats/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/angle_recovery_stats/log /home/benchmark/working_dir/main:62148/angle_recovery_stats/log 10c10 < core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.antibody_H3 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/antibody_H3/log and /home/benchmark/working_dir/main:62148/antibody_H3/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_H3/log /home/benchmark/working_dir/main:62148/antibody_H3/log 10c10 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents. 84c84 < core.import_pose.import_pose: File './inputs/FR02.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/FR02.pdb' automatically determined to be of type PDB from contents. 157c157 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents. 160c160 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents. 163c163 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents. 388c388 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents. 391c391 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents. 394c394 < core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.antibody_H3_camelid 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/antibody_H3_camelid/log and /home/benchmark/working_dir/main:62148/antibody_H3_camelid/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_H3_camelid/log /home/benchmark/working_dir/main:62148/antibody_H3_camelid/log 10c10 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents. 77c77 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents. 82c82 < core.import_pose.import_pose: File './inputs/FR02_H.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/FR02_H.pdb' automatically determined to be of type PDB from contents. 128c128 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents. 130c130 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents. 132c132 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents. 193c193 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents. 195c195 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents. 197c197 < core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.antibody_designer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/antibody_designer/log and /home/benchmark/working_dir/main:62148/antibody_designer/log differ Files /home/benchmark/working_dir/main:62147/antibody_designer/log2 and /home/benchmark/working_dir/main:62148/antibody_designer/log2 differ Files /home/benchmark/working_dir/main:62147/antibody_designer/log_nanobody and /home/benchmark/working_dir/main:62148/antibody_designer/log_nanobody differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer/log /home/benchmark/working_dir/main:62148/antibody_designer/log 15c15 < core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer/log2 /home/benchmark/working_dir/main:62148/antibody_designer/log2 16c16 < core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer/log_nanobody /home/benchmark/working_dir/main:62148/antibody_designer/log_nanobody 15c15 < core.import_pose.import_pose: File 'mis_nanobody.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mis_nanobody.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.antibody_designer_camelid 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/antibody_designer_camelid/log and /home/benchmark/working_dir/main:62148/antibody_designer_camelid/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer_camelid/log /home/benchmark/working_dir/main:62148/antibody_designer_camelid/log 15c15 < core.import_pose.import_pose: File 'camelid_design_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'camelid_design_test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.antibody_designer_xml 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/antibody_designer_xml/log and /home/benchmark/working_dir/main:62148/antibody_designer_xml/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer_xml/log /home/benchmark/working_dir/main:62148/antibody_designer_xml/log 14c14 < core.import_pose.import_pose: File 'my_ab.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'my_ab.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.antibody_graft 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/antibody_graft/log and /home/benchmark/working_dir/main:62148/antibody_graft/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_graft/log /home/benchmark/working_dir/main:62148/antibody_graft/log 10c10 < core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'FR.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FR.pdb' automatically determined to be of type PDB from contents. 83c83 < core.import_pose.import_pose: File './L1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './L1.pdb' automatically determined to be of type PDB from contents. 105c105 < core.import_pose.import_pose: File './L2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './L2.pdb' automatically determined to be of type PDB from contents. 124c124 < core.import_pose.import_pose: File './L3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './L3.pdb' automatically determined to be of type PDB from contents. 126c126 < core.import_pose.import_pose: File './H1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './H1.pdb' automatically determined to be of type PDB from contents. 134c134 < core.import_pose.import_pose: File './H2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './H2.pdb' automatically determined to be of type PDB from contents. 136c136 < core.import_pose.import_pose: File './H3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './H3.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.antibody_numbering_converter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/antibody_numbering_converter/log and /home/benchmark/working_dir/main:62148/antibody_numbering_converter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_numbering_converter/log /home/benchmark/working_dir/main:62148/antibody_numbering_converter/log 14c14 < core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.assemble_domains_jd2 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/assemble_domains_jd2/log and /home/benchmark/working_dir/main:62148/assemble_domains_jd2/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/assemble_domains_jd2/log /home/benchmark/working_dir/main:62148/assemble_domains_jd2/log 49c49 < core.import_pose.import_pose: File 'input/dock_start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/dock_start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.auto-drrafter_setup_run_R1 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R1/log and /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R1/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R1/log /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R1/log 28c28 < core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents. 30c30 < core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents. 55c55 < core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents. 200c200 < core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents. 202c202 < core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents. 225c225 < core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents. 227c227 < core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents. 372c372 < core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents. 374c374 < core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents. 397c397 < core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents. 399c399 < core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents. 541c541 < core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents. 543c543 < core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents. 566c566 < core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents. 568c568 < core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.auto-drrafter_setup_run_R2 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R2/log and /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R2/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R2/log /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R2/log 20c20 < core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. 22,25c22,25 < core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. 50,53c50,53 < core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents. 228c228 < core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. 230,233c230,233 < core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents. 256c256 < core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. 258,261c258,261 < core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.auto-drrafter_setup_run_R3 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R3/log and /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R3/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R3/log /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R3/log 20c20 < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents. 188c188 < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents. 211c211 < core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.autosetup_metals_centroid 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/autosetup_metals_centroid/log and /home/benchmark/working_dir/main:62148/autosetup_metals_centroid/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/autosetup_metals_centroid/log /home/benchmark/working_dir/main:62148/autosetup_metals_centroid/log 14c14 < core.import_pose.import_pose: File 'input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.backrub 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/backrub/log_advanced and /home/benchmark/working_dir/main:62148/backrub/log_advanced differ Files /home/benchmark/working_dir/main:62147/backrub/log_basic and /home/benchmark/working_dir/main:62148/backrub/log_basic differ Files /home/benchmark/working_dir/main:62147/backrub/log_movemap and /home/benchmark/working_dir/main:62148/backrub/log_movemap differ Files /home/benchmark/working_dir/main:62147/backrub/log_xml and /home/benchmark/working_dir/main:62148/backrub/log_xml differ Files /home/benchmark/working_dir/main:62147/backrub/log_xml_mmf and /home/benchmark/working_dir/main:62148/backrub/log_xml_mmf differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_advanced /home/benchmark/working_dir/main:62148/backrub/log_advanced 16c16 < core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_basic /home/benchmark/working_dir/main:62148/backrub/log_basic 16c16 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_movemap /home/benchmark/working_dir/main:62148/backrub/log_movemap 16c16 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_xml /home/benchmark/working_dir/main:62148/backrub/log_xml 14c14 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_xml_mmf /home/benchmark/working_dir/main:62148/backrub/log_xml_mmf 14c14 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.backrub_interface_ddG 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/backrub_interface_ddG/log_output and /home/benchmark/working_dir/main:62148/backrub_interface_ddG/log_output differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_interface_ddG/log_output /home/benchmark/working_dir/main:62148/backrub_interface_ddG/log_output 14c14 < core.import_pose.import_pose: File '2LVO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2LVO.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.backrub_pilot 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/backrub_pilot/log_advanced and /home/benchmark/working_dir/main:62148/backrub_pilot/log_advanced differ Files /home/benchmark/working_dir/main:62147/backrub_pilot/log_basic and /home/benchmark/working_dir/main:62148/backrub_pilot/log_basic differ Files /home/benchmark/working_dir/main:62147/backrub_pilot/log_detailed_balance and /home/benchmark/working_dir/main:62148/backrub_pilot/log_detailed_balance differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_pilot/log_advanced /home/benchmark/working_dir/main:62148/backrub_pilot/log_advanced 34c34 < core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_pilot/log_basic /home/benchmark/working_dir/main:62148/backrub_pilot/log_basic 34c34 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_pilot/log_detailed_balance /home/benchmark/working_dir/main:62148/backrub_pilot/log_detailed_balance 34c34 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.balancedKIC 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/balancedKIC/log_loops and /home/benchmark/working_dir/main:62148/balancedKIC/log_loops differ Files /home/benchmark/working_dir/main:62147/balancedKIC/log_xml and /home/benchmark/working_dir/main:62148/balancedKIC/log_xml differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/balancedKIC/log_loops /home/benchmark/working_dir/main:62148/balancedKIC/log_loops 14c14 < core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/balancedKIC/log_xml /home/benchmark/working_dir/main:62148/balancedKIC/log_xml 14c14 < core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.batch_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/batch_relax/log and /home/benchmark/working_dir/main:62148/batch_relax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/batch_relax/log /home/benchmark/working_dir/main:62148/batch_relax/log 10c10 < core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents. 394c394 < core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents. 755c755 < core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents. 1116c1116 < core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.beta_strand_homodimer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/beta_strand_homodimer/homodimer_design.log and /home/benchmark/working_dir/main:62148/beta_strand_homodimer/homodimer_design.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/beta_strand_homodimer/homodimer_design.log /home/benchmark/working_dir/main:62148/beta_strand_homodimer/homodimer_design.log 21c21 < core.import_pose.import_pose: File '2a7b_mpm_A806_anti_wind_1_step_1_INPUT.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2a7b_mpm_A806_anti_wind_1_step_1_INPUT.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.binselector 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/binselector/log and /home/benchmark/working_dir/main:62148/binselector/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/binselector/log /home/benchmark/working_dir/main:62148/binselector/log 38c38 < core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.binselector_probins 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/binselector_probins/log and /home/benchmark/working_dir/main:62148/binselector_probins/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/binselector_probins/log /home/benchmark/working_dir/main:62148/binselector_probins/log 38c38 < core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.broker 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/broker/log and /home/benchmark/working_dir/main:62148/broker/log differ Files /home/benchmark/working_dir/main:62147/broker/log2 and /home/benchmark/working_dir/main:62148/broker/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/broker/log /home/benchmark/working_dir/main:62148/broker/log 317c317 < core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/broker/log2 /home/benchmark/working_dir/main:62148/broker/log2 316c316 < core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.broker_membrane 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/broker_membrane/log and /home/benchmark/working_dir/main:62148/broker_membrane/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/broker_membrane/log /home/benchmark/working_dir/main:62148/broker_membrane/log 59c59 < core.import_pose.import_pose: File 'input/native/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.buried_unsat_kinemage 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/buried_unsat_kinemage/log and /home/benchmark/working_dir/main:62148/buried_unsat_kinemage/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/buried_unsat_kinemage/log /home/benchmark/working_dir/main:62148/buried_unsat_kinemage/log 8c8 < core.import_pose.import_pose: File '../../tests/UBQ_E2_thioester/1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/UBQ_E2_thioester/1UBQ.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.buried_unsat_voids_hbnet_design_symm 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/buried_unsat_voids_hbnet_design_symm/log and /home/benchmark/working_dir/main:62148/buried_unsat_voids_hbnet_design_symm/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/buried_unsat_voids_hbnet_design_symm/log /home/benchmark/working_dir/main:62148/buried_unsat_voids_hbnet_design_symm/log 37c37 < core.import_pose.import_pose: File 'inputs/S_4207.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/S_4207.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.c-term_conjugation 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/c-term_conjugation/log and /home/benchmark/working_dir/main:62148/c-term_conjugation/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/c-term_conjugation/log /home/benchmark/working_dir/main:62148/c-term_conjugation/log 8c8 < core.import_pose.import_pose: File 'input/test_normal1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_normal1.pdb' automatically determined to be of type PDB from contents. 10,11c10,11 < core.import_pose.import_pose: File 'input/test_c_conj1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/UBQ_E2_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_c_conj1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/UBQ_E2_0001.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File 'input/UBQ_E2_0003.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/UBQ_E2_0003.pdb' automatically determined to be of type PDB from contents. 24c24 < core.import_pose.import_pose: File 'input/test_O_glycan.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_O_glycan.pdb' automatically determined to be of type PDB from contents. 33c33 < core.import_pose.import_pose: File 'input/test_O_glycan_centroid.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_O_glycan_centroid.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.calculate_sasa 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/calculate_sasa/log and /home/benchmark/working_dir/main:62148/calculate_sasa/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/calculate_sasa/log /home/benchmark/working_dir/main:62148/calculate_sasa/log 8c8 < core.import_pose.import_pose: File 'tripeptide.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'tripeptide.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cart_min_glycans 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cart_min_glycans/info.log and /home/benchmark/working_dir/main:62148/cart_min_glycans/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cart_min_glycans/info.log /home/benchmark/working_dir/main:62148/cart_min_glycans/info.log 15c15 < core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents. 458c458 < core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cartesianddg 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cartesianddg/log and /home/benchmark/working_dir/main:62148/cartesianddg/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cartesianddg/log /home/benchmark/working_dir/main:62148/cartesianddg/log 8c8 < core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ccd_ends_graft_mover_rs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log and /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log differ Files /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log_crystal and /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log_crystal differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log 14c14 < core.import_pose.import_pose: File '1ahw_m.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ahw_m.pdb' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log_crystal /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log_crystal 14c14 < core.import_pose.import_pose: File '1ahw_crystal_antigen.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ahw_crystal_antigen.pdb' automatically determined to be of type PDB from contents. 117c117 < core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.centroid_disulfide_scores 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/centroid_disulfide_scores/fa.log and /home/benchmark/working_dir/main:62148/centroid_disulfide_scores/fa.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_disulfide_scores/fa.log /home/benchmark/working_dir/main:62148/centroid_disulfide_scores/fa.log 43c43 < core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.centroid_from_fullatom 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_components and /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_components differ Files /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_sdf and /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_sdf differ Files /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_switch and /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_switch differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_components /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_components 24c24 < core.import_pose.import_pose: File '3N0G_trim.pdb XST_cif.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3N0G_trim.pdb XST_cif.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_sdf /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_sdf 27c27 < core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_switch /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_switch 14c14 < core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cl_complex_rescore 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cl_complex_rescore/log and /home/benchmark/working_dir/main:62148/cl_complex_rescore/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cl_complex_rescore/log /home/benchmark/working_dir/main:62148/cl_complex_rescore/log 11c11 < core.import_pose.import_pose: File './1yag_AG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './1yag_AG.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.classic_relax_1a19 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/classic_relax_1a19/log and /home/benchmark/working_dir/main:62148/classic_relax_1a19/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/classic_relax_1a19/log /home/benchmark/working_dir/main:62148/classic_relax_1a19/log 36c36 < core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cleanAlignment 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cleanAlignment/log and /home/benchmark/working_dir/main:62148/cleanAlignment/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cleanAlignment/log /home/benchmark/working_dir/main:62148/cleanAlignment/log 35c35 < core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cluster_alns 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cluster_alns/log and /home/benchmark/working_dir/main:62148/cluster_alns/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cluster_alns/log /home/benchmark/working_dir/main:62148/cluster_alns/log 8c8 < core.import_pose.import_pose: File 'input/1nqlA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1nqlA.pdb' automatically determined to be of type PDB from contents. 194c194 < core.import_pose.import_pose: File 'input/1rxqA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1rxqA.pdb' automatically determined to be of type PDB from contents. 196c196 < core.import_pose.import_pose: File 'input/1yy9A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1yy9A.pdb' automatically determined to be of type PDB from contents. 310c310 < core.import_pose.import_pose: File 'input/2f22A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2f22A.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cmaes_minimizer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cmaes_minimizer/log and /home/benchmark/working_dir/main:62148/cmaes_minimizer/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cmaes_minimizer/log /home/benchmark/working_dir/main:62148/cmaes_minimizer/log 8c8 < core.import_pose.import_pose: File 'ALA10_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ALA10_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.combine_silent 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/combine_silent/log and /home/benchmark/working_dir/main:62148/combine_silent/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/combine_silent/log /home/benchmark/working_dir/main:62148/combine_silent/log 9c9 < core.import_pose.import_pose: File 'inputs/1ubi.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1ubi.pdb' automatically determined to be of type PDB from contents. 370c370 < core.import_pose.import_pose: File 'inputs/S_0043_8119.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/S_0043_8119.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.constel 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/constel/log and /home/benchmark/working_dir/main:62148/constel/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/constel/log /home/benchmark/working_dir/main:62148/constel/log 14c14 < core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.constraints_metric 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/constraints_metric/out1.log and /home/benchmark/working_dir/main:62148/constraints_metric/out1.log differ Files /home/benchmark/working_dir/main:62147/constraints_metric/out2.log and /home/benchmark/working_dir/main:62148/constraints_metric/out2.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/constraints_metric/out1.log /home/benchmark/working_dir/main:62148/constraints_metric/out1.log 14c14 < core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/constraints_metric/out2.log /home/benchmark/working_dir/main:62148/constraints_metric/out2.log 14c14 < core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.contactMap 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/contactMap/log_lig and /home/benchmark/working_dir/main:62148/contactMap/log_lig differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/contactMap/log_lig /home/benchmark/working_dir/main:62148/contactMap/log_lig 8,9c8,9 < core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.control_flow_rs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_one.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_one.log differ Files /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_three.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_three.log differ Files /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_two.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_two.log differ Files /home/benchmark/working_dir/main:62147/control_flow_rs/test_sequence_mover.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_sequence_mover.log differ Files /home/benchmark/working_dir/main:62147/control_flow_rs/val_test.log and /home/benchmark/working_dir/main:62148/control_flow_rs/val_test.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_one.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_one.log 14c14 < core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_three.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_three.log 14c14 < core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_two.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_two.log 14c14 < core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_sequence_mover.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_sequence_mover.log 14c14 < core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/val_test.log /home/benchmark/working_dir/main:62148/control_flow_rs/val_test.log 14c14 < core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.coupled_moves 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/coupled_moves/log_ligand and /home/benchmark/working_dir/main:62148/coupled_moves/log_ligand differ Files /home/benchmark/working_dir/main:62147/coupled_moves/log_no_ligand and /home/benchmark/working_dir/main:62148/coupled_moves/log_no_ligand differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/coupled_moves/log_ligand /home/benchmark/working_dir/main:62148/coupled_moves/log_ligand 20c20 < core.import_pose.import_pose: File 'input/1ZK4_ligand.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1ZK4_ligand.pdb.gz' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/coupled_moves/log_no_ligand /home/benchmark/working_dir/main:62148/coupled_moves/log_no_ligand 20c20 < core.import_pose.import_pose: File 'input/1ZK4_no_ligand.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1ZK4_no_ligand.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.create_clash-based_repack_shell 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/create_clash-based_repack_shell/log and /home/benchmark/working_dir/main:62148/create_clash-based_repack_shell/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/create_clash-based_repack_shell/log /home/benchmark/working_dir/main:62148/create_clash-based_repack_shell/log 29c29 < core.import_pose.import_pose: File '2ykl.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ykl.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.create_sequence_motif 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/create_sequence_motif/log and /home/benchmark/working_dir/main:62148/create_sequence_motif/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/create_sequence_motif/log /home/benchmark/working_dir/main:62148/create_sequence_motif/log 14c14 < core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.crosslinkermover_tetrahedral_metal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal/log and /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal/log /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal/log 14c14 < core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.crosslinkermover_tetrahedral_metal_asp 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal_asp/log and /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal_asp/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal_asp/log /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal_asp/log 14c14 < core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cs_rosetta_rna 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cs_rosetta_rna/log and /home/benchmark/working_dir/main:62148/cs_rosetta_rna/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cs_rosetta_rna/log /home/benchmark/working_dir/main:62148/cs_rosetta_rna/log 105c105 < core.import_pose.import_pose: File '1MIS_NMR.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1MIS_NMR.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cst_info 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cst_info/log_rosetta_scripts and /home/benchmark/working_dir/main:62148/cst_info/log_rosetta_scripts differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cst_info/log_rosetta_scripts /home/benchmark/working_dir/main:62148/cst_info/log_rosetta_scripts 14c14 < core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cstfile_to_theozyme_pdb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cstfile_to_theozyme_pdb/log and /home/benchmark/working_dir/main:62148/cstfile_to_theozyme_pdb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cstfile_to_theozyme_pdb/log /home/benchmark/working_dir/main:62148/cstfile_to_theozyme_pdb/log 104c104 < core.import_pose.import_pose: File 'inputs/dummy_align_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/dummy_align_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.custom_basetype_packer_palette 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/custom_basetype_packer_palette/log and /home/benchmark/working_dir/main:62148/custom_basetype_packer_palette/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/custom_basetype_packer_palette/log /home/benchmark/working_dir/main:62148/custom_basetype_packer_palette/log 14c14 < core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cyclization 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cyclization/log_cyclize and /home/benchmark/working_dir/main:62148/cyclization/log_cyclize differ Files /home/benchmark/working_dir/main:62147/cyclization/log_cyclize_peptoid and /home/benchmark/working_dir/main:62148/cyclization/log_cyclize_peptoid differ Files /home/benchmark/working_dir/main:62147/cyclization/log_relax and /home/benchmark/working_dir/main:62148/cyclization/log_relax differ Files /home/benchmark/working_dir/main:62147/cyclization/log_relax_nocst and /home/benchmark/working_dir/main:62148/cyclization/log_relax_nocst differ Files /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid and /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid differ Files /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid_nocst and /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid_nocst differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_cyclize /home/benchmark/working_dir/main:62148/cyclization/log_cyclize 8911c8911 < core.import_pose.import_pose: File '1e68.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1e68.pdb' automatically determined to be of type PDB from contents. 22692d22691 < basic.io.database: Using 'ROSETTA/.database-binaries/macclangrelease/rotamer/shapovalov/StpDwn_0-0-0/' as a cache directory. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_cyclize_peptoid /home/benchmark/working_dir/main:62148/cyclization/log_cyclize_peptoid 15c15 < core.import_pose.import_pose: File 'peptoid.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'peptoid.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax /home/benchmark/working_dir/main:62148/cyclization/log_relax 60c60 < core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax_nocst /home/benchmark/working_dir/main:62148/cyclization/log_relax_nocst 60c60 < core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid 52c52 < core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid_nocst /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid_nocst 52c52 < core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cycpep_design_pipeline 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cycpep_design_pipeline/log1 and /home/benchmark/working_dir/main:62148/cycpep_design_pipeline/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_design_pipeline/log1 /home/benchmark/working_dir/main:62148/cycpep_design_pipeline/log1 14c14 < core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cycpep_rdkit_metric 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cycpep_rdkit_metric/log1 and /home/benchmark/working_dir/main:62148/cycpep_rdkit_metric/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_rdkit_metric/log1 /home/benchmark/working_dir/main:62148/cycpep_rdkit_metric/log1 14c14 < core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cycpep_rigid_body_permutation_mover 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cycpep_rigid_body_permutation_mover/out.log and /home/benchmark/working_dir/main:62148/cycpep_rigid_body_permutation_mover/out.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_rigid_body_permutation_mover/out.log /home/benchmark/working_dir/main:62148/cycpep_rigid_body_permutation_mover/out.log 14c14 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 173c173 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 256c256 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 339c339 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 422c422 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 505c505 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 588c588 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 671c671 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 754c754 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 837c837 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 920c920 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1003c1003 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1086c1086 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1169c1169 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1252c1252 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1335c1335 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1418c1418 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1501c1501 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1584c1584 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1667c1667 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1750c1750 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1833c1833 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1916c1916 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 1999c1999 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2082c2082 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2165c2165 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2248c2248 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2331c2331 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2414c2414 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2497c2497 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2580c2580 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2663c2663 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2746c2746 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2829c2829 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2912c2912 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 2995c2995 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3078c3078 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3161c3161 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3244c3244 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3327c3327 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3410c3410 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3493c3493 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3576c3576 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3659c3659 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3742c3742 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3825c3825 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3908c3908 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 3991c3991 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4074c4074 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4157c4157 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4240c4240 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4323c4323 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4406c4406 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4489c4489 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4572c4572 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4655c4655 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4738c4738 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4821c4821 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4904c4904 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 4987c4987 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 5070c5070 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 5153c5153 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 5236c5236 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents. 5319c5319 < core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.cycpep_symmetry_filter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log1 and /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log1 differ Files /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log2 and /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log1 /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log1 39c39 < core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB from contents. 122c122 < core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB from contents. 173c173 < core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log2 /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log2 39c39 < core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB from contents. 122c122 < core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB from contents. 167c167 < core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.database_jd2_compact_io 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/database_jd2_compact_io/test_output.log and /home/benchmark/working_dir/main:62148/database_jd2_compact_io/test_output.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/database_jd2_compact_io/test_output.log /home/benchmark/working_dir/main:62148/database_jd2_compact_io/test_output.log 108c108 < core.import_pose.import_pose: File '7cpa_7cpa_input.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '7cpa_7cpa_input.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.database_jd2_io 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/database_jd2_io/test_output.log and /home/benchmark/working_dir/main:62148/database_jd2_io/test_output.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/database_jd2_io/test_output.log /home/benchmark/working_dir/main:62148/database_jd2_io/test_output.log 108c108 < core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.database_session_resource 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/database_session_resource/log and /home/benchmark/working_dir/main:62148/database_session_resource/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/database_session_resource/log /home/benchmark/working_dir/main:62148/database_session_resource/log 9c9 < core.import_pose.import_pose: File '1xu1FH_D.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1xu1FH_D.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ddG_ensemble 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ddG_ensemble/log and /home/benchmark/working_dir/main:62148/ddG_ensemble/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ddG_ensemble/log /home/benchmark/working_dir/main:62148/ddG_ensemble/log 30c30 < core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ddG_of_mutation 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ddG_of_mutation/log and /home/benchmark/working_dir/main:62148/ddG_of_mutation/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ddG_of_mutation/log /home/benchmark/working_dir/main:62148/ddG_of_mutation/log 8899c8899 < core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB from contents. 25040d25039 < basic.io.database: Using 'ROSETTA/.database-binaries/macclangrelease/rotamer/shapovalov/StpDwn_0-0-0/' as a cache directory.

mac.clang.python39.integration.ddG_scan 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ddG_scan/log_db_output and /home/benchmark/working_dir/main:62148/ddG_scan/log_db_output differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ddG_scan/log_db_output /home/benchmark/working_dir/main:62148/ddG_scan/log_db_output 14c14 < core.import_pose.import_pose: File 'inputs/1A22_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1A22_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.density_refine 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/density_refine/log and /home/benchmark/working_dir/main:62148/density_refine/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/density_refine/log /home/benchmark/working_dir/main:62148/density_refine/log 59c59 < core.import_pose.import_pose: File 'inputs/1onc.model2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1onc.model2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.density_refine_symm 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/density_refine_symm/log and /home/benchmark/working_dir/main:62148/density_refine_symm/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/density_refine_symm/log /home/benchmark/working_dir/main:62148/density_refine_symm/log 59c59 < core.import_pose.import_pose: File 'inputs/1afo_INPUT.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1afo_INPUT.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.density_tools 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/density_tools/log and /home/benchmark/working_dir/main:62148/density_tools/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/density_tools/log /home/benchmark/working_dir/main:62148/density_tools/log 149c149 < core.import_pose.import_pose: File 'inputs/fragment.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/fragment.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.design_glycans 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/design_glycans/info.log and /home/benchmark/working_dir/main:62148/design_glycans/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_glycans/info.log /home/benchmark/working_dir/main:62148/design_glycans/info.log 42c42 < core.import_pose.import_pose: File 'input/N-linked_14-mer_glycan.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/N-linked_14-mer_glycan.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.design_w_custom_palette-CAAs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/design_w_custom_palette-CAAs/info.log and /home/benchmark/working_dir/main:62148/design_w_custom_palette-CAAs/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_w_custom_palette-CAAs/info.log /home/benchmark/working_dir/main:62148/design_w_custom_palette-CAAs/info.log 14c14 < core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.design_w_custom_palette-NCAAs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/design_w_custom_palette-NCAAs/info.log and /home/benchmark/working_dir/main:62148/design_w_custom_palette-NCAAs/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_w_custom_palette-NCAAs/info.log /home/benchmark/working_dir/main:62148/design_w_custom_palette-NCAAs/info.log 14c14 < core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.design_w_custom_palette-RNA 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/design_w_custom_palette-RNA/info.log and /home/benchmark/working_dir/main:62148/design_w_custom_palette-RNA/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_w_custom_palette-RNA/info.log /home/benchmark/working_dir/main:62148/design_w_custom_palette-RNA/info.log 14c14 < core.import_pose.import_pose: File 'input/poly-A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/poly-A.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.dgdp_aio 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/dgdp_aio/run_cryo_dock_and_assemble_aio.log and /home/benchmark/working_dir/main:62148/dgdp_aio/run_cryo_dock_and_assemble_aio.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_aio/run_cryo_dock_and_assemble_aio.log /home/benchmark/working_dir/main:62148/dgdp_aio/run_cryo_dock_and_assemble_aio.log 11c11 < core.import_pose.import_pose: File 'inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 15c15 < core.import_pose.import_pose: File 'inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 18c18 < core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1469c1469 < core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 2924c2924 < core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.dgdp_script 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt differ Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt differ Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt differ Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt differ Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt differ Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt differ Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt differ Files /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt 11c11 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 15c15 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 18c18 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1469c1469 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt 10c10 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 14c14 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1468c1468 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 2923c2923 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt 10c10 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 14c14 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1468c1468 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 2923c2923 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt 10c10 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 14c14 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1468c1468 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 2923c2923 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt 10c10 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 14c14 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1468c1468 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 2923c2923 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt 10c10 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 14c14 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1468c1468 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 2923c2923 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt 10c10 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 14c14 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 1468c1468 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. 2923c2923 < core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt 9c9 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents. 13c13 < core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.dihedral_constraint_generator 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/dihedral_constraint_generator/info.log and /home/benchmark/working_dir/main:62148/dihedral_constraint_generator/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dihedral_constraint_generator/info.log /home/benchmark/working_dir/main:62148/dihedral_constraint_generator/info.log 14c14 < core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.distances 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/distances/log and /home/benchmark/working_dir/main:62148/distances/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/distances/log /home/benchmark/working_dir/main:62148/distances/log 9c9 < core.import_pose.import_pose: File 'inputs/1f4pA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1f4pA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.dock_with_hotspot_place_simultaneously 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/dock_with_hotspot_place_simultaneously/log and /home/benchmark/working_dir/main:62148/dock_with_hotspot_place_simultaneously/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dock_with_hotspot_place_simultaneously/log /home/benchmark/working_dir/main:62148/dock_with_hotspot_place_simultaneously/log 14c14 < core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_distance_constraints 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_distance_constraints/log and /home/benchmark/working_dir/main:62148/docking_distance_constraints/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_distance_constraints/log /home/benchmark/working_dir/main:62148/docking_distance_constraints/log 48c48 < core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_ensemble 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_ensemble/log and /home/benchmark/working_dir/main:62148/docking_ensemble/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_ensemble/log /home/benchmark/working_dir/main:62148/docking_ensemble/log 47c47 < core.import_pose.import_pose: File 'input/1acb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1acb.pdb' automatically determined to be of type PDB from contents. 68c68 < core.import_pose.import_pose: File 'input/receptor1.pdb.ppk' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/receptor1.pdb.ppk' automatically determined to be of type PDB from contents. 73,82c73,82 < core.import_pose.import_pose: File 'input/xxip01_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip02_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip03_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip04_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip05_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip06_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip07_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip08_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip09_0001.pdb.ppk' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/xxip10_0001.pdb.ppk' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/xxip01_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip02_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip03_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip04_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip05_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip06_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip07_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip08_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip09_0001.pdb.ppk' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/xxip10_0001.pdb.ppk' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_ensemble_prepack 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_ensemble_prepack/log and /home/benchmark/working_dir/main:62148/docking_ensemble_prepack/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_ensemble_prepack/log /home/benchmark/working_dir/main:62148/docking_ensemble_prepack/log 36c36 < core.import_pose.import_pose: File '1acb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1acb.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'receptor1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'receptor1.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'xxip01_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip01_0001.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'xxip02_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip02_0001.pdb' automatically determined to be of type PDB from contents. 62c62 < core.import_pose.import_pose: File 'xxip03_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip03_0001.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'xxip04_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip04_0001.pdb' automatically determined to be of type PDB from contents. 66c66 < core.import_pose.import_pose: File 'xxip05_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip05_0001.pdb' automatically determined to be of type PDB from contents. 68c68 < core.import_pose.import_pose: File 'xxip06_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip06_0001.pdb' automatically determined to be of type PDB from contents. 70c70 < core.import_pose.import_pose: File 'xxip07_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip07_0001.pdb' automatically determined to be of type PDB from contents. 72c72 < core.import_pose.import_pose: File 'xxip08_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip08_0001.pdb' automatically determined to be of type PDB from contents. 74c74 < core.import_pose.import_pose: File 'xxip09_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip09_0001.pdb' automatically determined to be of type PDB from contents. 76c76 < core.import_pose.import_pose: File 'xxip10_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xxip10_0001.pdb' automatically determined to be of type PDB from contents. 83c83 < core.import_pose.import_pose: File 'partner1_temp.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'partner1_temp.pdb' automatically determined to be of type PDB from contents. 89c89 < core.import_pose.import_pose: File 'partner2_temp.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'partner2_temp.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_full_protocol 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_full_protocol/log and /home/benchmark/working_dir/main:62148/docking_full_protocol/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_full_protocol/log /home/benchmark/working_dir/main:62148/docking_full_protocol/log 47c47 < core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_local_refine 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_local_refine/log and /home/benchmark/working_dir/main:62148/docking_local_refine/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_local_refine/log /home/benchmark/working_dir/main:62148/docking_local_refine/log 47c47 < core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_local_refine_min 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_local_refine_min/log and /home/benchmark/working_dir/main:62148/docking_local_refine_min/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_local_refine_min/log /home/benchmark/working_dir/main:62148/docking_local_refine_min/log 45c45 < core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_low_res 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_low_res/log and /home/benchmark/working_dir/main:62148/docking_low_res/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_low_res/log /home/benchmark/working_dir/main:62148/docking_low_res/log 44c44 < core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_prepack 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_prepack/log and /home/benchmark/working_dir/main:62148/docking_prepack/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_prepack/log /home/benchmark/working_dir/main:62148/docking_prepack/log 36c36 < core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.docking_site_constraints 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/docking_site_constraints/log and /home/benchmark/working_dir/main:62148/docking_site_constraints/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_site_constraints/log /home/benchmark/working_dir/main:62148/docking_site_constraints/log 47c47 < core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.doug_dock_design_min_mod2_cal_cal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/doug_dock_design_min_mod2_cal_cal/log and /home/benchmark/working_dir/main:62148/doug_dock_design_min_mod2_cal_cal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/doug_dock_design_min_mod2_cal_cal/log /home/benchmark/working_dir/main:62148/doug_dock_design_min_mod2_cal_cal/log 14c14 < core.import_pose.import_pose: File '1NX1_clean_repack_min_all.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NX1_clean_repack_min_all.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.drrafter_error_estimation 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/drrafter_error_estimation/log and /home/benchmark/working_dir/main:62148/drrafter_error_estimation/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/drrafter_error_estimation/log /home/benchmark/working_dir/main:62148/drrafter_error_estimation/log 8,10c8,10 < core.import_pose.import_pose: File 'demo_run.out.1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'demo_run.out.2.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'demo_run.out.3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'demo_run.out.1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'demo_run.out.2.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'demo_run.out.3.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.drrafter_run 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/drrafter_run/log and /home/benchmark/working_dir/main:62148/drrafter_run/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/drrafter_run/log /home/benchmark/working_dir/main:62148/drrafter_run/log 15,17c15,17 < core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB from contents. 57,59c57,59 < core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.energy_based_clustering_alpha_aa_scorefile 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/energy_based_clustering_alpha_aa_scorefile/log and /home/benchmark/working_dir/main:62148/energy_based_clustering_alpha_aa_scorefile/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/energy_based_clustering_alpha_aa_scorefile/log /home/benchmark/working_dir/main:62148/energy_based_clustering_alpha_aa_scorefile/log 19c19 < core.import_pose.import_pose: File 'inputs/pose_01.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/pose_01.pdb' automatically determined to be of type PDB from contents. 23c23 < core.import_pose.import_pose: File 'inputs/pose_02.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/pose_02.pdb' automatically determined to be of type PDB from contents. 27c27 < core.import_pose.import_pose: File 'inputs/pose_03.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/pose_03.pdb' automatically determined to be of type PDB from contents. 31c31 < core.import_pose.import_pose: File 'inputs/pose_04.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/pose_04.pdb' automatically determined to be of type PDB from contents. 35c35 < core.import_pose.import_pose: File 'inputs/pose_05.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/pose_05.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.entropy_correction 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/entropy_correction/log_fa and /home/benchmark/working_dir/main:62148/entropy_correction/log_fa differ Files /home/benchmark/working_dir/main:62147/entropy_correction/log_fa_dun10 and /home/benchmark/working_dir/main:62148/entropy_correction/log_fa_dun10 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/entropy_correction/log_fa /home/benchmark/working_dir/main:62148/entropy_correction/log_fa 60c60 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/entropy_correction/log_fa_dun10 /home/benchmark/working_dir/main:62148/entropy_correction/log_fa_dun10 35c35 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.enumerative_sampling 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/enumerative_sampling/log and /home/benchmark/working_dir/main:62148/enumerative_sampling/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enumerative_sampling/log /home/benchmark/working_dir/main:62148/enumerative_sampling/log 37c37 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.enzscore_filter_dimetal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal/log and /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal/log /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal/log 14c14 < core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.enzscore_filter_dimetal_sym 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal_sym/log and /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal_sym/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal_sym/log /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal_sym/log 14c14 < core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.enzscore_filter_ligand 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/enzscore_filter_ligand/log and /home/benchmark/working_dir/main:62148/enzscore_filter_ligand/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_ligand/log /home/benchmark/working_dir/main:62148/enzscore_filter_ligand/log 14c14 < core.import_pose.import_pose: File 'inputs/1ney_invtree_unittest.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1ney_invtree_unittest.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.enzscore_filter_metal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/enzscore_filter_metal/log and /home/benchmark/working_dir/main:62148/enzscore_filter_metal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_metal/log /home/benchmark/working_dir/main:62148/enzscore_filter_metal/log 14c14 < core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.enzscore_filter_metal_sym 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/enzscore_filter_metal_sym/log and /home/benchmark/working_dir/main:62148/enzscore_filter_metal_sym/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_metal_sym/log /home/benchmark/working_dir/main:62148/enzscore_filter_metal_sym/log 14c14 < core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.erraser_minimize 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/erraser_minimize/log and /home/benchmark/working_dir/main:62148/erraser_minimize/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/erraser_minimize/log /home/benchmark/working_dir/main:62148/erraser_minimize/log 47c47 < core.import_pose.import_pose: File '1Q9A_cut_ready_set.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1Q9A_cut_ready_set.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.evolution 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/evolution/log and /home/benchmark/working_dir/main:62148/evolution/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/evolution/log /home/benchmark/working_dir/main:62148/evolution/log 35c35 < core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.exclusively_shared_jumps 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/exclusively_shared_jumps/log and /home/benchmark/working_dir/main:62148/exclusively_shared_jumps/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/exclusively_shared_jumps/log /home/benchmark/working_dir/main:62148/exclusively_shared_jumps/log 11c11 < core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.farfar_mrna 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/farfar_mrna/log and /home/benchmark/working_dir/main:62148/farfar_mrna/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/farfar_mrna/log /home/benchmark/working_dir/main:62148/farfar_mrna/log 13c13 < core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB from contents. 46c46 < core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.farnesyl 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/farnesyl/log and /home/benchmark/working_dir/main:62148/farnesyl/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/farnesyl/log /home/benchmark/working_dir/main:62148/farnesyl/log 14c14 < core.import_pose.import_pose: File '1kzo_mod.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1kzo_mod.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fast_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fast_relax/log and /home/benchmark/working_dir/main:62148/fast_relax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fast_relax/log /home/benchmark/working_dir/main:62148/fast_relax/log 60c60 < core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.favor_coupling_tensor 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/favor_coupling_tensor/log and /home/benchmark/working_dir/main:62148/favor_coupling_tensor/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/favor_coupling_tensor/log /home/benchmark/working_dir/main:62148/favor_coupling_tensor/log 14c14 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.favor_native_residue 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/favor_native_residue/log and /home/benchmark/working_dir/main:62148/favor_native_residue/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/favor_native_residue/log /home/benchmark/working_dir/main:62148/favor_native_residue/log 39c39 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.features_pdb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/features_pdb/log_db_output and /home/benchmark/working_dir/main:62148/features_pdb/log_db_output differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/features_pdb/log_db_output /home/benchmark/working_dir/main:62148/features_pdb/log_db_output 14c14 < core.import_pose.import_pose: File 'remtest_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'remtest_in.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fiber_diffraction 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_deriv and /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_deriv differ Files /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_score_fa and /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_score_fa differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_deriv /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_deriv 8c8 < core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_score_fa /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_score_fa 43c43 < core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fix_alignment_to_match_pdb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fix_alignment_to_match_pdb/log and /home/benchmark/working_dir/main:62148/fix_alignment_to_match_pdb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fix_alignment_to_match_pdb/log /home/benchmark/working_dir/main:62148/fix_alignment_to_match_pdb/log 8c8 < core.import_pose.import_pose: File 'input/2osoA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2osoA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fixbb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fixbb/log_cen and /home/benchmark/working_dir/main:62148/fixbb/log_cen differ Files /home/benchmark/working_dir/main:62147/fixbb/log_fa and /home/benchmark/working_dir/main:62148/fixbb/log_fa differ Files /home/benchmark/working_dir/main:62147/fixbb/log_fa_dun10 and /home/benchmark/working_dir/main:62148/fixbb/log_fa_dun10 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fixbb/log_cen /home/benchmark/working_dir/main:62148/fixbb/log_cen 26c26 < core.import_pose.import_pose: File '1l2y_centroid.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y_centroid.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fixbb/log_fa /home/benchmark/working_dir/main:62148/fixbb/log_fa 60c60 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fixbb/log_fa_dun10 /home/benchmark/working_dir/main:62148/fixbb/log_fa_dun10 35c35 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.flexpepdock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/flexpepdock/log and /home/benchmark/working_dir/main:62148/flexpepdock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/flexpepdock/log /home/benchmark/working_dir/main:62148/flexpepdock/log 36c36 < core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB from contents. 42c42 < core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'input/1ER8_rb1_tor10_5.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1ER8_rb1_tor10_5.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.flexpepdock_abinitio 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/flexpepdock_abinitio/log and /home/benchmark/working_dir/main:62148/flexpepdock_abinitio/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/flexpepdock_abinitio/log /home/benchmark/working_dir/main:62148/flexpepdock_abinitio/log 31c31 < core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents. 46c46 < core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fold_and_dock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fold_and_dock/log and /home/benchmark/working_dir/main:62148/fold_and_dock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fold_and_dock/log /home/benchmark/working_dir/main:62148/fold_and_dock/log 9073c9073 < core.import_pose.import_pose: File 'input/2akf.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2akf.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fold_cst_new 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fold_cst_new/log and /home/benchmark/working_dir/main:62148/fold_cst_new/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fold_cst_new/log /home/benchmark/working_dir/main:62148/fold_cst_new/log 8c8 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents. 12c12 < core.import_pose.import_pose: File 'inputs/truncate_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/truncate_native.pdb' automatically determined to be of type PDB from contents. 190c190 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fold_from_loops 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fold_from_loops/log and /home/benchmark/working_dir/main:62148/fold_from_loops/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fold_from_loops/log /home/benchmark/working_dir/main:62148/fold_from_loops/log 14c14 < core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB from contents. 138c138 < core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fragment_picker 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fragment_picker/log_picking and /home/benchmark/working_dir/main:62148/fragment_picker/log_picking differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fragment_picker/log_picking /home/benchmark/working_dir/main:62148/fragment_picker/log_picking 26c26 < core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents. 30c30 < core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fragmentpicker_integration_demo 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fragmentpicker_integration_demo/log_picking and /home/benchmark/working_dir/main:62148/fragmentpicker_integration_demo/log_picking differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fragmentpicker_integration_demo/log_picking /home/benchmark/working_dir/main:62148/fragmentpicker_integration_demo/log_picking 15c15 < core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.fuzzy 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/fuzzy/log and /home/benchmark/working_dir/main:62148/fuzzy/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fuzzy/log /home/benchmark/working_dir/main:62148/fuzzy/log 35c35 < core.import_pose.import_pose: File '1bkd_design.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1bkd_design.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ga_ligand_dock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ga_ligand_dock/log and /home/benchmark/working_dir/main:62148/ga_ligand_dock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ga_ligand_dock/log /home/benchmark/working_dir/main:62148/ga_ligand_dock/log 15c15 < core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ga_ligand_dock_amino_acid 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ga_ligand_dock_amino_acid/log and /home/benchmark/working_dir/main:62148/ga_ligand_dock_amino_acid/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ga_ligand_dock_amino_acid/log /home/benchmark/working_dir/main:62148/ga_ligand_dock_amino_acid/log 15c15 < core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ga_ligand_dock_macrocycle 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ga_ligand_dock_macrocycle/log and /home/benchmark/working_dir/main:62148/ga_ligand_dock_macrocycle/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ga_ligand_dock_macrocycle/log /home/benchmark/working_dir/main:62148/ga_ligand_dock_macrocycle/log 15c15 < core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.gen_lig_grids 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/gen_lig_grids/log and /home/benchmark/working_dir/main:62148/gen_lig_grids/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/gen_lig_grids/log /home/benchmark/working_dir/main:62148/gen_lig_grids/log 8c8 < core.import_pose.import_pose: File 'inputs/1a53_nohet_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1a53_nohet_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.genkic_sugars 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/genkic_sugars/log and /home/benchmark/working_dir/main:62148/genkic_sugars/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/genkic_sugars/log /home/benchmark/working_dir/main:62148/genkic_sugars/log 14c14 < core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents. 171c171 < core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents. 228c228 < core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents. 286c286 < core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents. 344c344 < core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.geometric_solvation 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/geometric_solvation/log and /home/benchmark/working_dir/main:62148/geometric_solvation/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/geometric_solvation/log /home/benchmark/working_dir/main:62148/geometric_solvation/log 63c63 < core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB from contents. 65c65 < core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycan_anomers 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycan_anomers/log and /home/benchmark/working_dir/main:62148/glycan_anomers/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_anomers/log /home/benchmark/working_dir/main:62148/glycan_anomers/log 15c15 < core.import_pose.import_pose: File 'inputs/anomers.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/anomers.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycan_clash_check 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycan_clash_check/log and /home/benchmark/working_dir/main:62148/glycan_clash_check/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_clash_check/log /home/benchmark/working_dir/main:62148/glycan_clash_check/log 15c15 < core.import_pose.import_pose: File 'test1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'test1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycan_refinment 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycan_refinment/log and /home/benchmark/working_dir/main:62148/glycan_refinment/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_refinment/log /home/benchmark/working_dir/main:62148/glycan_refinment/log 38c38 < core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB from contents. 381c381 < core.import_pose.import_pose: File 'inputs/stretched.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/stretched.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycan_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycan_relax/log and /home/benchmark/working_dir/main:62148/glycan_relax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_relax/log /home/benchmark/working_dir/main:62148/glycan_relax/log 14c14 < core.import_pose.import_pose: File 'input/pareto_original.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/pareto_original.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycan_sequon_scanner 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycan_sequon_scanner/log and /home/benchmark/working_dir/main:62148/glycan_sequon_scanner/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_sequon_scanner/log /home/benchmark/working_dir/main:62148/glycan_sequon_scanner/log 14c14 < core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycan_tree_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycan_tree_relax/hybrid_info.log and /home/benchmark/working_dir/main:62148/glycan_tree_relax/hybrid_info.log differ Files /home/benchmark/working_dir/main:62147/glycan_tree_relax/refine_info.log and /home/benchmark/working_dir/main:62148/glycan_tree_relax/refine_info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_tree_relax/hybrid_info.log /home/benchmark/working_dir/main:62148/glycan_tree_relax/hybrid_info.log 15c15 < core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_tree_relax/refine_info.log /home/benchmark/working_dir/main:62148/glycan_tree_relax/refine_info.log 15c15 < core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycopeptidedocking 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycopeptidedocking/info.log and /home/benchmark/working_dir/main:62148/glycopeptidedocking/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycopeptidedocking/info.log /home/benchmark/working_dir/main:62148/glycopeptidedocking/info.log 39c39 < core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.ppk.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.ppk.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.glycopeptidedocking_diglyco_long 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/glycopeptidedocking_diglyco_long/info.log and /home/benchmark/working_dir/main:62148/glycopeptidedocking_diglyco_long/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycopeptidedocking_diglyco_long/info.log /home/benchmark/working_dir/main:62148/glycopeptidedocking_diglyco_long/info.log 39c39 < core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.grid_scores_features 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/grid_scores_features/log and /home/benchmark/working_dir/main:62148/grid_scores_features/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/grid_scores_features/log /home/benchmark/working_dir/main:62148/grid_scores_features/log 14c14 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hbnet_use_input_rot 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hbnet_use_input_rot/info1.log and /home/benchmark/working_dir/main:62148/hbnet_use_input_rot/info1.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbnet_use_input_rot/info1.log /home/benchmark/working_dir/main:62148/hbnet_use_input_rot/info1.log 14c14 < core.import_pose.import_pose: File 'predesigned_bb_SS_0024_7_input_0001_0001_0005_0001_000000013.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'predesigned_bb_SS_0024_7_input_0001_0001_0005_0001_000000013.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hbonds 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hbonds/log_fa and /home/benchmark/working_dir/main:62148/hbonds/log_fa differ Files /home/benchmark/working_dir/main:62147/hbonds/pack_log_fa and /home/benchmark/working_dir/main:62148/hbonds/pack_log_fa differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds/log_fa /home/benchmark/working_dir/main:62148/hbonds/log_fa 8c8 < core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds/pack_log_fa /home/benchmark/working_dir/main:62148/hbonds/pack_log_fa 35c35 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hbonds_sp2 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hbonds_sp2/log_fa and /home/benchmark/working_dir/main:62148/hbonds_sp2/log_fa differ Files /home/benchmark/working_dir/main:62147/hbonds_sp2/pack_log_fa and /home/benchmark/working_dir/main:62148/hbonds_sp2/pack_log_fa differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds_sp2/log_fa /home/benchmark/working_dir/main:62148/hbonds_sp2/log_fa 11c11 < core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds_sp2/pack_log_fa /home/benchmark/working_dir/main:62148/hbonds_sp2/pack_log_fa 36c36 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hbs_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hbs_design/log and /home/benchmark/working_dir/main:62148/hbs_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbs_design/log /home/benchmark/working_dir/main:62148/hbs_design/log 14c14 < core.import_pose.import_pose: File './input/mdm2_HBS_2_0010.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/mdm2_HBS_2_0010.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.helical_bundle_predict 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/helical_bundle_predict/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict/log1 50c50 < core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.helical_bundle_predict_psipred 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred/log1 53c53 < core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.helical_bundle_predict_psipred_with_helix_globals 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred_with_helix_globals/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred_with_helix_globals/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred_with_helix_globals/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred_with_helix_globals/log1 54c54 < core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.helical_bundle_predict_sequence 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/helical_bundle_predict_sequence/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_sequence/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_sequence/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_sequence/log1 47c47 < core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.helical_bundle_predict_skipping_residues 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/helical_bundle_predict_skipping_residues/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_skipping_residues/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_skipping_residues/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_skipping_residues/log1 50c50 < core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.homodimer_fnd_ref2015_memb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/homodimer_fnd_ref2015_memb/log and /home/benchmark/working_dir/main:62148/homodimer_fnd_ref2015_memb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/homodimer_fnd_ref2015_memb/log /home/benchmark/working_dir/main:62148/homodimer_fnd_ref2015_memb/log 8c8 < core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB from contents. 338c338 < core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hotspot_graft 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hotspot_graft/log and /home/benchmark/working_dir/main:62148/hotspot_graft/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hotspot_graft/log /home/benchmark/working_dir/main:62148/hotspot_graft/log 14c14 < core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hotspot_hashing 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hotspot_hashing/log and /home/benchmark/working_dir/main:62148/hotspot_hashing/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hotspot_hashing/log /home/benchmark/working_dir/main:62148/hotspot_hashing/log 30c30 < core.import_pose.import_pose: File 'input/2dsrI.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2dsrI.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hotspot_stub_constraints 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hotspot_stub_constraints/log and /home/benchmark/working_dir/main:62148/hotspot_stub_constraints/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hotspot_stub_constraints/log /home/benchmark/working_dir/main:62148/hotspot_stub_constraints/log 8c8 < core.import_pose.import_pose: File '1a22_prot.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1a22_prot.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hshash_utils 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hshash_utils/log and /home/benchmark/working_dir/main:62148/hshash_utils/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hshash_utils/log /home/benchmark/working_dir/main:62148/hshash_utils/log 8c8 < core.import_pose.import_pose: File 'input/4akea.mrtm12.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4akea.mrtm12.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hts_io 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hts_io/log and /home/benchmark/working_dir/main:62148/hts_io/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hts_io/log /home/benchmark/working_dir/main:62148/hts_io/log 17c17 < core.import_pose.import_pose: File 'model1j36B_0001.pdb 000_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'model1j36B_0001.pdb 000_0001.pdb' automatically determined to be of type PDB from contents. 197c197 < core.import_pose.import_pose: File 'model1j36B_0001.pdb 001_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'model1j36B_0001.pdb 001_0001.pdb' automatically determined to be of type PDB from contents. 324c324 < core.import_pose.import_pose: File 'model1r42A_0001.pdb 000_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'model1r42A_0001.pdb 000_0001.pdb' automatically determined to be of type PDB from contents. 455c455 < core.import_pose.import_pose: File 'model1r42A_0001.pdb 001_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'model1r42A_0001.pdb 001_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hybridization 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hybridization/log and /home/benchmark/working_dir/main:62148/hybridization/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hybridization/log /home/benchmark/working_dir/main:62148/hybridization/log 166c166 < core.import_pose.import_pose: File 'inputs/model1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/model1.pdb' automatically determined to be of type PDB from contents. 1008c1008 < core.import_pose.import_pose: File 'inputs/model2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/model2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hydrate 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hydrate/log_repack and /home/benchmark/working_dir/main:62148/hydrate/log_repack differ Files /home/benchmark/working_dir/main:62147/hydrate/log_rotamer and /home/benchmark/working_dir/main:62148/hydrate/log_rotamer differ Files /home/benchmark/working_dir/main:62147/hydrate/log_score and /home/benchmark/working_dir/main:62148/hydrate/log_score differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate/log_repack /home/benchmark/working_dir/main:62148/hydrate/log_repack 30c30 < core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate/log_rotamer /home/benchmark/working_dir/main:62148/hydrate/log_rotamer 30c30 < core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate/log_score /home/benchmark/working_dir/main:62148/hydrate/log_score 30c30 < core.import_pose.import_pose: File '1BRS_wet.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1BRS_wet.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.hydrate_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/hydrate_relax/log_relax and /home/benchmark/working_dir/main:62148/hydrate_relax/log_relax differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate_relax/log_relax /home/benchmark/working_dir/main:62148/hydrate_relax/log_relax 54c54 < core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.identify_cdr_clusters 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/identify_cdr_clusters/log and /home/benchmark/working_dir/main:62148/identify_cdr_clusters/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/identify_cdr_clusters/log /home/benchmark/working_dir/main:62148/identify_cdr_clusters/log 14c14 < core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ig_dump 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ig_dump/log and /home/benchmark/working_dir/main:62148/ig_dump/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ig_dump/log /home/benchmark/working_dir/main:62148/ig_dump/log 30c30 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.interaction_graph_summary_metric 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/interaction_graph_summary_metric/log and /home/benchmark/working_dir/main:62148/interaction_graph_summary_metric/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/interaction_graph_summary_metric/log /home/benchmark/working_dir/main:62148/interaction_graph_summary_metric/log 14c14 < core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.interface_energy 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/interface_energy/log and /home/benchmark/working_dir/main:62148/interface_energy/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/interface_energy/log /home/benchmark/working_dir/main:62148/interface_energy/log 8c8 < core.import_pose.import_pose: File 'input/4lgs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4lgs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.inv_kin_lig_loop_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_hbond and /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_hbond differ Files /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_template and /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_template differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_hbond /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_hbond 21c21 < core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_template /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_template 21c21 < core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB from contents. 74c74 < core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.iphold 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/iphold/log and /home/benchmark/working_dir/main:62148/iphold/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/iphold/log /home/benchmark/working_dir/main:62148/iphold/log 18c18 < core.import_pose.import_pose: File 'input/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.jd2test_PDBIO 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log1 and /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log1 differ Files /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log2 and /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log2 differ Files /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log3 and /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log3 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log1 /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log1 39c39 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents. 110c110 < core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents. 133c133 < core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log2 /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log2 39c39 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents. 86c86 < core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents. 109c109 < core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents. 132c132 < core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents. 149c149 < core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log3 /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log3 39c39 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents. 110c110 < core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents. 133c133 < core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.jd2test_PDBin_mmCIFout 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log1 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log1 differ Files /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log2 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log2 differ Files /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log3 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log3 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log1 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log1 39c39 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 110c110 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 133c133 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log2 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log2 39c39 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 86c86 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 109c109 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 132c132 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. 149c149 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log3 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log3 39c39 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 110c110 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 133c133 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.jd2test_PDBin_mmCIFout_extra_data_separate 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log1 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log1 differ Files /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log2 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log2 differ Files /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log3 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log3 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log1 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log1 39c39 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 110c110 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 133c133 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log2 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log2 39c39 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 86c86 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 109c109 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 132c132 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. 149c149 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log3 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log3 39c39 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 110c110 < core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents. 133c133 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.jd2test_mmCIFIO 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log1 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log1 differ Files /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log2 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log1 /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log1 39c39 < core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents. 60c60 < core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents. 102c102 < core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log2 /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log2 17c17 < core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents. 58c58 < core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents. 84c84 < core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents.

mac.clang.python39.integration.jd2test_mmCIFin_PDBout 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log1 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log1 differ Files /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log2 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log1 /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log1 39c39 < core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents. 60c60 < core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents. 102c102 < core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log2 /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log2 17c17 < core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents. 58c58 < core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents. 84c84 < core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents.

mac.clang.python39.integration.jrelax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/jrelax/log and /home/benchmark/working_dir/main:62148/jrelax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jrelax/log /home/benchmark/working_dir/main:62148/jrelax/log 50c50 < core.import_pose.import_pose: File 'input/short.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/short.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.jscore 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/jscore/log and /home/benchmark/working_dir/main:62148/jscore/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jscore/log /home/benchmark/working_dir/main:62148/jscore/log 31c31 < core.import_pose.import_pose: File 'input/1dikA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1dikA.pdb' automatically determined to be of type PDB from contents. 35c35 < core.import_pose.import_pose: File 'input/1ezaA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1ezaA.pdb' automatically determined to be of type PDB from contents. 37c37 < core.import_pose.import_pose: File 'input/1ggoA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1ggoA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.kinemage_grid_output 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/kinemage_grid_output/log and /home/benchmark/working_dir/main:62148/kinemage_grid_output/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/kinemage_grid_output/log /home/benchmark/working_dir/main:62148/kinemage_grid_output/log 14c14 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents. 150c150 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.kinematic_looprelax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/kinematic_looprelax/log and /home/benchmark/working_dir/main:62148/kinematic_looprelax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/kinematic_looprelax/log /home/benchmark/working_dir/main:62148/kinematic_looprelax/log 43c43 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 66c66 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ld_converter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ld_converter/log and /home/benchmark/working_dir/main:62148/ld_converter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ld_converter/log /home/benchmark/working_dir/main:62148/ld_converter/log 14c14 < core.import_pose.import_pose: File 'input/AAdAdA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/AAdAdA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_database_io 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_database_io/log and /home/benchmark/working_dir/main:62148/ligand_database_io/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_database_io/log /home/benchmark/working_dir/main:62148/ligand_database_io/log 24c24 < core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents. 172c172 < core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_dock_7cpa 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_dock_7cpa/log and /home/benchmark/working_dir/main:62148/ligand_dock_7cpa/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_7cpa/log /home/benchmark/working_dir/main:62148/ligand_dock_7cpa/log 10c10 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents. 15c15 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_dock_cholesterol 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_dock_cholesterol/log and /home/benchmark/working_dir/main:62148/ligand_dock_cholesterol/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_cholesterol/log /home/benchmark/working_dir/main:62148/ligand_dock_cholesterol/log 11c11 < core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents. 67c67 < core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents. 116c116 < core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_dock_ensemble 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_dock_ensemble/log and /home/benchmark/working_dir/main:62148/ligand_dock_ensemble/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_ensemble/log /home/benchmark/working_dir/main:62148/ligand_dock_ensemble/log 14c14 < core.import_pose.import_pose: File 'inputs/girk_ligands.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/girk_ligands.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_dock_grid 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_dock_grid/log and /home/benchmark/working_dir/main:62148/ligand_dock_grid/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_grid/log /home/benchmark/working_dir/main:62148/ligand_dock_grid/log 14c14 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents. 126c126 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_dock_script 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_dock_script/log and /home/benchmark/working_dir/main:62148/ligand_dock_script/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_script/log /home/benchmark/working_dir/main:62148/ligand_dock_script/log 14c14 < core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents. 162c162 < core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_motif_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_motif_design/design.log and /home/benchmark/working_dir/main:62148/ligand_motif_design/design.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_motif_design/design.log /home/benchmark/working_dir/main:62148/ligand_motif_design/design.log 14c14 < core.import_pose.import_pose: File '2p09.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2p09.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_motif_discovery 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_motif_discovery/log and /home/benchmark/working_dir/main:62148/ligand_motif_discovery/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_motif_discovery/log /home/benchmark/working_dir/main:62148/ligand_motif_discovery/log 16c16 < core.import_pose.import_pose: File '4s0v_receptor_only.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4s0v_receptor_only.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_motif_identification 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_motif_identification/log and /home/benchmark/working_dir/main:62148/ligand_motif_identification/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_motif_identification/log /home/benchmark/working_dir/main:62148/ligand_motif_identification/log 27c27 < core.import_pose.import_pose: File '4s0v.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4s0v.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ligand_water_docking 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ligand_water_docking/ligand_centric_log and /home/benchmark/working_dir/main:62148/ligand_water_docking/ligand_centric_log differ Files /home/benchmark/working_dir/main:62147/ligand_water_docking/protein_centric_log and /home/benchmark/working_dir/main:62148/ligand_water_docking/protein_centric_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_water_docking/ligand_centric_log /home/benchmark/working_dir/main:62148/ligand_water_docking/ligand_centric_log 11c11 < core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB from contents. 85c85 < core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents. 147c147 < core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_water_docking/protein_centric_log /home/benchmark/working_dir/main:62148/ligand_water_docking/protein_centric_log 11c11 < core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB from contents. 85c85 < core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents. 147c147 < core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.loop_creation 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/loop_creation/log and /home/benchmark/working_dir/main:62148/loop_creation/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_creation/log /home/benchmark/working_dir/main:62148/loop_creation/log 14c14 < core.import_pose.import_pose: File 'tree_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'tree_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.loop_grower_N_term_symm 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/loop_grower_N_term_symm/log and /home/benchmark/working_dir/main:62148/loop_grower_N_term_symm/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_grower_N_term_symm/log /home/benchmark/working_dir/main:62148/loop_grower_N_term_symm/log 14c14 < core.import_pose.import_pose: File 'inputs/1rpb_symm_INPUT.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1rpb_symm_INPUT.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.loop_hash 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/loop_hash/log_createdb and /home/benchmark/working_dir/main:62148/loop_hash/log_createdb differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_hash/log_createdb /home/benchmark/working_dir/main:62148/loop_hash/log_createdb 20c20 < core.import_pose.import_pose: File 'S_00001_0000001_0_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'S_00001_0000001_0_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.loop_modeling 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/loop_modeling/log and /home/benchmark/working_dir/main:62148/loop_modeling/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_modeling/log /home/benchmark/working_dir/main:62148/loop_modeling/log 59c59 < core.import_pose.import_pose: File 'inputs/4fxn.start_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.make_exemplar 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/make_exemplar/log and /home/benchmark/working_dir/main:62148/make_exemplar/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/make_exemplar/log /home/benchmark/working_dir/main:62148/make_exemplar/log 15c15 < core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.make_symmdef_file 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/make_symmdef_file/log and /home/benchmark/working_dir/main:62148/make_symmdef_file/log differ Files /home/benchmark/working_dir/main:62147/make_symmdef_file/nc_log and /home/benchmark/working_dir/main:62148/make_symmdef_file/nc_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/make_symmdef_file/log /home/benchmark/working_dir/main:62148/make_symmdef_file/log 13c13 < core.import_pose.import_pose: File 'inputs/1xu1FH_D.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1xu1FH_D.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/make_symmdef_file/nc_log /home/benchmark/working_dir/main:62148/make_symmdef_file/nc_log 22c22 < core.import_pose.import_pose: File 'inputs/3UKM.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/3UKM.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.match_1c2t 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/match_1c2t/1c2t.log and /home/benchmark/working_dir/main:62148/match_1c2t/1c2t.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_1c2t/1c2t.log /home/benchmark/working_dir/main:62148/match_1c2t/1c2t.log 8c8 < core.import_pose.import_pose: File 'inputs/1c2t/1c2t_9_nohet.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1c2t/1c2t_9_nohet.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.match_1n9l 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/match_1n9l/1n9l.log and /home/benchmark/working_dir/main:62148/match_1n9l/1n9l.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_1n9l/1n9l.log /home/benchmark/working_dir/main:62148/match_1n9l/1n9l.log 8c8 < core.import_pose.import_pose: File 'inputs/1n9l_CHbN/1n9l_11.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1n9l_CHbN/1n9l_11.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.match_6cpa 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/match_6cpa/6cpa.log and /home/benchmark/working_dir/main:62148/match_6cpa/6cpa.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_6cpa/6cpa.log /home/benchmark/working_dir/main:62148/match_6cpa/6cpa.log 8c8 < core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.match_xml 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/match_xml/log and /home/benchmark/working_dir/main:62148/match_xml/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_xml/log /home/benchmark/working_dir/main:62148/match_xml/log 14c14 < core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.membrane_abinitio 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/membrane_abinitio/log and /home/benchmark/working_dir/main:62148/membrane_abinitio/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_abinitio/log /home/benchmark/working_dir/main:62148/membrane_abinitio/log 8c8 < core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB from contents. 12c12 < core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.membrane_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/membrane_relax/log and /home/benchmark/working_dir/main:62148/membrane_relax/log differ Files /home/benchmark/working_dir/main:62147/membrane_relax/Menv_smooth.log and /home/benchmark/working_dir/main:62148/membrane_relax/Menv_smooth.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax/log /home/benchmark/working_dir/main:62148/membrane_relax/log 70c70 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 75c75 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 80c80 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax/Menv_smooth.log /home/benchmark/working_dir/main:62148/membrane_relax/Menv_smooth.log 78c78 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 83c83 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 88c88 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.membrane_relax_hbond 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/membrane_relax_hbond/log and /home/benchmark/working_dir/main:62148/membrane_relax_hbond/log differ Files /home/benchmark/working_dir/main:62147/membrane_relax_hbond/Menv_smooth.log and /home/benchmark/working_dir/main:62148/membrane_relax_hbond/Menv_smooth.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax_hbond/log /home/benchmark/working_dir/main:62148/membrane_relax_hbond/log 70c70 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 75c75 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 80c80 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax_hbond/Menv_smooth.log /home/benchmark/working_dir/main:62148/membrane_relax_hbond/Menv_smooth.log 78c78 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 83c83 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents. 88c88 < core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.metal_setup 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/metal_setup/log and /home/benchmark/working_dir/main:62148/metal_setup/log differ Files /home/benchmark/working_dir/main:62147/metal_setup/log_resfile and /home/benchmark/working_dir/main:62148/metal_setup/log_resfile differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metal_setup/log /home/benchmark/working_dir/main:62148/metal_setup/log 36c36 < core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metal_setup/log_resfile /home/benchmark/working_dir/main:62148/metal_setup/log_resfile 36c36 < core.import_pose.import_pose: File '1l8c.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l8c.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.metalloprotein_abrelax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/metalloprotein_abrelax/log and /home/benchmark/working_dir/main:62148/metalloprotein_abrelax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metalloprotein_abrelax/log /home/benchmark/working_dir/main:62148/metalloprotein_abrelax/log 8c8 < core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB from contents. 13c13 < core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.metropolis_hastings 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/metropolis_hastings/log_rosetta_scripts and /home/benchmark/working_dir/main:62148/metropolis_hastings/log_rosetta_scripts differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metropolis_hastings/log_rosetta_scripts /home/benchmark/working_dir/main:62148/metropolis_hastings/log_rosetta_scripts 14c14 < core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mf_fixbb_des 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mf_fixbb_des/log and /home/benchmark/working_dir/main:62148/mf_fixbb_des/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mf_fixbb_des/log /home/benchmark/working_dir/main:62148/mf_fixbb_des/log 15c15 < core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents. 99c99 < core.import_pose.import_pose: File './inputs/mut_ENLYFQS_0003.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/mut_ENLYFQS_0003.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mf_fixbb_sc 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mf_fixbb_sc/log and /home/benchmark/working_dir/main:62148/mf_fixbb_sc/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mf_fixbb_sc/log /home/benchmark/working_dir/main:62148/mf_fixbb_sc/log 15c15 < core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents. 77c77 < core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mf_flexbb_sc 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mf_flexbb_sc/log and /home/benchmark/working_dir/main:62148/mf_flexbb_sc/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mf_flexbb_sc/log /home/benchmark/working_dir/main:62148/mf_flexbb_sc/log 15c15 < core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents. 77,81c77,81 < core.import_pose.import_pose: File './inputs/mut_ANLYFQG_0004.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/mut_EELYGQS_0001.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/mut_EQLIGQS_0005.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/mut_EWLYLQG_0003.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File './inputs/mut_TILYGQS_0005.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/mut_ANLYFQG_0004.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/mut_EELYGQS_0001.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/mut_EQLIGQS_0005.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/mut_EWLYLQG_0003.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File './inputs/mut_TILYGQS_0005.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mg_modeler 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mg_modeler/log and /home/benchmark/working_dir/main:62148/mg_modeler/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mg_modeler/log /home/benchmark/working_dir/main:62148/mg_modeler/log 8c8 < core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mg_modeler_lores 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mg_modeler_lores/log and /home/benchmark/working_dir/main:62148/mg_modeler_lores/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mg_modeler_lores/log /home/benchmark/working_dir/main:62148/mg_modeler_lores/log 8c8 < core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mhc_epitope 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mhc_epitope/log and /home/benchmark/working_dir/main:62148/mhc_epitope/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mhc_epitope/log /home/benchmark/working_dir/main:62148/mhc_epitope/log 14c14 < core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mhc_epitope_nmer_preload 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mhc_epitope_nmer_preload/log and /home/benchmark/working_dir/main:62148/mhc_epitope_nmer_preload/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mhc_epitope_nmer_preload/log /home/benchmark/working_dir/main:62148/mhc_epitope_nmer_preload/log 14c14 < core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.min_pack_min 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/min_pack_min/min_pack_min.log and /home/benchmark/working_dir/main:62148/min_pack_min/min_pack_min.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/min_pack_min/min_pack_min.log /home/benchmark/working_dir/main:62148/min_pack_min/min_pack_min.log 60c60 < core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.minimize_with_elec_dens 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/minimize_with_elec_dens/log and /home/benchmark/working_dir/main:62148/minimize_with_elec_dens/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/minimize_with_elec_dens/log /home/benchmark/working_dir/main:62148/minimize_with_elec_dens/log 14c14 < core.import_pose.import_pose: File 'inputs/1xu1FH_D_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1xu1FH_D_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mixed_monte_carlo 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mixed_monte_carlo/log_basic and /home/benchmark/working_dir/main:62148/mixed_monte_carlo/log_basic differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mixed_monte_carlo/log_basic /home/benchmark/working_dir/main:62148/mixed_monte_carlo/log_basic 16c16 < core.import_pose.import_pose: File 'input/complex.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/complex.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.motif_dna_packer_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/motif_dna_packer_design/design.log and /home/benchmark/working_dir/main:62148/motif_dna_packer_design/design.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/motif_dna_packer_design/design.log /home/benchmark/working_dir/main:62148/motif_dna_packer_design/design.log 30c30 < core.import_pose.import_pose: File 'anii.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'anii.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.motif_extraction 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/motif_extraction/log and /home/benchmark/working_dir/main:62148/motif_extraction/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/motif_extraction/log /home/benchmark/working_dir/main:62148/motif_extraction/log 10c10 < core.import_pose.import_pose: File './pdb_set/1a2pFH_B_rot.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdb_set/1a2pFH_B_rot.pdb' automatically determined to be of type PDB from contents. 32c32 < core.import_pose.import_pose: File './pdb_set/1a2yFH_A_rot.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './pdb_set/1a2yFH_A_rot.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.motif_score_filter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/motif_score_filter/log and /home/benchmark/working_dir/main:62148/motif_score_filter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/motif_score_filter/log /home/benchmark/working_dir/main:62148/motif_score_filter/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_dock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_dock/log and /home/benchmark/working_dir/main:62148/mp_dock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock/log /home/benchmark/working_dir/main:62148/mp_dock/log 41c41 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_dock_ensemble 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_dock_ensemble/log and /home/benchmark/working_dir/main:62148/mp_dock_ensemble/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock_ensemble/log /home/benchmark/working_dir/main:62148/mp_dock_ensemble/log 8c8 < core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'inputs/2k9j_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2k9j_AB.pdb' automatically determined to be of type PDB from contents. 80c80 < core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents. 89,90c89,90 < core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents. 268c268 < core.import_pose.import_pose: File 'inputs/br_receptor_0001.pdb.ppk' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/br_receptor_0001.pdb.ppk' automatically determined to be of type PDB from contents. 273c273 < core.import_pose.import_pose: File 'inputs/br_ligand_0001.pdb.ppk' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/br_ligand_0001.pdb.ppk' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_dock_prepack 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_dock_prepack/log and /home/benchmark/working_dir/main:62148/mp_dock_prepack/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock_prepack/log /home/benchmark/working_dir/main:62148/mp_dock_prepack/log 41c41 < core.import_pose.import_pose: File 'input/2knc_tr.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2knc_tr.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_dock_setup 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_dock_setup/log and /home/benchmark/working_dir/main:62148/mp_dock_setup/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock_setup/log /home/benchmark/working_dir/main:62148/mp_dock_setup/log 10c10 < core.import_pose.import_pose: File 'inputs/1AFO_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_A.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'inputs/1AFO_B.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_B.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_domain_assembly 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_domain_assembly/log and /home/benchmark/working_dir/main:62148/mp_domain_assembly/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_domain_assembly/log /home/benchmark/working_dir/main:62148/mp_domain_assembly/log 12c12 < core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_sol.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_sol.pdb' automatically determined to be of type PDB from contents. 16c16 < core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_tm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_tm.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_domain_assembly_FtsQ 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_domain_assembly_FtsQ/log and /home/benchmark/working_dir/main:62148/mp_domain_assembly_FtsQ/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_domain_assembly_FtsQ/log /home/benchmark/working_dir/main:62148/mp_domain_assembly_FtsQ/log 12,13c12,13 < core.import_pose.import_pose: File 'inputs/FtsQ_tmd_oriented_cleaned_0001.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'inputs/6h9o_onesubunit_0999_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/FtsQ_tmd_oriented_cleaned_0001.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'inputs/6h9o_onesubunit_0999_A.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_f19_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_f19_relax/log and /home/benchmark/working_dir/main:62148/mp_f19_relax/log differ Files /home/benchmark/working_dir/main:62147/mp_f19_relax/.test_got_timeout_kill.log and /home/benchmark/working_dir/main:62148/mp_f19_relax/.test_got_timeout_kill.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_f19_relax/log /home/benchmark/working_dir/main:62148/mp_f19_relax/log 14c14 < core.import_pose.import_pose: File 'decoy.54.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'decoy.54.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_f19_relax/.test_got_timeout_kill.log /home/benchmark/working_dir/main:62148/mp_f19_relax/.test_got_timeout_kill.log 1c1 < *** Test mp_f19_relax exceeded the timeout=480 and will be killed! [2025-02-08 04:38:34.145466] --- > *** Test mp_f19_relax exceeded the timeout=480 and will be killed! [2025-03-18 19:44:05.321178] Compare(...): Marking as "Script failed" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!

mac.clang.python39.integration.mp_find_interface 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_find_interface/log and /home/benchmark/working_dir/main:62148/mp_find_interface/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_find_interface/log /home/benchmark/working_dir/main:62148/mp_find_interface/log 11c11 < core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents. 16c16 < core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents. 275c275 < core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents. 379c379 < core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents. 28164c28164 < core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_interface_statistics 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_interface_statistics/log and /home/benchmark/working_dir/main:62148/mp_interface_statistics/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_interface_statistics/log /home/benchmark/working_dir/main:62148/mp_interface_statistics/log 14c14 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_ligand_interface 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_ligand_interface/log and /home/benchmark/working_dir/main:62148/mp_ligand_interface/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_ligand_interface/log /home/benchmark/working_dir/main:62148/mp_ligand_interface/log 14c14 < core.import_pose.import_pose: File '4dkl_A_relax.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4dkl_A_relax.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_loadtime 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_loadtime/log and /home/benchmark/working_dir/main:62148/mp_loadtime/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_loadtime/log /home/benchmark/working_dir/main:62148/mp_loadtime/log 14c14 < core.import_pose.import_pose: File 'inputs/1C3W_TR_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1C3W_TR_A.pdb' automatically determined to be of type PDB from contents. 276c276 < core.import_pose.import_pose: File 'inputs/1AFO_tr.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_tr.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_mutate_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_mutate_relax/log and /home/benchmark/working_dir/main:62148/mp_mutate_relax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_mutate_relax/log /home/benchmark/working_dir/main:62148/mp_mutate_relax/log 14c14 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents. 18c18 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents. 115c115 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents. 197c197 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_mutate_repack 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_mutate_repack/log and /home/benchmark/working_dir/main:62148/mp_mutate_repack/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_mutate_repack/log /home/benchmark/working_dir/main:62148/mp_mutate_repack/log 12c12 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents. 16c16 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents. 136c136 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_quick_relax_ref2015_memb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_quick_relax_ref2015_memb/run_log and /home/benchmark/working_dir/main:62148/mp_quick_relax_ref2015_memb/run_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_quick_relax_ref2015_memb/run_log /home/benchmark/working_dir/main:62148/mp_quick_relax_ref2015_memb/run_log 15c15 < core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_range_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_range_relax/log and /home/benchmark/working_dir/main:62148/mp_range_relax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_range_relax/log /home/benchmark/working_dir/main:62148/mp_range_relax/log 38c38 < core.import_pose.import_pose: File 'inputs/1AFO__opm.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO__opm.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_relax/log and /home/benchmark/working_dir/main:62148/mp_relax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_relax/log /home/benchmark/working_dir/main:62148/mp_relax/log 14c14 < core.import_pose.import_pose: File 'inputs/1afo_tr_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1afo_tr_native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_relax_w_ligand 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_relax_w_ligand/log and /home/benchmark/working_dir/main:62148/mp_relax_w_ligand/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_relax_w_ligand/log /home/benchmark/working_dir/main:62148/mp_relax_w_ligand/log 15c15 < core.import_pose.import_pose: File '3PXO_A_tr.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3PXO_A_tr.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_score_jd2 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_score_jd2/log and /home/benchmark/working_dir/main:62148/mp_score_jd2/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_score_jd2/log /home/benchmark/working_dir/main:62148/mp_score_jd2/log 34c34 < core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_span_ang_ref2015_memb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_span_ang_ref2015_memb/run_log and /home/benchmark/working_dir/main:62148/mp_span_ang_ref2015_memb/run_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_span_ang_ref2015_memb/run_log /home/benchmark/working_dir/main:62148/mp_span_ang_ref2015_memb/run_log 15c15 < core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_span_from_pdb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_span_from_pdb/log and /home/benchmark/working_dir/main:62148/mp_span_from_pdb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_span_from_pdb/log /home/benchmark/working_dir/main:62148/mp_span_from_pdb/log 9c9 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_symdock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_symdock/log and /home/benchmark/working_dir/main:62148/mp_symdock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_symdock/log /home/benchmark/working_dir/main:62148/mp_symdock/log 14c14 < core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_symmetry_load 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_symmetry_load/log and /home/benchmark/working_dir/main:62148/mp_symmetry_load/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_symmetry_load/log /home/benchmark/working_dir/main:62148/mp_symmetry_load/log 14c14 < core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_transform 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_transform/log and /home/benchmark/working_dir/main:62148/mp_transform/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_transform/log /home/benchmark/working_dir/main:62148/mp_transform/log 38c38 < core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_transform_optimize 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_transform_optimize/log and /home/benchmark/working_dir/main:62148/mp_transform_optimize/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_transform_optimize/log /home/benchmark/working_dir/main:62148/mp_transform_optimize/log 38c38 < core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mp_vis_emb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mp_vis_emb/log and /home/benchmark/working_dir/main:62148/mp_vis_emb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_vis_emb/log /home/benchmark/working_dir/main:62148/mp_vis_emb/log 38c38 < core.import_pose.import_pose: File 'inputs/3EFF_TR.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/3EFF_TR.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mpil_find_pore_ahelical 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mpil_find_pore_ahelical/log and /home/benchmark/working_dir/main:62148/mpil_find_pore_ahelical/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mpil_find_pore_ahelical/log /home/benchmark/working_dir/main:62148/mpil_find_pore_ahelical/log 14c14 < core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mpil_find_pore_bbarrel 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mpil_find_pore_bbarrel/log and /home/benchmark/working_dir/main:62148/mpil_find_pore_bbarrel/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mpil_find_pore_bbarrel/log /home/benchmark/working_dir/main:62148/mpil_find_pore_bbarrel/log 14c14 < core.import_pose.import_pose: File 'inputs/1KMO_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1KMO_native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mpil_load_implicit_lipids 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mpil_load_implicit_lipids/log and /home/benchmark/working_dir/main:62148/mpil_load_implicit_lipids/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mpil_load_implicit_lipids/log /home/benchmark/working_dir/main:62148/mpil_load_implicit_lipids/log 14c14 < core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mr_protocols 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mr_protocols/log and /home/benchmark/working_dir/main:62148/mr_protocols/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mr_protocols/log /home/benchmark/working_dir/main:62148/mr_protocols/log 72c72 < core.import_pose.import_pose: File 'inputs/2qo4.PHASER.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/2qo4.PHASER.1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.mutate 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/mutate/log and /home/benchmark/working_dir/main:62148/mutate/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mutate/log /home/benchmark/working_dir/main:62148/mutate/log 8c8 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ncaa_fixbb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ncaa_fixbb/log and /home/benchmark/working_dir/main:62148/ncaa_fixbb/log differ Files /home/benchmark/working_dir/main:62147/ncaa_fixbb/log_tcre and /home/benchmark/working_dir/main:62148/ncaa_fixbb/log_tcre differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ncaa_fixbb/log /home/benchmark/working_dir/main:62148/ncaa_fixbb/log 27c27 < core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ncaa_fixbb/log_tcre /home/benchmark/working_dir/main:62148/ncaa_fixbb/log_tcre 29c29 < core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ncbb_packer_palette 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ncbb_packer_palette/log_cycpep_beta_aramid and /home/benchmark/working_dir/main:62148/ncbb_packer_palette/log_cycpep_beta_aramid differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ncbb_packer_palette/log_cycpep_beta_aramid /home/benchmark/working_dir/main:62148/ncbb_packer_palette/log_cycpep_beta_aramid 35c35 < core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents. 101c101 < core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents. 127c127 < core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents. 153c153 < core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.netcharge_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/netcharge_design/log and /home/benchmark/working_dir/main:62148/netcharge_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/netcharge_design/log /home/benchmark/working_dir/main:62148/netcharge_design/log 37c37 < core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.netcharge_design_symm 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/netcharge_design_symm/log and /home/benchmark/working_dir/main:62148/netcharge_design_symm/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/netcharge_design_symm/log /home/benchmark/working_dir/main:62148/netcharge_design_symm/log 37c37 < core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.next_generation_KIC 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/next_generation_KIC/log and /home/benchmark/working_dir/main:62148/next_generation_KIC/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/next_generation_KIC/log /home/benchmark/working_dir/main:62148/next_generation_KIC/log 43c43 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 66c66 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.non-canonical_connectivities 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/non-canonical_connectivities/log and /home/benchmark/working_dir/main:62148/non-canonical_connectivities/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/non-canonical_connectivities/log /home/benchmark/working_dir/main:62148/non-canonical_connectivities/log 8c8 < core.import_pose.import_pose: File 'input/lactam.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/lactam.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.nonideal_rtmin 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack differ Files /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack_cart and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack_cart differ Files /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin differ Files /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin_cart and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin_cart differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack 14c14 < core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack_cart /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack_cart 14c14 < core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin 14c14 < core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin_cart /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin_cart 14c14 < core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.oligourea_predict 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/oligourea_predict/log1 and /home/benchmark/working_dir/main:62148/oligourea_predict/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oligourea_predict/log1 /home/benchmark/working_dir/main:62148/oligourea_predict/log1 40c40 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.oop_create 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/oop_create/log and /home/benchmark/working_dir/main:62148/oop_create/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oop_create/log /home/benchmark/working_dir/main:62148/oop_create/log 14c14 < core.import_pose.import_pose: File 'input/ala4_pep.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/ala4_pep.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.oop_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/oop_design/log and /home/benchmark/working_dir/main:62148/oop_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oop_design/log /home/benchmark/working_dir/main:62148/oop_design/log 14c14 < core.import_pose.import_pose: File './inputs/mdm2_oopAAAA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './inputs/mdm2_oopAAAA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.oop_dock_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/oop_dock_design/log and /home/benchmark/working_dir/main:62148/oop_dock_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oop_dock_design/log /home/benchmark/working_dir/main:62148/oop_dock_design/log 27c27 < core.import_pose.import_pose: File 'input/mdm2_oop.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/mdm2_oop.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.orbitals 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/orbitals/log and /home/benchmark/working_dir/main:62148/orbitals/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/orbitals/log /home/benchmark/working_dir/main:62148/orbitals/log 35c35 < core.import_pose.import_pose: File 'input/1thfD.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1thfD.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pH_mode 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pH_mode/log and /home/benchmark/working_dir/main:62148/pH_mode/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pH_mode/log /home/benchmark/working_dir/main:62148/pH_mode/log 14c14 < core.import_pose.import_pose: File '2OVO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2OVO.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pepspec 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pepspec/log and /home/benchmark/working_dir/main:62148/pepspec/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pepspec/log /home/benchmark/working_dir/main:62148/pepspec/log 28c28 < core.import_pose.import_pose: File 'input/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pepspec_anchor_dock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pepspec_anchor_dock/log and /home/benchmark/working_dir/main:62148/pepspec_anchor_dock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pepspec_anchor_dock/log /home/benchmark/working_dir/main:62148/pepspec_anchor_dock/log 8c8 < core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB from contents. 44c44 < core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB from contents. 61c61 < core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB from contents. 78c78 < core.import_pose.import_pose: File 'input/1CKA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1CKA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.peptiderive 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/peptiderive/log_peptiderive and /home/benchmark/working_dir/main:62148/peptiderive/log_peptiderive differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/peptiderive/log_peptiderive /home/benchmark/working_dir/main:62148/peptiderive/log_peptiderive 36c36 < core.import_pose.import_pose: File '3gxu_remixed_min.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3gxu_remixed_min.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.per_residue_energies 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/per_residue_energies/log and /home/benchmark/working_dir/main:62148/per_residue_energies/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/per_residue_energies/log /home/benchmark/working_dir/main:62148/per_residue_energies/log 29c29 < core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.per_residue_sc_sasa 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/per_residue_sc_sasa/log and /home/benchmark/working_dir/main:62148/per_residue_sc_sasa/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/per_residue_sc_sasa/log /home/benchmark/working_dir/main:62148/per_residue_sc_sasa/log 8c8 < core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.per_residue_solvent_exposure 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/per_residue_solvent_exposure/log and /home/benchmark/working_dir/main:62148/per_residue_solvent_exposure/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/per_residue_solvent_exposure/log /home/benchmark/working_dir/main:62148/per_residue_solvent_exposure/log 9c9 < core.import_pose.import_pose: File '1dwr_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1dwr_A.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pertmin 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pertmin/log and /home/benchmark/working_dir/main:62148/pertmin/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pertmin/log /home/benchmark/working_dir/main:62148/pertmin/log 14c14 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 101c101 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents. 110c110 < core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.phiselector 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/phiselector/log and /home/benchmark/working_dir/main:62148/phiselector/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/phiselector/log /home/benchmark/working_dir/main:62148/phiselector/log 38c38 < core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.phosphonate 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/phosphonate/log_ACE_k26 and /home/benchmark/working_dir/main:62148/phosphonate/log_ACE_k26 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/phosphonate/log_ACE_k26 /home/benchmark/working_dir/main:62148/phosphonate/log_ACE_k26 37c37 < core.import_pose.import_pose: File 'input/2xhm_AnCE_k26_clean.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2xhm_AnCE_k26_clean.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.place_simultaneously 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/place_simultaneously/log and /home/benchmark/working_dir/main:62148/place_simultaneously/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/place_simultaneously/log /home/benchmark/working_dir/main:62148/place_simultaneously/log 14c14 < core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pna 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pna/log and /home/benchmark/working_dir/main:62148/pna/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pna/log /home/benchmark/working_dir/main:62148/pna/log 60c60 < core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB from contents. 1090c1090 < core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pna_base_pairs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pna_base_pairs/log and /home/benchmark/working_dir/main:62148/pna_base_pairs/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pna_base_pairs/log /home/benchmark/working_dir/main:62148/pna_base_pairs/log 14c14 < core.import_pose.import_pose: File 'RAD.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'RAD.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pocket_measure 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pocket_measure/log and /home/benchmark/working_dir/main:62148/pocket_measure/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pocket_measure/log /home/benchmark/working_dir/main:62148/pocket_measure/log 8c8 < core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pocket_relax 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pocket_relax/log and /home/benchmark/working_dir/main:62148/pocket_relax/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pocket_relax/log /home/benchmark/working_dir/main:62148/pocket_relax/log 63c63 < core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pocket_suggest_targets 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pocket_suggest_targets/log and /home/benchmark/working_dir/main:62148/pocket_suggest_targets/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pocket_suggest_targets/log /home/benchmark/working_dir/main:62148/pocket_suggest_targets/log 8c8 < core.import_pose.import_pose: File 'input/2xa0_complex.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/2xa0_complex.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pose_sewing 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pose_sewing/makesegmentfile_log and /home/benchmark/working_dir/main:62148/pose_sewing/makesegmentfile_log differ Files /home/benchmark/working_dir/main:62147/pose_sewing/pose_sewing_log and /home/benchmark/working_dir/main:62148/pose_sewing/pose_sewing_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pose_sewing/makesegmentfile_log /home/benchmark/working_dir/main:62148/pose_sewing/makesegmentfile_log 8c8 < core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pose_sewing/pose_sewing_log /home/benchmark/working_dir/main:62148/pose_sewing/pose_sewing_log 352c352 < core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_1.pdb' automatically determined to be of type PDB from contents. 363c363 < core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.posttranslationalmod_io 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/posttranslationalmod_io/log and /home/benchmark/working_dir/main:62148/posttranslationalmod_io/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/posttranslationalmod_io/log /home/benchmark/working_dir/main:62148/posttranslationalmod_io/log 25c25 < core.import_pose.import_pose: File '0AZ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '0AZ.pdb' automatically determined to be of type PDB from contents. 102c102 < core.import_pose.import_pose: File 'ALY.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ALY.pdb' automatically determined to be of type PDB from contents. 138c138 < core.import_pose.import_pose: File 'HYP.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'HYP.pdb' automatically determined to be of type PDB from contents. 174c174 < core.import_pose.import_pose: File 'M3L.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'M3L.pdb' automatically determined to be of type PDB from contents. 210c210 < core.import_pose.import_pose: File 'MLY.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'MLY.pdb' automatically determined to be of type PDB from contents. 246c246 < core.import_pose.import_pose: File 'MLZ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'MLZ.pdb' automatically determined to be of type PDB from contents. 282c282 < core.import_pose.import_pose: File 'PTR.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'PTR.pdb' automatically determined to be of type PDB from contents. 318c318 < core.import_pose.import_pose: File 'SCY.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'SCY.pdb' automatically determined to be of type PDB from contents. 354c354 < core.import_pose.import_pose: File 'SEP.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'SEP.pdb' automatically determined to be of type PDB from contents. 390c390 < core.import_pose.import_pose: File 'TPO.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TPO.pdb' automatically determined to be of type PDB from contents. 426c426 < core.import_pose.import_pose: File 'TYI.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TYI.pdb' automatically determined to be of type PDB from contents. 462c462 < core.import_pose.import_pose: File 'TYS.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TYS.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppi_v3_suiteA 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppi_v3_suiteA/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteA/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteA/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteA/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppi_v3_suiteB 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppi_v3_suiteB/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteB/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteB/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteB/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppi_v3_suiteC 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppi_v3_suiteC/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteC/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteC/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteC/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppi_v3_suiteD 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppi_v3_suiteD/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteD/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteD/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteD/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppi_v3_suiteE 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppi_v3_suiteE/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteE/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteE/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteE/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppi_v3_suiteF 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppi_v3_suiteF/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteF/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteF/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteF/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppi_v3_suiteG 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppi_v3_suiteG/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteG/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteG/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteG/log 14c14 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.ppk 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ppk/log and /home/benchmark/working_dir/main:62148/ppk/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppk/log /home/benchmark/working_dir/main:62148/ppk/log 14c14 < core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.protocol_metric 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/protocol_metric/log and /home/benchmark/working_dir/main:62148/protocol_metric/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/protocol_metric/log /home/benchmark/working_dir/main:62148/protocol_metric/log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 100c100 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pwsho 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pwsho/log and /home/benchmark/working_dir/main:62148/pwsho/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pwsho/log /home/benchmark/working_dir/main:62148/pwsho/log 62c62 < core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.pymol_cif 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/pymol_cif/log and /home/benchmark/working_dir/main:62148/pymol_cif/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pymol_cif/log /home/benchmark/working_dir/main:62148/pymol_cif/log 38c38 < core.import_pose.import_pose: File '1qys_pymol.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1qys_pymol.cif' automatically determined to be of type mmCIF from contents. 44c44 < core.import_pose.import_pose: File '1qys_pymol_mod.cif' automatically determined to be of type mmCIF --- > core.import_pose.import_pose: File '1qys_pymol_mod.cif' automatically determined to be of type mmCIF from contents.

mac.clang.python39.integration.ralford_dump_rotamers 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/ralford_dump_rotamers/log and /home/benchmark/working_dir/main:62148/ralford_dump_rotamers/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ralford_dump_rotamers/log /home/benchmark/working_dir/main:62148/ralford_dump_rotamers/log 14c14 < core.import_pose.import_pose: File 'inputs/GGQGG_linear.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/GGQGG_linear.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.range_relax_w_cst 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/range_relax_w_cst/log and /home/benchmark/working_dir/main:62148/range_relax_w_cst/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/range_relax_w_cst/log /home/benchmark/working_dir/main:62148/range_relax_w_cst/log 30c30 < core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB from contents. 36c36 < core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB from contents. 42c42 < core.import_pose.import_pose: File 'inputs/1F3Y_A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1F3Y_A.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rb_recces 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rb_recces/log and /home/benchmark/working_dir/main:62148/rb_recces/log differ Files /home/benchmark/working_dir/main:62147/rb_recces/log2 and /home/benchmark/working_dir/main:62148/rb_recces/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rb_recces/log /home/benchmark/working_dir/main:62148/rb_recces/log 8c8 < core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rb_recces/log2 /home/benchmark/working_dir/main:62148/rb_recces/log2 8c8 < core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rdkit_metrics 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rdkit_metrics/log and /home/benchmark/working_dir/main:62148/rdkit_metrics/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rdkit_metrics/log /home/benchmark/working_dir/main:62148/rdkit_metrics/log 14c14 < core.import_pose.import_pose: File '7cpa_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '7cpa_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.readin_dna_rna_protein 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/log and /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/log differ Files /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/noHOH.log and /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/noHOH.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/log /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/log 63c63 < core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB from contents. 192c192 < core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/noHOH.log /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/noHOH.log 63c63 < core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB from contents. 192c192 < core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.real_virt_mover 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/real_virt_mover/info.log and /home/benchmark/working_dir/main:62148/real_virt_mover/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/real_virt_mover/info.log /home/benchmark/working_dir/main:62148/real_virt_mover/info.log 14c14 < core.import_pose.import_pose: File '9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.recon_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/recon_design/log and /home/benchmark/working_dir/main:62148/recon_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/recon_design/log /home/benchmark/working_dir/main:62148/recon_design/log 15c15 < core.import_pose.import_pose: File '1avz.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1avz.pdb.gz' automatically determined to be of type PDB from contents. 18c18 < core.import_pose.import_pose: File '1m27.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1m27.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.relax_w_allatom_cst 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log and /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log differ Files /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log_native and /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log_native differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log 66c66 < core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log_native /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log_native 87c87 < core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB from contents. 493c493 < core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB from contents. 497c497 < core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.remodel 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/remodel/log1 and /home/benchmark/working_dir/main:62148/remodel/log1 differ Files /home/benchmark/working_dir/main:62147/remodel/log2 and /home/benchmark/working_dir/main:62148/remodel/log2 differ Files /home/benchmark/working_dir/main:62147/remodel/log3 and /home/benchmark/working_dir/main:62148/remodel/log3 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel/log1 /home/benchmark/working_dir/main:62148/remodel/log1 37c37 < core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel/log2 /home/benchmark/working_dir/main:62148/remodel/log2 37c37 < core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel/log3 /home/benchmark/working_dir/main:62148/remodel/log3 37c37 < core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents. 201c201 < core.import_pose.import_pose: File '2ci2.insert.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ci2.insert.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.remodel_disulfides 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/remodel_disulfides/log2 and /home/benchmark/working_dir/main:62148/remodel_disulfides/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_disulfides/log2 /home/benchmark/working_dir/main:62148/remodel_disulfides/log2 37c37 < core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.remodel_disulfides_rosettascripts 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/remodel_disulfides_rosettascripts/log and /home/benchmark/working_dir/main:62148/remodel_disulfides_rosettascripts/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_disulfides_rosettascripts/log /home/benchmark/working_dir/main:62148/remodel_disulfides_rosettascripts/log 32c32 < core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.remodel_helical_repeat 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log1 and /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log1 differ Files /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log2 and /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log1 /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log1 14c14 < core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents. 844c844 < core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log2 /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log2 14c14 < core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents. 844c844 < core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.repack_with_elec_dens 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/repack_with_elec_dens/log and /home/benchmark/working_dir/main:62148/repack_with_elec_dens/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/repack_with_elec_dens/log /home/benchmark/working_dir/main:62148/repack_with_elec_dens/log 14c14 < core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.report_hbonds_for_plugin 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/report_hbonds_for_plugin/report_hbonds_for_plugin.log and /home/benchmark/working_dir/main:62148/report_hbonds_for_plugin/report_hbonds_for_plugin.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/report_hbonds_for_plugin/report_hbonds_for_plugin.log /home/benchmark/working_dir/main:62148/report_hbonds_for_plugin/report_hbonds_for_plugin.log 19c19 < core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.res_lipo_ref2015_memb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/res_lipo_ref2015_memb/run_log and /home/benchmark/working_dir/main:62148/res_lipo_ref2015_memb/run_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/res_lipo_ref2015_memb/run_log /home/benchmark/working_dir/main:62148/res_lipo_ref2015_memb/run_log 15c15 < core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.residue_energy_breakdown 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log and /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log differ Files /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_cst and /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_cst differ Files /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_perres and /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_perres differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log 29c29 < core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_cst /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_cst 29c29 < core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_perres /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_perres 29c29 < core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_assemble 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_assemble/log and /home/benchmark/working_dir/main:62148/rna_assemble/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_assemble/log /home/benchmark/working_dir/main:62148/rna_assemble/log 82c82 < core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB from contents. 88c88 < core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB from contents. 109c109 < core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo/log and /home/benchmark/working_dir/main:62148/rna_denovo/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo/log /home/benchmark/working_dir/main:62148/rna_denovo/log 15c15 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 21c21 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 23c23 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_RNP_low_res 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_RNP_low_res/log and /home/benchmark/working_dir/main:62148/rna_denovo_RNP_low_res/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_RNP_low_res/log /home/benchmark/working_dir/main:62148/rna_denovo_RNP_low_res/log 14c14 < core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents. 16,17c16,17 < core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents. 62,63c62,63 < core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_RNP_refine_native 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_RNP_refine_native/log and /home/benchmark/working_dir/main:62148/rna_denovo_RNP_refine_native/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_RNP_refine_native/log /home/benchmark/working_dir/main:62148/rna_denovo_RNP_refine_native/log 15c15 < core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File 'center_0_r10_complex.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'center_0_r10_complex.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_bps 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_bps/log and /home/benchmark/working_dir/main:62148/rna_denovo_bps/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_bps/log /home/benchmark/working_dir/main:62148/rna_denovo_bps/log 16c16 < core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents. 23c23 < core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_bps_fixed_ends 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_bps_fixed_ends/log and /home/benchmark/working_dir/main:62148/rna_denovo_bps_fixed_ends/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_bps_fixed_ends/log /home/benchmark/working_dir/main:62148/rna_denovo_bps_fixed_ends/log 14c14 < core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 18,19c18,19 < core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 24c24 < core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 46c46 < core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_bps_helix_ends 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_bps_helix_ends/log and /home/benchmark/working_dir/main:62148/rna_denovo_bps_helix_ends/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_bps_helix_ends/log /home/benchmark/working_dir/main:62148/rna_denovo_bps_helix_ends/log 13,14c13,14 < core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB from contents. 18,19c18,19 < core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 25c25 < core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 47,48c47,48 < core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_dna_bridge 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_dna_bridge/log and /home/benchmark/working_dir/main:62148/rna_denovo_dna_bridge/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_dna_bridge/log /home/benchmark/working_dir/main:62148/rna_denovo_dna_bridge/log 13c13 < core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB from contents. 37c37 < core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_fragment_homology_exclusion 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_fragment_homology_exclusion/log and /home/benchmark/working_dir/main:62148/rna_denovo_fragment_homology_exclusion/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_fragment_homology_exclusion/log /home/benchmark/working_dir/main:62148/rna_denovo_fragment_homology_exclusion/log 15c15 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 21c21 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 23c23 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_grid_vdw 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_grid_vdw/log and /home/benchmark/working_dir/main:62148/rna_denovo_grid_vdw/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_grid_vdw/log /home/benchmark/working_dir/main:62148/rna_denovo_grid_vdw/log 14c14 < core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents. 25c25 < core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents. 55c55 < core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_new_FT_2in_dens 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_2in_dens/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_2in_dens/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_2in_dens/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_2in_dens/log 15,16c15,16 < core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB from contents. 39,40c39,40 < core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_new_FT_5P_j12_leadzyme 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_5P_j12_leadzyme/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_5P_j12_leadzyme/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_5P_j12_leadzyme/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_5P_j12_leadzyme/log 14c14 < core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB from contents. 20,21c20,21 < core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB from contents. 57c57 < core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents. 198,199c198,199 < core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_new_FT_RNP_2prot_dens 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_RNP_2prot_dens/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_RNP_2prot_dens/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_RNP_2prot_dens/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_RNP_2prot_dens/log 15c15 < core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents. 57c57 < core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB from contents. 61c61 < core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_new_FT_rna_two_chains 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_rna_two_chains/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_rna_two_chains/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_rna_two_chains/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_rna_two_chains/log 14c14 < core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents. 42c42 < core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_denovo_new_libs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_denovo_new_libs/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_libs/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_libs/log /home/benchmark/working_dir/main:62148/rna_denovo_new_libs/log 15c15 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 21c21 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 23c23 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_design/log and /home/benchmark/working_dir/main:62148/rna_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_design/log /home/benchmark/working_dir/main:62148/rna_design/log 13c13 < core.import_pose.import_pose: File 'chunk001_uucg_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk001_uucg_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_farfar_noncanonical_hairpin 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log and /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log differ Files /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log_new_ft and /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log_new_ft differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log 16c16 < core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents. 44c44 < core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log_new_ft /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log_new_ft 15c15 < core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_minimize 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_minimize/log and /home/benchmark/working_dir/main:62148/rna_minimize/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_minimize/log /home/benchmark/working_dir/main:62148/rna_minimize/log 14c14 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_motif 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_motif/log and /home/benchmark/working_dir/main:62148/rna_motif/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_motif/log /home/benchmark/working_dir/main:62148/rna_motif/log 24c24 < core.import_pose.import_pose: File '1Q9A.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1Q9A.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File '1ehz.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ehz.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File '1ehz_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ehz_RNA.pdb' automatically determined to be of type PDB from contents. 109c109 < core.import_pose.import_pose: File '1fmn_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1fmn_RNA.pdb' automatically determined to be of type PDB from contents. 124c124 < core.import_pose.import_pose: File '1gid_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1gid_RNA.pdb' automatically determined to be of type PDB from contents. 145c145 < core.import_pose.import_pose: File '1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1raw_RNA.pdb' automatically determined to be of type PDB from contents. 159c159 < core.import_pose.import_pose: File '1xjr_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1xjr_RNA.pdb' automatically determined to be of type PDB from contents. 186c186 < core.import_pose.import_pose: File '2gis_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2gis_RNA.pdb' automatically determined to be of type PDB from contents. 205c205 < core.import_pose.import_pose: File '2lx1_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2lx1_RNA.pdb' automatically determined to be of type PDB from contents. 215c215 < core.import_pose.import_pose: File '2oeu_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2oeu_RNA.pdb' automatically determined to be of type PDB from contents. 245c245 < core.import_pose.import_pose: File '3f2q_RNA_with_FMN.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3f2q_RNA_with_FMN.pdb' automatically determined to be of type PDB from contents. 346c346 < core.import_pose.import_pose: File '3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 364c364 < core.import_pose.import_pose: File '3p49_native_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3p49_native_RNA.pdb' automatically determined to be of type PDB from contents. 381c381 < core.import_pose.import_pose: File '3P49_erraser.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3P49_erraser.pdb' automatically determined to be of type PDB from contents. 411c411 < core.import_pose.import_pose: File '4lck_tbox_RNABC.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4lck_tbox_RNABC.pdb' automatically determined to be of type PDB from contents. 460c460 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 471c471 < core.import_pose.import_pose: File '11-nt-ac_model1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '11-nt-ac_model1.pdb' automatically determined to be of type PDB from contents. 488c488 < core.import_pose.import_pose: File '11-nt_model1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '11-nt_model1.pdb' automatically determined to be of type PDB from contents. 505c505 < core.import_pose.import_pose: File 'R1_model1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'R1_model1.pdb' automatically determined to be of type PDB from contents. 521c521 < core.import_pose.import_pose: File 'c7.10_model1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'c7.10_model1.pdb' automatically determined to be of type PDB from contents. 538c538 < core.import_pose.import_pose: File 'c7.2_model1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'c7.2_model1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_predict_chem_map 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_predict_chem_map/log and /home/benchmark/working_dir/main:62148/rna_predict_chem_map/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_predict_chem_map/log /home/benchmark/working_dir/main:62148/rna_predict_chem_map/log 8c8 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_puzzle11_H2H3H4_run3_connectU40 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_puzzle11_H2H3H4_run3_connectU40/log and /home/benchmark/working_dir/main:62148/rna_puzzle11_H2H3H4_run3_connectU40/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle11_H2H3H4_run3_connectU40/log /home/benchmark/working_dir/main:62148/rna_puzzle11_H2H3H4_run3_connectU40/log 14,15c14,15 < core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB from contents. 18c18 < core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB from contents. 22c22 < core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB from contents. 28c28 < core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB from contents. 50,51c50,51 < core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_puzzle12_P5P6P7_DMS 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_puzzle12_P5P6P7_DMS/log and /home/benchmark/working_dir/main:62148/rna_puzzle12_P5P6P7_DMS/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle12_P5P6P7_DMS/log /home/benchmark/working_dir/main:62148/rna_puzzle12_P5P6P7_DMS/log 17c17 < core.import_pose.import_pose: File './P5P6P7_sol.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File './P5P6P7_sol.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log and /home/benchmark/working_dir/main:62148/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log /home/benchmark/working_dir/main:62148/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log 15c15 < core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB from contents. 22c22 < core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents. 30c30 < core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB from contents. 68c68 < core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB from contents. 72c72 < core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents. 76c76 < core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents. 80c80 < core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_puzzle6_U75G76A77_on_thread1 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_puzzle6_U75G76A77_on_thread1/log and /home/benchmark/working_dir/main:62148/rna_puzzle6_U75G76A77_on_thread1/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle6_U75G76A77_on_thread1/log /home/benchmark/working_dir/main:62148/rna_puzzle6_U75G76A77_on_thread1/log 16c16 < core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_puzzle6_j67_into_p6p7rigidbody_thread1 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log and /home/benchmark/working_dir/main:62148/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log /home/benchmark/working_dir/main:62148/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log 15c15 < core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_ribosome_tether 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_ribosome_tether/log and /home/benchmark/working_dir/main:62148/rna_ribosome_tether/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_ribosome_tether/log /home/benchmark/working_dir/main:62148/rna_ribosome_tether/log 13c13 < core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB from contents. 44c44 < core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_score 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_score/log and /home/benchmark/working_dir/main:62148/rna_score/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_score/log /home/benchmark/working_dir/main:62148/rna_score/log 14c14 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rna_screen_phosphates 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rna_screen_phosphates/log and /home/benchmark/working_dir/main:62148/rna_screen_phosphates/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_screen_phosphates/log /home/benchmark/working_dir/main:62148/rna_screen_phosphates/log 13c13 < core.import_pose.import_pose: File 'nobulge_motif_solution_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'nobulge_motif_solution_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rnp_ddg_calc_mut 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rnp_ddg_calc_mut/log and /home/benchmark/working_dir/main:62148/rnp_ddg_calc_mut/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_calc_mut/log /home/benchmark/working_dir/main:62148/rnp_ddg_calc_mut/log 9c9 < core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rnp_ddg_calc_wt 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rnp_ddg_calc_wt/log and /home/benchmark/working_dir/main:62148/rnp_ddg_calc_wt/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_calc_wt/log /home/benchmark/working_dir/main:62148/rnp_ddg_calc_wt/log 9c9 < core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rnp_ddg_relax_command_1 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_1/log and /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_1/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_1/log /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_1/log 24c24 < core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rnp_ddg_relax_command_2 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_2/log and /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_2/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_2/log /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_2/log 9c9 < core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rollmover 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rollmover/log and /home/benchmark/working_dir/main:62148/rollmover/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rollmover/log /home/benchmark/working_dir/main:62148/rollmover/log 14c14 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 87c87 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 98c98 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 109c109 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 120c120 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 131c131 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 142c142 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 153c153 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 164c164 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents. 175c175 < core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rosetta_scripts_include 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log1 and /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log1 differ Files /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log2 and /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log1 /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log1 38c38 < core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log2 /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log2 38c38 < core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rosetta_scripts_loops 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rosetta_scripts_loops/log_db_output and /home/benchmark/working_dir/main:62148/rosetta_scripts_loops/log_db_output differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_loops/log_db_output /home/benchmark/working_dir/main:62148/rosetta_scripts_loops/log_db_output 14c14 < core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rosetta_scripts_setup 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rosetta_scripts_setup/log and /home/benchmark/working_dir/main:62148/rosetta_scripts_setup/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_setup/log /home/benchmark/working_dir/main:62148/rosetta_scripts_setup/log 14c14 < core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rosie_ligand_docking 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log and /home/benchmark/working_dir/main:62148/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log /home/benchmark/working_dir/main:62148/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log 14c14 < core.import_pose.import_pose: File '../../input/protein.pdb ../../output/trigger-00000.molfile_to_params/LG.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../input/protein.pdb ../../output/trigger-00000.molfile_to_params/LG.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rotamer_probability 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rotamer_probability/log and /home/benchmark/working_dir/main:62148/rotamer_probability/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rotamer_probability/log /home/benchmark/working_dir/main:62148/rotamer_probability/log 14c14 < core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rotamer_recovery_compare_two_structures 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rotamer_recovery_compare_two_structures/log and /home/benchmark/working_dir/main:62148/rotamer_recovery_compare_two_structures/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rotamer_recovery_compare_two_structures/log /home/benchmark/working_dir/main:62148/rotamer_recovery_compare_two_structures/log 32c32 < core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB from contents. 36c36 < core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rs_flexbbmoves 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rs_flexbbmoves/log and /home/benchmark/working_dir/main:62148/rs_flexbbmoves/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rs_flexbbmoves/log /home/benchmark/working_dir/main:62148/rs_flexbbmoves/log 14c14 < core.import_pose.import_pose: File 'input/1elwAC.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1elwAC.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.rs_loophash 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/rs_loophash/log and /home/benchmark/working_dir/main:62148/rs_loophash/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rs_loophash/log /home/benchmark/working_dir/main:62148/rs_loophash/log 14c14 < core.import_pose.import_pose: File 'in/pdb.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'in/pdb.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.sample_seq_from_probs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/sample_seq_from_probs/log and /home/benchmark/working_dir/main:62148/sample_seq_from_probs/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sample_seq_from_probs/log /home/benchmark/working_dir/main:62148/sample_seq_from_probs/log 14c14 < core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.sasa_metric_options 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/sasa_metric_options/log and /home/benchmark/working_dir/main:62148/sasa_metric_options/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sasa_metric_options/log /home/benchmark/working_dir/main:62148/sasa_metric_options/log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 88c88 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.score12_docking 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/score12_docking/log and /home/benchmark/working_dir/main:62148/score12_docking/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score12_docking/log /home/benchmark/working_dir/main:62148/score12_docking/log 14c14 < core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.score_jd2 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/score_jd2/log_jscore and /home/benchmark/working_dir/main:62148/score_jd2/log_jscore differ Files /home/benchmark/working_dir/main:62147/score_jd2/log_score_jd2 and /home/benchmark/working_dir/main:62148/score_jd2/log_score_jd2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score_jd2/log_jscore /home/benchmark/working_dir/main:62148/score_jd2/log_jscore 31,32c31,32 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score_jd2/log_score_jd2 /home/benchmark/working_dir/main:62148/score_jd2/log_score_jd2 38c38 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents. 46c46 < core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.score_only_silence 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/score_only_silence/log and /home/benchmark/working_dir/main:62148/score_only_silence/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score_only_silence/log /home/benchmark/working_dir/main:62148/score_only_silence/log 14c14 < core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.sdf_reader 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/sdf_reader/log and /home/benchmark/working_dir/main:62148/sdf_reader/log differ Files /home/benchmark/working_dir/main:62147/sdf_reader/min_log and /home/benchmark/working_dir/main:62148/sdf_reader/min_log differ Files /home/benchmark/working_dir/main:62147/sdf_reader/molscore_log and /home/benchmark/working_dir/main:62148/sdf_reader/molscore_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sdf_reader/log /home/benchmark/working_dir/main:62148/sdf_reader/log 15c15 < core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sdf_reader/min_log /home/benchmark/working_dir/main:62148/sdf_reader/min_log 15c15 < core.import_pose.import_pose: File 'inputs/7cpa_ligand.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_ligand.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sdf_reader/molscore_log /home/benchmark/working_dir/main:62148/sdf_reader/molscore_log 38c38 < core.import_pose.import_pose: File 'inputs/CP1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/CP1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.secondary_structure_output 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/secondary_structure_output/log and /home/benchmark/working_dir/main:62148/secondary_structure_output/log differ Files /home/benchmark/working_dir/main:62147/secondary_structure_output/log_nonauto and /home/benchmark/working_dir/main:62148/secondary_structure_output/log_nonauto differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/secondary_structure_output/log /home/benchmark/working_dir/main:62148/secondary_structure_output/log 14c14 < core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/secondary_structure_output/log_nonauto /home/benchmark/working_dir/main:62148/secondary_structure_output/log_nonauto 14c14 < core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.seed_ensemble_JD2_JI 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/seed_ensemble_JD2_JI/log and /home/benchmark/working_dir/main:62148/seed_ensemble_JD2_JI/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/seed_ensemble_JD2_JI/log /home/benchmark/working_dir/main:62148/seed_ensemble_JD2_JI/log 17c17 < core.import_pose.import_pose: File 'input/9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB from contents. 447c447 < core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents. 576c576 < core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents. 636c636 < core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents. 708c708 < core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents. 785c785 < core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents. 855c855 < core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents. 925c925 < core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.selected_residue_count_metric 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/selected_residue_count_metric/log and /home/benchmark/working_dir/main:62148/selected_residue_count_metric/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/selected_residue_count_metric/log /home/benchmark/working_dir/main:62148/selected_residue_count_metric/log 37c37 < core.import_pose.import_pose: File 'inputs/testpose.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/testpose.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.sequence_tolerance 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/sequence_tolerance/log and /home/benchmark/working_dir/main:62148/sequence_tolerance/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sequence_tolerance/log /home/benchmark/working_dir/main:62148/sequence_tolerance/log 8c8 < core.import_pose.import_pose: File 'input/1N7T_01.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1N7T_01.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.shobuns 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/shobuns/log and /home/benchmark/working_dir/main:62148/shobuns/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/shobuns/log /home/benchmark/working_dir/main:62148/shobuns/log 8c8 < core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.sim_cryo 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/sim_cryo/log and /home/benchmark/working_dir/main:62148/sim_cryo/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sim_cryo/log /home/benchmark/working_dir/main:62148/sim_cryo/log 8c8 < core.import_pose.import_pose: File 'inputs/1e6v.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1e6v.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict/log2 61c61 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_1_4_bbmb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_1_4_bbmb/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_1_4_bbmb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_1_4_bbmb/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_1_4_bbmb/log 61c61 < core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_angle 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_angle/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_angle/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_angle/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_angle/log2 72c72 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_anglelength 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_anglelength/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_anglelength/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_anglelength/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_anglelength/log2 72c72 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_cartesian 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_cartesian/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_cartesian/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_cartesian/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_cartesian/log2 72c72 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_nterm_isopeptide_lariat 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat/log1 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat/log1 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat/log1 66c66 < core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_nterm_isopeptide_lariat_tailless 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1 66c66 < core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_octahedral_metal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_octahedral_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_octahedral_metal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_octahedral_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_octahedral_metal/log 42c42 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_square_planar_metal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_planar_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_planar_metal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_planar_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_planar_metal/log 39c39 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_square_pyramidal_metal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_pyramidal_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_pyramidal_metal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_pyramidal_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_pyramidal_metal/log 39c39 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_symm_gly 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_symm_gly/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_symm_gly/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_symm_gly/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_symm_gly/log2 77c77 < core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_tbmb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tbmb/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tbmb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tbmb/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tbmb/log 61c61 < core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_tetrahedral_metal 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal/log 39c39 < core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_cycpep_predict_tetrahedral_metal_asp 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal_asp/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal_asp/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal_asp/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal_asp/log 39c39 < core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_glycosylation 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_glycosylation/info.log and /home/benchmark/working_dir/main:62148/simple_glycosylation/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_glycosylation/info.log /home/benchmark/working_dir/main:62148/simple_glycosylation/info.log 14c14 < core.import_pose.import_pose: File 'pareto_4JAN_CH103_GP120_renum_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'pareto_4JAN_CH103_GP120_renum_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_glycosylation_alternate_AAs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_glycosylation_alternate_AAs/info.log and /home/benchmark/working_dir/main:62148/simple_glycosylation_alternate_AAs/info.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_glycosylation_alternate_AAs/info.log /home/benchmark/working_dir/main:62148/simple_glycosylation_alternate_AAs/info.log 15c15 < core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_grafting_movers 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_grafting_movers/log and /home/benchmark/working_dir/main:62148/simple_grafting_movers/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_grafting_movers/log /home/benchmark/working_dir/main:62148/simple_grafting_movers/log 14c14 < core.import_pose.import_pose: File 'Start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'Start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_metric_cache 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_metric_cache/log and /home/benchmark/working_dir/main:62148/simple_metric_cache/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metric_cache/log /home/benchmark/working_dir/main:62148/simple_metric_cache/log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 86c86 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_metric_features 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_metric_features/log and /home/benchmark/working_dir/main:62148/simple_metric_features/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metric_features/log /home/benchmark/working_dir/main:62148/simple_metric_features/log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 88c88 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_metric_filter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_metric_filter/log and /home/benchmark/working_dir/main:62148/simple_metric_filter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metric_filter/log /home/benchmark/working_dir/main:62148/simple_metric_filter/log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 88c88 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_metrics 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_metrics/log and /home/benchmark/working_dir/main:62148/simple_metrics/log differ Files /home/benchmark/working_dir/main:62147/simple_metrics/name_as_ct_log and /home/benchmark/working_dir/main:62148/simple_metrics/name_as_ct_log differ Files /home/benchmark/working_dir/main:62147/simple_metrics/name_as_metric_log and /home/benchmark/working_dir/main:62148/simple_metrics/name_as_metric_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics/log /home/benchmark/working_dir/main:62148/simple_metrics/log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 96c96 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics/name_as_ct_log /home/benchmark/working_dir/main:62148/simple_metrics/name_as_ct_log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 96c96 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics/name_as_metric_log /home/benchmark/working_dir/main:62148/simple_metrics/name_as_metric_log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 96c96 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_metrics_b_factor 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_metrics_b_factor/log and /home/benchmark/working_dir/main:62148/simple_metrics_b_factor/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_b_factor/log /home/benchmark/working_dir/main:62148/simple_metrics_b_factor/log 14c14 < core.import_pose.import_pose: File 'inputs/3gml.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/3gml.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_metrics_in_protocols 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_metrics_in_protocols/log and /home/benchmark/working_dir/main:62148/simple_metrics_in_protocols/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_in_protocols/log /home/benchmark/working_dir/main:62148/simple_metrics_in_protocols/log 11c11 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents. 87c87 < core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.simple_metrics_per_residue 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log and /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log differ Files /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log2 and /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log 11c11 < core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB from contents. 67c67 < core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB from contents. 248c248 < core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log2 /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log2 11c11 < core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents. 40c40 < core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents. 119c119 < core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.site_constraint 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/site_constraint/log and /home/benchmark/working_dir/main:62148/site_constraint/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/site_constraint/log /home/benchmark/working_dir/main:62148/site_constraint/log 8c8 < core.import_pose.import_pose: File 'input/3AY4_modified.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/3AY4_modified.pdb' automatically determined to be of type PDB from contents. 85c85 < core.import_pose.import_pose: File 'input/4BJ0.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4BJ0.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.small_molecule_lattice_dock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/small_molecule_lattice_dock/log and /home/benchmark/working_dir/main:62148/small_molecule_lattice_dock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/small_molecule_lattice_dock/log /home/benchmark/working_dir/main:62148/small_molecule_lattice_dock/log 13c13 < core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents. 25c25 < core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents. 128c128 < core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_in_4loops_longer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_in_4loops_longer/log and /home/benchmark/working_dir/main:62148/splice_in_4loops_longer/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_in_4loops_longer/log /home/benchmark/working_dir/main:62148/splice_in_4loops_longer/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 147c147 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_in_4loops_shorter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_in_4loops_shorter/log and /home/benchmark/working_dir/main:62148/splice_in_4loops_shorter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_in_4loops_shorter/log /home/benchmark/working_dir/main:62148/splice_in_4loops_shorter/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 143c143 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_H1_H2_longer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_H1_H2_longer/log and /home/benchmark/working_dir/main:62148/splice_out_H1_H2_longer/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H1_H2_longer/log /home/benchmark/working_dir/main:62148/splice_out_H1_H2_longer/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '1Q9KB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1Q9KB.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_H1_H2_same 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_H1_H2_same/log and /home/benchmark/working_dir/main:62148/splice_out_H1_H2_same/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H1_H2_same/log /home/benchmark/working_dir/main:62148/splice_out_H1_H2_same/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '1AHWB.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1AHWB.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_H1_H2_shorter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_H1_H2_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_H1_H2_shorter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H1_H2_shorter/log /home/benchmark/working_dir/main:62148/splice_out_H1_H2_shorter/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '4O51B.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4O51B.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_H3_longer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_H3_longer/log and /home/benchmark/working_dir/main:62148/splice_out_H3_longer/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H3_longer/log /home/benchmark/working_dir/main:62148/splice_out_H3_longer/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '3SM5H.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '3SM5H.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_H3_same 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_H3_same/log and /home/benchmark/working_dir/main:62148/splice_out_H3_same/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H3_same/log /home/benchmark/working_dir/main:62148/splice_out_H3_same/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '2AABH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2AABH.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_H3_shorter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_H3_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_H3_shorter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H3_shorter/log /home/benchmark/working_dir/main:62148/splice_out_H3_shorter/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '1BFOH.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1BFOH.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_L1_L2_longer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_L1_L2_longer/log and /home/benchmark/working_dir/main:62148/splice_out_L1_L2_longer/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L1_L2_longer/log /home/benchmark/working_dir/main:62148/splice_out_L1_L2_longer/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '2Y6SL.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2Y6SL.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_L1_L2_same 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_L1_L2_same/log and /home/benchmark/working_dir/main:62148/splice_out_L1_L2_same/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L1_L2_same/log /home/benchmark/working_dir/main:62148/splice_out_L1_L2_same/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '2FX7L.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2FX7L.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_L1_L2_shorter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_L1_L2_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_L1_L2_shorter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L1_L2_shorter/log /home/benchmark/working_dir/main:62148/splice_out_L1_L2_shorter/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '2FD6L.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2FD6L.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_L3_longer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_L3_longer/log and /home/benchmark/working_dir/main:62148/splice_out_L3_longer/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L3_longer/log /home/benchmark/working_dir/main:62148/splice_out_L3_longer/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '4HT1L.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4HT1L.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_L3_same 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_L3_same/log and /home/benchmark/working_dir/main:62148/splice_out_L3_same/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L3_same/log /home/benchmark/working_dir/main:62148/splice_out_L3_same/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '4LVEA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4LVEA.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.splice_out_L3_shorter 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/splice_out_L3_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_L3_shorter/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L3_shorter/log /home/benchmark/working_dir/main:62148/splice_out_L3_shorter/log 12c12 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents. 148c148 < core.import_pose.import_pose: File '4LSTL.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4LSTL.pdb' automatically determined to be of type PDB from contents. 151c151 < core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.startfrom_file 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/startfrom_file/startfrom_mover_log and /home/benchmark/working_dir/main:62148/startfrom_file/startfrom_mover_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/startfrom_file/startfrom_mover_log /home/benchmark/working_dir/main:62148/startfrom_file/startfrom_mover_log 14c14 < core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.stepwise_lores 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/stepwise_lores/log and /home/benchmark/working_dir/main:62148/stepwise_lores/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/stepwise_lores/log /home/benchmark/working_dir/main:62148/stepwise_lores/log 20,22c20,22 < core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents. 25c25 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 27c27 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 29c29 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 31c31 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 36c36 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 38c38 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 40c40 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.stored_residue_subset 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/stored_residue_subset/log and /home/benchmark/working_dir/main:62148/stored_residue_subset/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/stored_residue_subset/log /home/benchmark/working_dir/main:62148/stored_residue_subset/log 38c38 < core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.struc_set_fragment_picker 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/struc_set_fragment_picker/log and /home/benchmark/working_dir/main:62148/struc_set_fragment_picker/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/struc_set_fragment_picker/log /home/benchmark/working_dir/main:62148/struc_set_fragment_picker/log 9c9 < core.import_pose.import_pose: File 'input/source_structures/2e42.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/2e42.pdb.gz' automatically determined to be of type PDB from contents. 11c11 < core.import_pose.import_pose: File 'input/source_structures/2e43.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/2e43.pdb.gz' automatically determined to be of type PDB from contents. 13c13 < core.import_pose.import_pose: File 'input/source_structures/2e7s.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/2e7s.pdb.gz' automatically determined to be of type PDB from contents. 15c15 < core.import_pose.import_pose: File 'input/source_structures/2ebo.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/2ebo.pdb.gz' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File 'input/source_structures/2eqb.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/2eqb.pdb.gz' automatically determined to be of type PDB from contents. 19c19 < core.import_pose.import_pose: File 'input/source_structures/2fxm.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/2fxm.pdb.gz' automatically determined to be of type PDB from contents. 46c46 < core.import_pose.import_pose: File 'input/source_structures/2fyz.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/2fyz.pdb.gz' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'input/source_structures/3b5n.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/3b5n.pdb.gz' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'input/source_structures/3bas.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/3bas.pdb.gz' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'input/source_structures/3coq.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/3coq.pdb.gz' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'input/source_structures/3cp1.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/source_structures/3cp1.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.super_aln 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/super_aln/log and /home/benchmark/working_dir/main:62148/super_aln/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/super_aln/log /home/benchmark/working_dir/main:62148/super_aln/log 8,9c8,9 < core.import_pose.import_pose: File 'input/A3RIY0_ECOLX.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/1BLS_0001.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/A3RIY0_ECOLX.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/1BLS_0001.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.supercharge 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/supercharge/log1 and /home/benchmark/working_dir/main:62148/supercharge/log1 differ Files /home/benchmark/working_dir/main:62147/supercharge/log2 and /home/benchmark/working_dir/main:62148/supercharge/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/supercharge/log1 /home/benchmark/working_dir/main:62148/supercharge/log1 14c14 < core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/supercharge/log2 /home/benchmark/working_dir/main:62148/supercharge/log2 14c14 < core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_protein_CCDclose 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_protein_CCDclose/log and /home/benchmark/working_dir/main:62148/swa_protein_CCDclose/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_CCDclose/log /home/benchmark/working_dir/main:62148/swa_protein_CCDclose/log 8c8 < core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_protein_build_at_Cterminus 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_protein_build_at_Cterminus/log and /home/benchmark/working_dir/main:62148/swa_protein_build_at_Cterminus/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_build_at_Cterminus/log /home/benchmark/working_dir/main:62148/swa_protein_build_at_Cterminus/log 8c8 < core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_protein_build_at_Nterminus 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_protein_build_at_Nterminus/log and /home/benchmark/working_dir/main:62148/swa_protein_build_at_Nterminus/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_build_at_Nterminus/log /home/benchmark/working_dir/main:62148/swa_protein_build_at_Nterminus/log 8c8 < core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_protein_combine_loops 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_protein_combine_loops/log and /home/benchmark/working_dir/main:62148/swa_protein_combine_loops/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_combine_loops/log /home/benchmark/working_dir/main:62148/swa_protein_combine_loops/log 8c8 < core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_protein_loop_sampler 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_protein_loop_sampler/log and /home/benchmark/working_dir/main:62148/swa_protein_loop_sampler/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_loop_sampler/log /home/benchmark/working_dir/main:62148/swa_protein_loop_sampler/log 8c8 < core.import_pose.import_pose: File '2it7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2it7.pdb' automatically determined to be of type PDB from contents. 13c13 < core.import_pose.import_pose: File 'noloop5-8_2it7_stripsidechain.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noloop5-8_2it7_stripsidechain.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_protein_prepack 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_protein_prepack/log and /home/benchmark/working_dir/main:62148/swa_protein_prepack/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_prepack/log /home/benchmark/working_dir/main:62148/swa_protein_prepack/log 8,9c8,9 < core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'noloop_1oyc_min.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'noloop_1oyc_min.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_erraser 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_erraser/log and /home/benchmark/working_dir/main:62148/swa_rna_erraser/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_erraser/log /home/benchmark/working_dir/main:62148/swa_rna_erraser/log 15c15 < core.import_pose.import_pose: File 'native_struct.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'native_struct.pdb' automatically determined to be of type PDB from contents. 18c18 < core.import_pose.import_pose: File 'missing_rebuild_res_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'missing_rebuild_res_native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_01_append 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_01_append/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_01_append/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_01_append/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_01_append/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_02_prepend 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_02_prepend/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_02_prepend/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_02_prepend/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_02_prepend/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_03_append_to_silent 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_03_append_to_silent/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_03_append_to_silent/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_03_append_to_silent/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_03_append_to_silent/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_05_prepend_to_5primeterminus 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_05_prepend_to_5primeterminus/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_05_prepend_to_5primeterminus/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_05_prepend_to_5primeterminus/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_05_prepend_to_5primeterminus/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_06_append_to_3primeterminus 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_06_append_to_3primeterminus/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_06_append_to_3primeterminus/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_06_append_to_3primeterminus/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_06_append_to_3primeterminus/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_07_prepend_dinucleotide 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_07_prepend_dinucleotide/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_07_prepend_dinucleotide/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_07_prepend_dinucleotide/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_07_prepend_dinucleotide/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_08_append_dinucleotide 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_08_append_dinucleotide/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_08_append_dinucleotide/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_08_append_dinucleotide/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_08_append_dinucleotide/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_09_sample_virtual_ribose 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_09_sample_virtual_ribose/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_09_sample_virtual_ribose/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_09_sample_virtual_ribose/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_09_sample_virtual_ribose/log 28c28 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_10_prepend_and_ccd_close 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_10_prepend_and_ccd_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_10_prepend_and_ccd_close/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_10_prepend_and_ccd_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_10_prepend_and_ccd_close/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_11_append_and_ccd_close 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_11_append_and_ccd_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_11_append_and_ccd_close/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_11_append_and_ccd_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_11_append_and_ccd_close/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_12_helix_addition 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_12_helix_addition/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_12_helix_addition/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_12_helix_addition/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_12_helix_addition/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 27c27 < core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_13_chunk_combination_and_closure 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_13_chunk_combination_and_closure/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_13_chunk_combination_and_closure/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_13_chunk_combination_and_closure/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_13_chunk_combination_and_closure/log 22c22 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_15_combine_long_loop_sampling 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_15_combine_long_loop_sampling/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_15_combine_long_loop_sampling/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_15_combine_long_loop_sampling/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_15_combine_long_loop_sampling/log 22c22 < core.import_pose.import_pose: File 'native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'native.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_17_append_floating_base 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_17_append_floating_base/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_17_append_floating_base/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_17_append_floating_base/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_17_append_floating_base/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_18_rebuild_bulge 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_18_rebuild_bulge/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_18_rebuild_bulge/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_18_rebuild_bulge/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_18_rebuild_bulge/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_19_prepend_floating_base_by_jump 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_19_prepend_floating_base_by_jump/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_19_prepend_floating_base_by_jump/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_19_prepend_floating_base_by_jump/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_19_prepend_floating_base_by_jump/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_20_append_floating_base_by_jump 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_20_append_floating_base_by_jump/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_20_append_floating_base_by_jump/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_20_append_floating_base_by_jump/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_20_append_floating_base_by_jump/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_22_prepend_and_kic_close 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_22_prepend_and_kic_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_22_prepend_and_kic_close/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_22_prepend_and_kic_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_22_prepend_and_kic_close/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_gagu_23_append_and_kic_close 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_gagu_23_append_and_kic_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_23_append_and_kic_close/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_23_append_and_kic_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_23_append_and_kic_close/log 15c15 < core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swa_rna_loop_sampler 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swa_rna_loop_sampler/log and /home/benchmark/working_dir/main:62148/swa_rna_loop_sampler/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_loop_sampler/log /home/benchmark/working_dir/main:62148/swa_rna_loop_sampler/log 15c15 < core.import_pose.import_pose: File 'small_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'small_native.pdb' automatically determined to be of type PDB from contents. 21c21 < core.import_pose.import_pose: File 'small_template.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'small_template.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_add_rosettascripts 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_add_rosettascripts/log and /home/benchmark/working_dir/main:62148/swm_add_rosettascripts/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_add_rosettascripts/log /home/benchmark/working_dir/main:62148/swm_add_rosettascripts/log 11c11 < core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents. 21c21 < core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_beta_peptide_loop 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_beta_peptide_loop/log and /home/benchmark/working_dir/main:62148/swm_beta_peptide_loop/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_beta_peptide_loop/log /home/benchmark/working_dir/main:62148/swm_beta_peptide_loop/log 54c54 < core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 62c62 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 71c71 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 73c73 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_build_full_model 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_build_full_model/log and /home/benchmark/working_dir/main:62148/swm_build_full_model/log differ Files /home/benchmark/working_dir/main:62147/swm_build_full_model/log_legacy and /home/benchmark/working_dir/main:62148/swm_build_full_model/log_legacy differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_build_full_model/log /home/benchmark/working_dir/main:62148/swm_build_full_model/log 15c15 < core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_build_full_model/log_legacy /home/benchmark/working_dir/main:62148/swm_build_full_model/log_legacy 15c15 < core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_dna_bridge 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_dna_bridge/log and /home/benchmark/working_dir/main:62148/swm_dna_bridge/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_dna_bridge/log /home/benchmark/working_dir/main:62148/swm_dna_bridge/log 22c22 < core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 62c62 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 67c67 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 71c71 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_dna_loop 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_dna_loop/log and /home/benchmark/working_dir/main:62148/swm_dna_loop/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_dna_loop/log /home/benchmark/working_dir/main:62148/swm_dna_loop/log 22c22 < core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_general_polymer_sampler 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_general_polymer_sampler/log and /home/benchmark/working_dir/main:62148/swm_general_polymer_sampler/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_general_polymer_sampler/log /home/benchmark/working_dir/main:62148/swm_general_polymer_sampler/log 31c31 < core.import_pose.import_pose: File '6ofx_errasermin_CCA_start3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '6ofx_errasermin_CCA_start3.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 61c61 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 63c63 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_l_rna 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_l_rna/log and /home/benchmark/working_dir/main:62148/swm_l_rna/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_l_rna/log /home/benchmark/working_dir/main:62148/swm_l_rna/log 23c23 < core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_protein_CCDmove 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_protein_CCDmove/log and /home/benchmark/working_dir/main:62148/swm_protein_CCDmove/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_CCDmove/log /home/benchmark/working_dir/main:62148/swm_protein_CCDmove/log 35c35 < core.import_pose.import_pose: File 'shortloop_mini_1alc_H.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'shortloop_mini_1alc_H.pdb' automatically determined to be of type PDB from contents. 38c38 < core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_protein_from_scratch 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_protein_from_scratch/log and /home/benchmark/working_dir/main:62148/swm_protein_from_scratch/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_from_scratch/log /home/benchmark/working_dir/main:62148/swm_protein_from_scratch/log 35c35 < core.import_pose.import_pose: File '2jof.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2jof.pdb' automatically determined to be of type PDB from contents. 38c38 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 40c40 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 42c42 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 44c44 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_protein_loop_sampler 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_protein_loop_sampler/log and /home/benchmark/working_dir/main:62148/swm_protein_loop_sampler/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_loop_sampler/log /home/benchmark/working_dir/main:62148/swm_protein_loop_sampler/log 54c54 < core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 62c62 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 71c71 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 73c73 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_protein_move_inside_coiledcoil_by_bond 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_protein_move_inside_coiledcoil_by_bond/log and /home/benchmark/working_dir/main:62148/swm_protein_move_inside_coiledcoil_by_bond/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_move_inside_coiledcoil_by_bond/log /home/benchmark/working_dir/main:62148/swm_protein_move_inside_coiledcoil_by_bond/log 34c34 < core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB from contents. 37c37 < core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 55c55 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 57c57 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 66c66 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 68c68 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_protein_move_inside_helix_by_bond 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_protein_move_inside_helix_by_bond/log and /home/benchmark/working_dir/main:62148/swm_protein_move_inside_helix_by_bond/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_move_inside_helix_by_bond/log /home/benchmark/working_dir/main:62148/swm_protein_move_inside_helix_by_bond/log 34c34 < core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB from contents. 36c36 < core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_protein_preminimize 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_protein_preminimize/log and /home/benchmark/working_dir/main:62148/swm_protein_preminimize/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_preminimize/log /home/benchmark/working_dir/main:62148/swm_protein_preminimize/log 36c36 < core.import_pose.import_pose: File 'noloop_mini_1alc_H.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noloop_mini_1alc_H.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_base_pair_constraints 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/log and /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/log differ Files /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/nocst_log and /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/nocst_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/log /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/log 22c22 < core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB from contents. 62c62 < core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents. 68c68 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 70c70 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 72c72 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 74c74 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 77c77 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 79c79 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 81c81 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/nocst_log /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/nocst_log 22c22 < core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB from contents. 44c44 < core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 59c59 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 61c61 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 63c63 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_checkpoint_partition 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_checkpoint_partition/log and /home/benchmark/working_dir/main:62148/swm_rna_checkpoint_partition/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_checkpoint_partition/log /home/benchmark/working_dir/main:62148/swm_rna_checkpoint_partition/log 24c24 < core.import_pose.import_pose: File 'start_5n.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'start_5n.pdb' automatically determined to be of type PDB from contents. 31c31 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 33c33 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 35c35 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 37c37 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_fourwayjunction 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_fourwayjunction/log and /home/benchmark/working_dir/main:62148/swm_rna_fourwayjunction/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_fourwayjunction/log /home/benchmark/working_dir/main:62148/swm_rna_fourwayjunction/log 23,26c23,26 < core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents. 38c38 < core.import_pose.import_pose: File 'fourway_reference.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'fourway_reference.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 55c55 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_loop_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_loop_design/log and /home/benchmark/working_dir/main:62148/swm_rna_loop_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_loop_design/log /home/benchmark/working_dir/main:62148/swm_rna_loop_design/log 24c24 < core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'j44a_2R8SR.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'j44a_2R8SR.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 55c55 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_move_align_dock 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_move_align_dock/log and /home/benchmark/working_dir/main:62148/swm_rna_move_align_dock/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_align_dock/log /home/benchmark/working_dir/main:62148/swm_rna_move_align_dock/log 22c22 < core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAQ.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAQ.pdb' automatically determined to be of type PDB from contents. 26c26 < core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAP.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAP.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'ALIGN_2bp_gaaa_minor_free_2oiu_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ALIGN_2bp_gaaa_minor_free_2oiu_RNA.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_move_inside_helix_by_bond 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_bond/log and /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_bond/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_bond/log /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_bond/log 24,26c24,26 < core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB from contents. 28c28 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 30c30 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 32c32 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 34c34 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_move_inside_helix_by_jump 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_jump/log and /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_jump/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_jump/log /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_jump/log 24,26c24,26 < core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB from contents. 28c28 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 30c30 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 32c32 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 34c34 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_move_two_strands 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_move_two_strands/log and /home/benchmark/working_dir/main:62148/swm_rna_move_two_strands/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_two_strands/log /home/benchmark/working_dir/main:62148/swm_rna_move_two_strands/log 24,26c24,26 < core.import_pose.import_pose: File 'strandA_full_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'strandB_full_helix.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'strandA_full_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'strandB_full_helix.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB from contents. 28c28 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 30c30 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 32c32 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 34c34 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_nickedhelix 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_nickedhelix/log and /home/benchmark/working_dir/main:62148/swm_rna_nickedhelix/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_nickedhelix/log /home/benchmark/working_dir/main:62148/swm_rna_nickedhelix/log 23,24c23,24 < core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents. 36c36 < core.import_pose.import_pose: File 'twoparthelix_reference.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'twoparthelix_reference.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_protonated_adenosine 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_protonated_adenosine/log and /home/benchmark/working_dir/main:62148/swm_rna_protonated_adenosine/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_protonated_adenosine/log /home/benchmark/working_dir/main:62148/swm_rna_protonated_adenosine/log 23c23 < core.import_pose.import_pose: File 'noloop_4jrd_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noloop_4jrd_RNA.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File '4jrd_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '4jrd_RNA.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 45c45 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 47c47 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 51c51 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 53c53 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_singleloop 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_singleloop/log and /home/benchmark/working_dir/main:62148/swm_rna_singleloop/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_singleloop/log /home/benchmark/working_dir/main:62148/swm_rna_singleloop/log 23c23 < core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 56c56 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 58c58 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 60c60 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.swm_rna_srl_triplet 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/swm_rna_srl_triplet/log and /home/benchmark/working_dir/main:62148/swm_rna_srl_triplet/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_srl_triplet/log /home/benchmark/working_dir/main:62148/swm_rna_srl_triplet/log 19c19 < core.import_pose.import_pose: File 'srl_free_bulgedG_HELIX2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'srl_free_bulgedG_HELIX2.pdb' automatically determined to be of type PDB from contents. 32c32 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 37c37 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 41c41 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 46c46 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 50c50 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. 335c335 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 338c338 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 340c340 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 342c342 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 344c344 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 346c346 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 348c348 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 350c350 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. 630c630 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 633c633 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 635c635 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 637c637 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 639c639 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 641c641 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 643c643 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 645c645 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. 926c926 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 929c929 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 931c931 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 933c933 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 935c935 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 937c937 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 939c939 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 941c941 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. 1221c1221 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 1224c1224 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 1226c1226 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 1228c1228 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 1230c1230 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 1232c1232 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 1234c1234 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 1236c1236 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. 1522c1522 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 1525c1525 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 1527c1527 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 1529c1529 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 1531c1531 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 1533c1533 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 1535c1535 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 1537c1537 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. 1822c1822 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 1825c1825 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 1827c1827 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 1829c1829 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 1831c1831 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 1833c1833 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 1835c1835 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 1837c1837 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents. 2116c2116 < core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents. 2119c2119 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents. 2121c2121 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents. 2123c2123 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents. 2125c2125 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents. 2127c2127 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents. 2129c2129 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents. 2131c2131 < core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.symm_rotamer_boltzmann 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/symm_rotamer_boltzmann/log and /home/benchmark/working_dir/main:62148/symm_rotamer_boltzmann/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symm_rotamer_boltzmann/log /home/benchmark/working_dir/main:62148/symm_rotamer_boltzmann/log 14c14 < core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.symmetric_docking 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/symmetric_docking/log and /home/benchmark/working_dir/main:62148/symmetric_docking/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetric_docking/log /home/benchmark/working_dir/main:62148/symmetric_docking/log 37c37 < core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB from contents. 43c43 < core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.symmetry_multicomponent 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log1 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log1 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log2 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log2 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log3 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log3 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log4 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log4 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log5 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log5 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log6 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log6 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log7 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log7 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log8 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log8 differ Files /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log9 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log9 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log1 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log1 8c8 < core.import_pose.import_pose: File 'input/test1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test1.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log2 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log2 8c8 < core.import_pose.import_pose: File 'input/test1_ij1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test1_ij1.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log3 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log3 8c8 < core.import_pose.import_pose: File 'input/test1_ij2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test1_ij2.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log4 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log4 8c8 < core.import_pose.import_pose: File 'input/test1_ij8.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test1_ij8.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log5 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log5 8c8 < core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log6 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log6 8c8 < core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log7 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log7 8c8 < core.import_pose.import_pose: File 'input/test2_ij1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test2_ij1.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log8 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log8 8c8 < core.import_pose.import_pose: File 'input/test3.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test3.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log9 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log9 8c8 < core.import_pose.import_pose: File 'input/test7.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test7.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.target_clash 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/target_clash/log and /home/benchmark/working_dir/main:62148/target_clash/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/target_clash/log /home/benchmark/working_dir/main:62148/target_clash/log 14c14 < core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents. 70c70 < core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.tcrmodel 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/tcrmodel/log and /home/benchmark/working_dir/main:62148/tcrmodel/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/tcrmodel/log /home/benchmark/working_dir/main:62148/tcrmodel/log 33c33 < core.import_pose.import_pose: File 'input/ora_tmplt_piece.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/ora_tmplt_piece.pdb' automatically determined to be of type PDB from contents. 35c35 < core.import_pose.import_pose: File 'input/orb_tmplt_piece.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/orb_tmplt_piece.pdb' automatically determined to be of type PDB from contents. 37c37 < core.import_pose.import_pose: File 'input/gma_tmplt_piece.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/gma_tmplt_piece.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File 'input/cdr3a_tmplt_piece.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/cdr3a_tmplt_piece.pdb' automatically determined to be of type PDB from contents. 41,42c41,42 < core.import_pose.import_pose: File 'input/gmb_tmplt_piece.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/cdr3b_tmplt_piece.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/gmb_tmplt_piece.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/cdr3b_tmplt_piece.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.template_features 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/template_features/log and /home/benchmark/working_dir/main:62148/template_features/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/template_features/log /home/benchmark/working_dir/main:62148/template_features/log 8,9c8,9 < core.import_pose.import_pose: File 'input/1VYHA.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File 'input/1FXWF.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1VYHA.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File 'input/1FXWF.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.test1_benchmark 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/test1_benchmark/log and /home/benchmark/working_dir/main:62148/test1_benchmark/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test1_benchmark/log /home/benchmark/working_dir/main:62148/test1_benchmark/log 9c9 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 22c22 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 40c40 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 49c49 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 55c55 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 62c62 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 66c66 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 69c69 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 71c71 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 7178c7178 < core.import_pose.import_pose: File 'input/test_in_w_termini.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in_w_termini.pdb' automatically determined to be of type PDB from contents. 7180c7180 < core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents. 7188c7188 < core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents. 7227c7227 < core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents. 7248c7248 < core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents. 7273c7273 < core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.test_computed_saxs_spectrum 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS and /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS differ Files /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS_fa and /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS_fa differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS 43c43 < core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS_fa /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS_fa 62c62 < core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.test_d_l_readin 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/test_d_l_readin/log and /home/benchmark/working_dir/main:62148/test_d_l_readin/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test_d_l_readin/log /home/benchmark/working_dir/main:62148/test_d_l_readin/log 8c8 < core.import_pose.import_pose: File 'inputs/a98.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/a98.pdb' automatically determined to be of type PDB from contents. 13c13 < core.import_pose.import_pose: File 'inputs/d98.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/d98.pdb' automatically determined to be of type PDB from contents. 17c17 < core.import_pose.import_pose: File 'inputs/nlu.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/nlu.pdb' automatically determined to be of type PDB from contents. 20c20 < core.import_pose.import_pose: File 'inputs/dnlu.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/dnlu.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.thermal_sampler 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/thermal_sampler/log and /home/benchmark/working_dir/main:62148/thermal_sampler/log differ Files /home/benchmark/working_dir/main:62147/thermal_sampler/log2 and /home/benchmark/working_dir/main:62148/thermal_sampler/log2 differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/thermal_sampler/log /home/benchmark/working_dir/main:62148/thermal_sampler/log 13c13 < core.import_pose.import_pose: File 'uucg_native.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'uucg_native.pdb' automatically determined to be of type PDB from contents. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/thermal_sampler/log2 /home/benchmark/working_dir/main:62148/thermal_sampler/log2 13c13 < core.import_pose.import_pose: File 'gaaa_nonnative.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'gaaa_nonnative.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.threefoldlinkermover_tbmb 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb/log and /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb/log /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb/log 37c37 < core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.threefoldlinkermover_tbmb_symmetric 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb_symmetric/log and /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb_symmetric/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb_symmetric/log /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb_symmetric/log 37c37 < core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.tna_base_pairs 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/tna_base_pairs/log and /home/benchmark/working_dir/main:62148/tna_base_pairs/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/tna_base_pairs/log /home/benchmark/working_dir/main:62148/tna_base_pairs/log 14c14 < core.import_pose.import_pose: File 'long.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'long.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.torsion_restricted_sampling 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/torsion_restricted_sampling/log and /home/benchmark/working_dir/main:62148/torsion_restricted_sampling/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/torsion_restricted_sampling/log /home/benchmark/working_dir/main:62148/torsion_restricted_sampling/log 43c43 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 52c52 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 54c54 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 64c64 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents. 66c66 < core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.vip 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/vip/log and /home/benchmark/working_dir/main:62148/vip/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/vip/log /home/benchmark/working_dir/main:62148/vip/log 8c8 < core.import_pose.import_pose: File 'Start_Lambda_Model.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'Start_Lambda_Model.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.write_mol_file 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/write_mol_file/log and /home/benchmark/working_dir/main:62148/write_mol_file/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/write_mol_file/log /home/benchmark/working_dir/main:62148/write_mol_file/log 14c14 < core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB --- > core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.zinc_heterodimer 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/zinc_heterodimer/log and /home/benchmark/working_dir/main:62148/zinc_heterodimer/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/zinc_heterodimer/log /home/benchmark/working_dir/main:62148/zinc_heterodimer/log 29c29 < core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161.pdb' automatically determined to be of type PDB from contents. 33,34c33,34 < core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB < core.import_pose.import_pose: File '2D4X.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents. > core.import_pose.import_pose: File '2D4X.pdb' automatically determined to be of type PDB from contents. 48c48 < core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB from contents. 73c73 < core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.zinc_homodimer_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/zinc_homodimer_design/log and /home/benchmark/working_dir/main:62148/zinc_homodimer_design/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/zinc_homodimer_design/log /home/benchmark/working_dir/main:62148/zinc_homodimer_design/log 35c35 < core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.1YZM_1_H35H39_1_ZNX_360_INPUT.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.1YZM_1_H35H39_1_ZNX_360_INPUT.pdb' automatically determined to be of type PDB from contents.

mac.clang.python39.integration.zinc_homodimer_setup 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62147/zinc_homodimer_setup/log and /home/benchmark/working_dir/main:62148/zinc_homodimer_setup/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/zinc_homodimer_setup/log /home/benchmark/working_dir/main:62148/zinc_homodimer_setup/log 12c12 < core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.pdb' automatically determined to be of type PDB from contents. 15c15 < core.import_pose.import_pose: File '1YZM_1_H35H39_1_ZNX.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1YZM_1_H35H39_1_ZNX.pdb' automatically determined to be of type PDB from contents. 39c39 < core.import_pose.import_pose: File '1YZM_WT.pdb' automatically determined to be of type PDB --- > core.import_pose.import_pose: File '1YZM_WT.pdb' automatically determined to be of type PDB from contents.

All sub-tests

AddConstraintsToCurrentConformationMover AlignPDBInfoToSequences AlterSpecDisruption AnchorFinder AnchoredDesign AnchoredPDBCreator BFactorSelector BuildPeptide CCD_loop_closure CCS_PARCS ConsensusLoopDesign ContactMolecularSurface DARC_electrostatics DARC_make_ray_files DARC_sampling_on_the_fly DARC_shapeonly DNA_methylation DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FavorSequenceProfileMover FilterReportAsPoseExtraScoresMover FlipChirality FloppyTail HDXEnergy HOW_TO_MAKE_TESTS HelixBendFilter InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_metrics InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LayerDesign LayerDesign_symm LayerSelector LoopAnalyzer LoopLengthChange ModifyVariantTypeMover MutateResidue_selector N-terminal_acetylation OversaturatedHbondAcceptorFilter PDB_diagnostic PTMPrediction PeptideCyclizeMover PeptideStubMover_prependRepeat PolarDesign2019 ProQ RBOut ReadResfile_with_selector RescorePDDF RescoreSAXS ResidueDisorder RunSimpleMetric_b_factor_test SID_ERMS_prediction SID_rescore SSElementSelector SecondaryStructureFilter SnugDock StrandCurvatureByLevels StrandHelixGeometryFilter ThreadingInputter TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm UnsatSelector Werror_check abinitio abinitio_with_trRosetta add_constraints_to_current_conformation add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data ambiguous_nmr_distance_constraint angle_recovery_stats antibody_H3 antibody_H3_camelid antibody_cc antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter app_exception_handling assemble_domains_jd2 auto-drrafter_final_results auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autoNOE_rosetta autosetup_metals_centroid backbonegridsampler backbonegridsampler_multiresidue backbonegridsampler_nstruct_mode backrub backrub_interface_ddG backrub_pilot balancedKIC basic_gcn_tensorflow_test batch_relax bcl_fragment_mutate beta_strand_homodimer bin_initialization bin_perturbation binselector binselector_probins blob_finder bridge_chains broker broker_membrane bundlegridsampler bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_multirepeat bundlegridsampler_z0_offset bundlegridsampler_z1_offset bundlereporter_filter burial_measure_centroid buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm c-term_conjugation calculate_sasa carbohydrates cart_min_glycans cartesianddg case_sensitive_filenames ccd_ends_graft_mover_rs central_class_modification centroid_disulfide_scores centroid_from_fullatom cl_complex_rescore classic_relax_1a19 cleanAlignment cluster cluster_alns cluster_calibur cluster_filter cmaes_minimizer coarse_rna_scoring code_template_tests_app code_template_tests_citations code_template_tests_src code_template_tests_unit coenzymes combine_silent composition_energy_layers constel constraints_metric contactMap continuous_sewing_hasher control_flow_rs copy_rotamer_mover count_cycpep_sequences coupled_moves crankshaft_flip create_clash-based_repack_shell create_sequence_motif crossaln crosslinkermover_1_4_bbmb_asymm crosslinkermover_1_4_bbmb_c2_symmetry crosslinkermover_1_4_bbmb_s2_symm crosslinkermover_lanthionine crosslinkermover_methyllanthionine crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp 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hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbondstoresidue_selector hbs_design header_using_check helical_bundle helical_bundle_nonideal helical_bundle_predict helical_bundle_predict_psipred helical_bundle_predict_psipred_with_helix_globals helical_bundle_predict_sequence helical_bundle_predict_skipping_residues helix_from_sequence hierarchical_clustering homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hshash_utils hts_io hybridization hydrate hydrate_relax identify_cdr_clusters ig_dump include_cc_check interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design inverse_rotamer_remodel iphold jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jrelax jscore kinemage_grid_output kinematic_looprelax ld_converter ligand_database_io ligand_dock_7cpa ligand_dock_cholesterol ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_motif_discovery ligand_motif_identification ligand_water_docking longest_continuous_polar_segment_filter loop_creation loop_grower_N_term_symm loop_hash loop_modeling make_and_perturb_bundle_multirepeat make_exemplar make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_rot_lib make_symmdef_file match_1c2t match_1n9l match_6cpa match_xml measure_lcaa_radii membrane_abinitio membrane_relax membrane_relax_hbond metal_setup metalloprotein_abrelax metalloprotein_broker metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mg_modeler mg_modeler_lores mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_6Dloopclose minimize_with_elec_dens mirror_symm mixed_monte_carlo mm_params mmtfIO_score_test molfile_to_params molfile_to_params_polymer motif_dna_packer_design motif_extraction motif_score_filter mp_dock mp_dock_ensemble mp_dock_prepack mp_dock_setup mp_domain_assembly mp_domain_assembly_FtsQ mp_f19_relax mp_find_interface mp_interface_statistics mp_ligand_interface mp_loadtime mp_mutate_relax mp_mutate_repack mp_quick_relax mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_relax_w_ligand mp_score_jd2 mp_span_ang_ref2015_memb mp_span_from_pdb mp_symdock mp_symmetry_load mp_transform mp_transform_optimize mp_vis_emb mpi_multistate_design mpi_simple_cycpep_predict mpi_simple_cycpep_predict_4level mpi_simple_cycpep_predict_computing_pnear_to_all mpil_find_pore_ahelical mpil_find_pore_bbarrel mpil_load_implicit_lipids mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering multithreaded_fastdesign multithreaded_fixbb multithreaded_interaction_graph_accuracy multithreaded_interaction_graph_accuracy_symm multithreaded_packrotamersmover mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC noe_assignment non-canonical_connectivities nonideal_rtmin nucleobase_sample_around number_of_residuetypes oligourea_design oligourea_predict oop_create oop_design oop_dock_design orbitals output_schema pH_mode pepspec pepspec_anchor_dock peptiderive per_residue_energies per_residue_sc_sasa per_residue_solvent_exposure pertmin perturb_helical_bundle perturb_helical_bundle_copying_pitch perturb_helical_bundle_epsilon perturb_helical_bundle_setting perturb_helical_bundle_z_offset phiselector phosphonate phosphorylation place_simultaneously pmut_scan pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial pose_sewing posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk proteinMPNN_model_perplexity protocol_metric pwsho pymol_cif r_pdb2top r_rmsf ralford_dump_rotamers rama_mutation_selector range_relax_w_cst rb_recces rdkit_metrics read_polymeric_components readin_dna_rna_protein real_virt_mover recces_turner recon_design recon_design_mpi referencepose_mutateresidue relax_w_allatom_cst remodel remodel_disulfides remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens repeat_propagate repeat_propagate_v2 repeat_propagate_v3 repeat_relax replica_docking report_hbonds_for_plugin res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator restype_converter rings rna_add_WC_stats rna_assemble rna_cluster rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_lariat rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_helix rna_minimize rna_minimize_6D_loop_close rna_motif rna_predict_chem_map rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rna_suitename rnp_ddg_calc_mut rnp_ddg_calc_setup rnp_ddg_calc_wt rnp_ddg_finalize rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rnp_ddg_relax_finalize rnp_ddg_relax_setup rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_info rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sample_seq_from_probs sasa_metric_options score12_docking score_aln score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI select_best_unique_ligand_poses selected_residue_count_metric sequence_profile_constraints sequence_recovery sequence_tolerance set_torsion shobuns silent2frag sim_cryo simple_cycpep_predict simple_cycpep_predict_1_4_bbmb simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_beta_thioether_lariat simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_lanthionine simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_terminal_disulfide_tails_2 simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_thioether_cis_sampling simple_cycpep_predict_thioether_lariat simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_dna_test simple_glycosylation simple_glycosylation_alternate_AAs simple_grafting_movers simple_hbondstoatom simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_b_factor simple_metrics_in_protocols simple_metrics_per_residue site_constraint small_molecule_lattice_dock smallmover_resselector smart_annealer splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stepwise_lores stored_residue_subset struc_set_fragment_picker super_aln supercharge surface_docking swa_protein_CCDclose swa_protein_build_at_Cterminus swa_protein_build_at_Nterminus swa_protein_cluster swa_protein_combine_loops swa_protein_loop_sampler swa_protein_prepack swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_04_clustering swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_14_combine_long_loop_filtering swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_clusterer swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_beta_peptide_loop swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_CCDmove swm_protein_from_scratch swm_protein_loop_sampler swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_protein_preminimize swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_cycpep_align_and_symmetrize symmetric_docking symmetrical_residue_selector symmetry_data_resource symmetry_multicomponent target_clash task_selector tcrmodel template_features tensorflow_connection_test tensorflow_manager tensorflow_simple_model_load_and_evaluate test1_benchmark test_computed_saxs_spectrum test_d_l_readin test_degreaser test_energy_method_options test_idealize test_rosetta_thread_manager_advanced_API test_rosetta_thread_manager_basic_API thermal_sampler thread_local_tracers_check threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling trRosetta trRosettaConstraintGenerator trRosettaConstraintGenerator_rosettascripts trRosettaProtocolMover trRosettaProtocolMover_rosettascripts trRosettaProtocolMover_rosettascripts_diskwrite trRosettaProtocolMover_rosettascripts_diskwrite_only trRosetta_test_predict trRosetta_test_predict_ubiquitin trRosetta_test_predict_ubiquitin_cst_file_write trRosetta_test_predict_ubiquitin_cst_file_write_only trRosetta_test_predict_ubiquitin_init_by_bins unfolded_state_energy_calc validate_database vancomycin vip voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup

JSON output

{ "compared_with_test": { "full_name": "mac.clang.python39.integration", "name": "integration", "platform": { "compiler": "clang", "extras": [], "os": "mac", "python": "3.9" }, "platform_as_string": "mac.clang.python39", "revision": { "branch": "main", "revision_id": 62147 }, "state": "failed", "test_id": 850207 }, "summary": { "failed": 515, "failed_tests": [ "rna_design", "mf_fixbb_des", "score_jd2", "broker_membrane", "pepspec", "simple_metrics_per_residue", "interface_energy", "simple_metrics", "glycan_clash_check", "symm_rotamer_boltzmann", "symmetric_docking", "loop_modeling", "ppk", "abinitio", "docking_full_protocol", "glycan_tree_relax", "ga_ligand_dock_macrocycle", "ligand_motif_identification", "hbonds_sp2", "fiber_diffraction", "swm_rna_move_inside_helix_by_jump", "match_6cpa", "create_sequence_motif", "cs_rosetta_rna", "simple_cycpep_predict_square_planar_metal", "swa_rna_gagu_03_append_to_silent", "InterfaceAnalyzer_prepack", "make_exemplar", "swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide", "auto-drrafter_setup_run_R1", "site_constraint", "cmaes_minimizer", "dock_with_hotspot_place_simultaneously", "control_flow_rs", "design_w_custom_palette-NCAAs", "splice_out_L1_L2_same", "rna_denovo_RNP_refine_native", "interaction_graph_summary_metric", "hbnet_use_input_rot", "centroid_from_fullatom", "swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump", "sim_cryo", "drrafter_run", "batch_relax", "tcrmodel", "jrelax", "RunSimpleMetric_b_factor_test", "KIC_with_fragments", "hydrate", "Enzrevert_xml", "oop_dock_design", "swm_rna_fourwayjunction", "ppi_v3_suiteF", "mp_domain_assembly", "splice_out_H3_same", "splice_out_H3_longer", "ppi_v3_suiteB", "identify_cdr_clusters", "simple_cycpep_predict", "pwsho", "mp_domain_assembly_FtsQ", "cartesianddg", "supercharge", "mr_protocols", "swa_rna_gagu_09_sample_virtual_ribose", "recon_design", "swa_rna_gagu_10_prepend_and_ccd_close", "simple_cycpep_predict_octahedral_metal", "score12_docking", "AddConstraintsToCurrentConformationMover", "add_helix_sequence_constraints", "classic_relax_1a19", "metalloprotein_abrelax", "farfar_mrna", "jd2test_mmCIFIO", "rna_denovo_new_libs", "drrafter_error_estimation", "DumpTrajectoryEnergy", "RBOut", "beta_strand_homodimer", "simple_metric_filter", "simple_cycpep_predict_tbmb", "remodel_helical_repeat", "mp_vis_emb", "enzscore_filter_ligand", "PDB_diagnostic", "swm_rna_move_two_strands", "zinc_homodimer_setup", "iphold", "ligand_dock_7cpa", "AnchorFinder", "swa_protein_loop_sampler", "write_mol_file", "ligand_water_docking", "simple_grafting_movers", "ligand_dock_grid", "min_pack_min", "centroid_disulfide_scores", "swm_protein_loop_sampler", "docking_ensemble", "BFactorSelector", "pepspec_anchor_dock", "fast_relax", "AnchoredDesign", "swm_rna_protonated_adenosine", "match_xml", "oop_design", "small_molecule_lattice_dock", "readin_dna_rna_protein", "swa_rna_gagu_19_prepend_floating_base_by_jump", "next_generation_KIC", "score_only_silence", "rna_screen_phosphates", "swm_dna_loop", "density_tools", "energy_based_clustering_alpha_aa_scorefile", "jd2test_PDBIO", "mp_f19_relax", "hydrate_relax", "simple_cycpep_predict_1_4_bbmb", "LoopLengthChange", "kinematic_looprelax", "hshash_utils", "pose_sewing", "jd2test_mmCIFin_PDBout", "shobuns", "helical_bundle_predict_psipred_with_helix_globals", "density_refine_symm", "posttranslationalmod_io", "flexpepdock", "custom_basetype_packer_palette", "LoopAnalyzer", "mf_flexbb_sc", "simple_cycpep_predict_cartesian", "sample_seq_from_probs", "add_job_pair_data", "swa_rna_gagu_13_chunk_combination_and_closure", "glycan_refinment", "splice_out_H1_H2_longer", "enumerative_sampling", "swm_protein_from_scratch", "hybridization", "splice_out_L3_longer", "grid_scores_features", "cycpep_symmetry_filter", "docking_prepack", "fix_alignment_to_match_pdb", "InterfaceDdG", "KIC_refine", "geometric_solvation", "swm_rna_base_pair_constraints", "test1_benchmark", "jd2test_PDBin_mmCIFout_extra_data_separate", "rna_denovo_new_FT_RNP_2prot_dens", "mp_find_interface", "rna_denovo_new_FT_5P_j12_leadzyme", "peptiderive", "ligand_motif_design", "rnp_ddg_relax_command_2", "rollmover", "motif_extraction", "design_glycans", "UBQ_E2_thioester_extra_bodies", "ligand_dock_cholesterol", "symmetry_multicomponent", "enzscore_filter_metal_sym", "membrane_relax_hbond", "antibody_H3", "report_hbonds_for_plugin", "constraints_metric", "helical_bundle_predict", "fold_and_dock", "ig_dump", "sequence_tolerance", "InterfaceAnalyzer_metrics", "flexpepdock_abinitio", "evolution", "antibody_graft", "relax_w_allatom_cst", "DumpTrajectoryEnergy_packing", "angle_recovery_stats", "simple_cycpep_predict_nterm_isopeptide_lariat_tailless", "HDXEnergy", "cyclization", "features_pdb", "simple_cycpep_predict_symm_gly", "torsion_restricted_sampling", "InterfaceAnalyzer", "ncbb_packer_palette", "ld_converter", "test_d_l_readin", "swa_rna_gagu_11_append_and_ccd_close", "enzscore_filter_metal", "mp_transform_optimize", "backrub_interface_ddG", "InterfaceAnalyzer_tracer", "DARC_shapeonly", "mp_mutate_relax", "helical_bundle_predict_sequence", "RescorePDDF", "range_relax_w_cst", "mhc_epitope_nmer_preload", "mpil_load_implicit_lipids", "mf_fixbb_sc", "res_lipo_ref2015_memb", "sdf_reader", "test_computed_saxs_spectrum", "fold_cst_new", "swa_protein_prepack", "struc_set_fragment_picker", "mg_modeler", "homodimer_fnd_ref2015_memb", "cluster_alns", "minimize_with_elec_dens", "stepwise_lores", "swa_protein_build_at_Cterminus", "ligand_database_io", "UBQ_Gp_CYD-CYD", "calculate_sasa", "threefoldlinkermover_tbmb_symmetric", "rna_denovo_dna_bridge", "simple_cycpep_predict_tetrahedral_metal", "density_refine", "swa_rna_gagu_15_combine_long_loop_sampling", "DARC_sampling_on_the_fly", "docking_site_constraints", "simple_metric_cache", "zinc_heterodimer", "assemble_domains_jd2", "KIC_vicinity", "DARC_make_ray_files", "rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation", "enzscore_filter_dimetal_sym", "enzscore_filter_dimetal", "binselector", "per_residue_sc_sasa", "auto-drrafter_setup_run_R3", "pH_mode", "place_simultaneously", "phosphonate", "DARC_electrostatics", "UBQ_Gp_LYX-Cterm", "crosslinkermover_tetrahedral_metal", "rna_denovo_fragment_homology_exclusion", "make_symmdef_file", "mp_span_ang_ref2015_memb", "coupled_moves", "tna_base_pairs", "contactMap", "swa_rna_gagu_01_append", "swa_rna_loop_sampler", "simple_cycpep_predict_anglelength", "doug_dock_design_min_mod2_cal_cal", "remodel_disulfides", "swm_protein_CCDmove", "cstfile_to_theozyme_pdb", "mp_span_from_pdb", "cycpep_rigid_body_permutation_mover", "pna", "swa_rna_gagu_20_append_floating_base_by_jump", "rosetta_scripts_include", "non-canonical_connectivities", "dgdp_aio", "splice_in_4loops_shorter", "rosetta_scripts_setup", "nonideal_rtmin", "rna_puzzle6_j67_into_p6p7rigidbody_thread1", "ligand_motif_discovery", "kinemage_grid_output", "mp_symmetry_load", "antibody_H3_camelid", "residue_energy_breakdown", "ligand_dock_script", "splice_out_H3_shorter", "protocol_metric", "erraser_minimize", "motif_dna_packer_design", "ambiguous_nmr_distance_constraint", "splice_out_L3_shorter", "hts_io", "entropy_correction", "rna_denovo_bps", "rna_motif", "autosetup_metals_centroid", "UBQ_E2_thioester", "ddG_scan", "vip", "FavorSequenceProfileMover", "docking_low_res", "swa_rna_gagu_05_prepend_to_5primeterminus", "helical_bundle_predict_psipred", "mp_relax", "rna_puzzle12_P5P6P7_DMS", "fold_from_loops", "SnugDock", "swm_l_rna", "match_1c2t", "swm_protein_move_inside_coiledcoil_by_bond", "ProQ", "distances", "swa_rna_gagu_08_append_dinucleotide", "splice_out_H1_H2_shorter", "swm_protein_move_inside_helix_by_bond", "antibody_designer_xml", "backrub_pilot", "crosslinkermover_tetrahedral_metal_asp", "UBQ_E2_thioester_two_ubiquitins", "splice_in_4loops_longer", "stored_residue_subset", "secondary_structure_output", "rna_denovo_bps_helix_ends", "ga_ligand_dock", "rna_denovo", "zinc_homodimer_design", "binselector_probins", "swm_general_polymer_sampler", "farnesyl", "swa_rna_gagu_12_helix_addition", "favor_coupling_tensor", "swa_rna_gagu_07_prepend_dinucleotide", "simple_cycpep_predict_nterm_isopeptide_lariat", "InterfaceAnalyzer_bothpack", "rosie_ligand_docking", "rnp_ddg_calc_mut", "mp_dock_ensemble", "pocket_relax", "swm_dna_bridge", "jscore", "pocket_measure", "ResidueDisorder", "loop_hash", "mp_loadtime", "database_session_resource", "simple_glycosylation_alternate_AAs", "mp_range_relax", "thermal_sampler", "dgdp_script", "ppi_v3_suiteD", "template_features", "mutate", "rs_flexbbmoves", "AlignPDBInfoToSequences", "swa_rna_gagu_23_append_and_kic_close", "docking_distance_constraints", "docking_local_refine", "swm_add_rosettascripts", "rna_denovo_new_FT_2in_dens", "rna_predict_chem_map", "c-term_conjugation", "genkic_sugars", "swa_protein_build_at_Nterminus", "broker", "cl_complex_rescore", "docking_local_refine_min", "database_jd2_compact_io", "per_residue_solvent_exposure", "rna_denovo_bps_fixed_ends", "swm_build_full_model", "rna_ribosome_tether", "ddG_of_mutation", "glycopeptidedocking_diglyco_long", "splice_out_H1_H2_same", "glycan_anomers", "exclusively_shared_jumps", "ga_ligand_dock_amino_acid", "mp_mutate_repack", "rs_loophash", "add_helix_sequence_constraints_advanced_setup", "antibody_numbering_converter", "swm_rna_move_align_dock", "rotamer_probability", "rotamer_recovery_compare_two_structures", "swm_rna_checkpoint_partition", "design_w_custom_palette-CAAs", "simple_cycpep_predict_tetrahedral_metal_asp", "antibody_designer", "simple_cycpep_predict_angle", "mp_interface_statistics", "simple_cycpep_predict_square_pyramidal_metal", "ppi_v3_suiteE", "FloppyTail", "remodel", "combine_silent", "selected_residue_count_metric", "mpil_find_pore_bbarrel", "docking_ensemble_prepack", "mp_dock_prepack", "ccd_ends_graft_mover_rs", "balancedKIC", "seed_ensemble_JD2_JI", "ppi_v3_suiteG", "rna_farfar_noncanonical_hairpin", "ddG_ensemble", "rna_denovo_grid_vdw", "mhc_epitope", "repack_with_elec_dens", "rnp_ddg_relax_command_1", "backrub", "metropolis_hastings", "ligand_dock_ensemble", "membrane_relax", "SID_ERMS_prediction", "rb_recces", "cycpep_rdkit_metric", "target_clash", "phiselector", "design_w_custom_palette-RNA", "rna_puzzle11_H2H3H4_run3_connectU40", "mp_dock", "netcharge_design_symm", "real_virt_mover", "rna_score", "swa_rna_gagu_17_append_floating_base", "cleanAlignment", "rna_denovo_RNP_low_res", "rosetta_scripts_loops", "mixed_monte_carlo", "CCS_PARCS", "swm_rna_loop_design", "pna_base_pairs", "startfrom_file", "swm_rna_nickedhelix", "glycan_relax", "simple_metrics_in_protocols", "fragmentpicker_integration_demo", "cycpep_design_pipeline", "hbonds", "hbs_design", "ppi_v3_suiteA", "swa_rna_gagu_22_prepend_and_kic_close", "netcharge_design", "fuzzy", "antibody_designer_camelid", "mp_ligand_interface", "remodel_disulfides_rosettascripts", "swm_protein_preminimize", "mp_dock_setup", "mp_score_jd2", "rna_minimize", "AnchoredPDBCreator", "ThreadingInputter", "super_aln", "mp_relax_w_ligand", "InterfaceAnalyzer_resfile", "hotspot_hashing", "database_jd2_io", "loop_grower_N_term_symm", "swm_beta_peptide_loop", "splice_out_L1_L2_shorter", "membrane_abinitio", "inv_kin_lig_loop_design", "oligourea_predict", "gen_lig_grids", "jd2test_PDBin_mmCIFout", "threefoldlinkermover_tbmb", "mp_transform", "swa_rna_gagu_06_append_to_3primeterminus", "swa_rna_gagu_02_prepend", "create_clash-based_repack_shell", "splice_out_L3_same", "metal_setup", "constel", "swa_protein_combine_loops", "swa_protein_CCDclose", "rdkit_metrics", "ralford_dump_rotamers", "InterfaceAnalyzer_allscores", "hotspot_graft", "per_residue_energies", "rna_denovo_new_FT_rna_two_chains", "InterfaceAnalyzer_ligand", "mp_quick_relax_ref2015_memb", "motif_score_filter", "fragment_picker", "simple_metric_features", "SID_rescore", "glycopeptidedocking", "mg_modeler_lores", "orbitals", "simple_metrics_b_factor", "sasa_metric_options", "rna_puzzle6_U75G76A77_on_thread1", "simple_glycosylation", "rna_assemble", "glycan_sequon_scanner", "ContactMolecularSurface", "mpil_find_pore_ahelical", "cst_info", "cart_min_glycans", "swm_rna_srl_triplet", "oop_create", "swa_rna_gagu_18_rebuild_bulge", "mp_symdock", "hotspot_stub_constraints", "match_1n9l", "pocket_suggest_targets", "favor_native_residue", "buried_unsat_kinemage", "pymol_cif", "loop_creation", "swa_rna_erraser", "SSElementSelector", "FilterReportAsPoseExtraScoresMover", "rnp_ddg_calc_wt", "swm_rna_move_inside_helix_by_bond", "swm_rna_singleloop", "auto-drrafter_setup_run_R2", "pertmin", "buried_unsat_voids_hbnet_design_symm", "helical_bundle_predict_skipping_residues", "splice_out_L1_L2_longer", "dihedral_constraint_generator", "ncaa_fixbb", "ppi_v3_suiteC", "fixbb" ], "total": 814 }, "tests": { "AddConstraintsToCurrentConformationMover": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/AddConstraintsToCurrentConformationMover/log and /home/benchmark/working_dir/main:62148/AddConstraintsToCurrentConformationMover/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AddConstraintsToCurrentConformationMover/log /home/benchmark/working_dir/main:62148/AddConstraintsToCurrentConformationMover/log\r\n14c14\r\n< core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "AlignPDBInfoToSequences": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c1 and /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c1 differ\r\nFiles /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c2 and /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c2 differ\r\nFiles /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c3 and /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c3 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c1 /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c1\r\n14c14\r\n< core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c2 /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c2\r\n14c14\r\n< core.import_pose.import_pose: File '1GL2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1GL2.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AlignPDBInfoToSequences/log_c3 /home/benchmark/working_dir/main:62148/AlignPDBInfoToSequences/log_c3\r\n14c14\r\n< core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1PEF.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "AlterSpecDisruption": { "log": "", "state": "passed" }, "AnchorFinder": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/AnchorFinder/log and /home/benchmark/working_dir/main:62148/AnchorFinder/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AnchorFinder/log /home/benchmark/working_dir/main:62148/AnchorFinder/log\r\n34c34\r\n< core.import_pose.import_pose: File './pdbs/3cym.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cym.pdb.gz' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File './pdbs/3cy2.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cy2.pdb.gz' automatically determined to be of type PDB from contents.\r\n629c629\r\n< core.import_pose.import_pose: File './pdbs/3cyh.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyh.pdb.gz' automatically determined to be of type PDB from contents.\r\n968c968\r\n< core.import_pose.import_pose: File './pdbs/3cyu.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyu.pdb.gz' automatically determined to be of type PDB from contents.\r\n980c980\r\n< core.import_pose.import_pose: File './pdbs/3cye.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cye.pdb.gz' automatically determined to be of type PDB from contents.\r\n2599c2599\r\n< core.import_pose.import_pose: File './pdbs/3cyj.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyj.pdb.gz' automatically determined to be of type PDB from contents.\r\n5551c5551\r\n< core.import_pose.import_pose: File './pdbs/3cyg.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyg.pdb.gz' automatically determined to be of type PDB from contents.\r\n6441c6441\r\n< core.import_pose.import_pose: File './pdbs/3cyi.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyi.pdb.gz' automatically determined to be of type PDB from contents.\r\n6449c6449\r\n< core.import_pose.import_pose: File './pdbs/3cyv.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyv.pdb.gz' automatically determined to be of type PDB from contents.\r\n6454c6454\r\n< core.import_pose.import_pose: File './pdbs/3cyr.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyr.pdb.gz' automatically determined to be of type PDB from contents.\r\n6554c6554\r\n< core.import_pose.import_pose: File './pdbs/3cy6.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cy6.pdb.gz' automatically determined to be of type PDB from contents.\r\n6560c6560\r\n< core.import_pose.import_pose: File './pdbs/3cyk.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyk.pdb.gz' automatically determined to be of type PDB from contents.\r\n7536c7536\r\n< core.import_pose.import_pose: File './pdbs/3cyf.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyf.pdb.gz' automatically determined to be of type PDB from contents.\r\n7543c7543\r\n< core.import_pose.import_pose: File './pdbs/3cyp.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyp.pdb.gz' automatically determined to be of type PDB from contents.\r\n8603c8603\r\n< core.import_pose.import_pose: File './pdbs/3cyo.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyo.pdb.gz' automatically determined to be of type PDB from contents.\r\n8610c8610\r\n< core.import_pose.import_pose: File './pdbs/3cyy.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyy.pdb.gz' automatically determined to be of type PDB from contents.\r\n8980c8980\r\n< core.import_pose.import_pose: File './pdbs/3cyq.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyq.pdb.gz' automatically determined to be of type PDB from contents.\r\n13253c13253\r\n< core.import_pose.import_pose: File './pdbs/3cy3.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cy3.pdb.gz' automatically determined to be of type PDB from contents.\r\n13839c13839\r\n< core.import_pose.import_pose: File './pdbs/3cyl.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyl.pdb.gz' automatically determined to be of type PDB from contents.\r\n14373c14373\r\n< core.import_pose.import_pose: File './pdbs/3cyz.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cyz.pdb.gz' automatically determined to be of type PDB from contents.\r\n14860c14860\r\n< core.import_pose.import_pose: File './pdbs/3cy4.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdbs/3cy4.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "AnchoredDesign": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/AnchoredDesign/log and /home/benchmark/working_dir/main:62148/AnchoredDesign/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AnchoredDesign/log /home/benchmark/working_dir/main:62148/AnchoredDesign/log\r\n14c14\r\n< core.import_pose.import_pose: File '1FNA_2DF6a_BC1_start.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1FNA_2DF6a_BC1_start.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "AnchoredPDBCreator": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/AnchoredPDBCreator/log and /home/benchmark/working_dir/main:62148/AnchoredPDBCreator/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/AnchoredPDBCreator/log /home/benchmark/working_dir/main:62148/AnchoredPDBCreator/log\r\n9,10c9,10\r\n< core.import_pose.import_pose: File '1FNA_22.27del_noFGdel.pdb.gz' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'anchor.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1FNA_22.27del_noFGdel.pdb.gz' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'anchor.pdb.gz' automatically determined to be of type PDB from contents.\r\n12c12\r\n< core.import_pose.import_pose: File 'target.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'target.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "BFactorSelector": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/BFactorSelector/log_case1 and /home/benchmark/working_dir/main:62148/BFactorSelector/log_case1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/BFactorSelector/log_case1 /home/benchmark/working_dir/main:62148/BFactorSelector/log_case1\r\n14c14\r\n< core.import_pose.import_pose: File 'model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "BuildPeptide": { "log": "", "state": "passed" }, "CCD_loop_closure": { "log": "", "state": "passed" }, "CCS_PARCS": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/CCS_PARCS/log and /home/benchmark/working_dir/main:62148/CCS_PARCS/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/CCS_PARCS/log /home/benchmark/working_dir/main:62148/CCS_PARCS/log\r\n8c8\r\n< core.import_pose.import_pose: File './r_2MLT_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './r_2MLT_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ConsensusLoopDesign": { "log": "", "state": "passed" }, "ContactMolecularSurface": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ContactMolecularSurface/log and /home/benchmark/working_dir/main:62148/ContactMolecularSurface/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ContactMolecularSurface/log /home/benchmark/working_dir/main:62148/ContactMolecularSurface/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/aaFR02_54569.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/aaFR02_54569.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "DARC_electrostatics": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/DARC_electrostatics/log and /home/benchmark/working_dir/main:62148/DARC_electrostatics/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_electrostatics/log /home/benchmark/working_dir/main:62148/DARC_electrostatics/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents.\r\n11c11\r\n< core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "DARC_make_ray_files": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/DARC_make_ray_files/log and /home/benchmark/working_dir/main:62148/DARC_make_ray_files/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_make_ray_files/log /home/benchmark/working_dir/main:62148/DARC_make_ray_files/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents.\r\n10c10\r\n< core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "DARC_sampling_on_the_fly": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/DARC_sampling_on_the_fly/log and /home/benchmark/working_dir/main:62148/DARC_sampling_on_the_fly/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_sampling_on_the_fly/log /home/benchmark/working_dir/main:62148/DARC_sampling_on_the_fly/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents.\r\n11c11\r\n< core.import_pose.import_pose: File 'input/00K_conformers.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/00K_conformers.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "DARC_shapeonly": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/DARC_shapeonly/log and /home/benchmark/working_dir/main:62148/DARC_shapeonly/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DARC_shapeonly/log /home/benchmark/working_dir/main:62148/DARC_shapeonly/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/rosetta_4ERF.pdb' automatically determined to be of type PDB from contents.\r\n11c11\r\n< core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4ERF_XTL_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "DNA_methylation": { "log": "", "state": "passed" }, "DumpTrajectoryEnergy": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy/log and /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy/log /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "DumpTrajectoryEnergy_packing": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy_packing/log and /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy_packing/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/DumpTrajectoryEnergy_packing/log /home/benchmark/working_dir/main:62148/DumpTrajectoryEnergy_packing/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "Enzrevert_xml": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/Enzrevert_xml/log and /home/benchmark/working_dir/main:62148/Enzrevert_xml/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/Enzrevert_xml/log /home/benchmark/working_dir/main:62148/Enzrevert_xml/log\r\n16c16\r\n< core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'inputs/1kux_rlxed_design30.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1kux_rlxed_design30.pdb' automatically determined to be of type PDB from contents.\r\n81c81\r\n< core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents.\r\n115c115\r\n< core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents.\r\n136c136\r\n< core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1kux_rlxed_matchnative.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "FavorSequenceProfileMover": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/FavorSequenceProfileMover/log and /home/benchmark/working_dir/main:62148/FavorSequenceProfileMover/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/FavorSequenceProfileMover/log /home/benchmark/working_dir/main:62148/FavorSequenceProfileMover/log\r\n11c11\r\n< core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.\r\n15c15\r\n< core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.\r\n55c55\r\n< core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.\r\n94c94\r\n< core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.\r\n97c97\r\n< core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "FilterReportAsPoseExtraScoresMover": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/FilterReportAsPoseExtraScoresMover/log and /home/benchmark/working_dir/main:62148/FilterReportAsPoseExtraScoresMover/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/FilterReportAsPoseExtraScoresMover/log /home/benchmark/working_dir/main:62148/FilterReportAsPoseExtraScoresMover/log\r\n14c14\r\n< core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "FlipChirality": { "log": "", "state": "passed" }, "FloppyTail": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/FloppyTail/log and /home/benchmark/working_dir/main:62148/FloppyTail/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/FloppyTail/log /home/benchmark/working_dir/main:62148/FloppyTail/log\r\n43c43\r\n< core.import_pose.import_pose: File 'complex_readytail_final_nozn.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'complex_readytail_final_nozn.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "HDXEnergy": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/HDXEnergy/log and /home/benchmark/working_dir/main:62148/HDXEnergy/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/HDXEnergy/log /home/benchmark/working_dir/main:62148/HDXEnergy/log\r\n8c8\r\n< core.import_pose.import_pose: File '1a2p_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1a2p_A.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "HOW_TO_MAKE_TESTS": { "log": "", "state": "passed" }, "HelixBendFilter": { "log": "", "state": "passed" }, "InterfaceAnalyzer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.default and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.default differ\r\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.rs and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.rs differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.default /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.default\r\n35c35\r\n< core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer/log.rs /home/benchmark/working_dir/main:62148/InterfaceAnalyzer/log.rs\r\n14c14\r\n< core.import_pose.import_pose: File '1KX5_chAB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1KX5_chAB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceAnalyzer_allscores": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_allscores/log.allscores and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_allscores/log.allscores differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_allscores/log.allscores /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_allscores/log.allscores\r\n35c35\r\n< core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceAnalyzer_bothpack": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_bothpack/log.bothpack and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_bothpack/log.bothpack differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_bothpack/log.bothpack /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_bothpack/log.bothpack\r\n35c35\r\n< core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceAnalyzer_ligand": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_ligand/log.default and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_ligand/log.default differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_ligand/log.default /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_ligand/log.default\r\n35c35\r\n< core.import_pose.import_pose: File 'min_renumbered_AHo.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'min_renumbered_AHo.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceAnalyzer_metrics": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_metrics/log.rs and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_metrics/log.rs differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_metrics/log.rs /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_metrics/log.rs\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/InterfaceAnalyzer/1KX5_chAB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/InterfaceAnalyzer/1KX5_chAB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceAnalyzer_prepack": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_prepack/log.prepack and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_prepack/log.prepack differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_prepack/log.prepack /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_prepack/log.prepack\r\n35c35\r\n< core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceAnalyzer_resfile": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_resfile/log.resfile and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_resfile/log.resfile differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_resfile/log.resfile /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_resfile/log.resfile\r\n35c35\r\n< core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceAnalyzer_tracer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_tracer/log.tracer and /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_tracer/log.tracer differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceAnalyzer_tracer/log.tracer /home/benchmark/working_dir/main:62148/InterfaceAnalyzer_tracer/log.tracer\r\n35c35\r\n< core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../InterfaceAnalyzer/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "InterfaceDdG": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/InterfaceDdG/log_db_output and /home/benchmark/working_dir/main:62148/InterfaceDdG/log_db_output differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/InterfaceDdG/log_db_output /home/benchmark/working_dir/main:62148/InterfaceDdG/log_db_output\r\n14c14\r\n< core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB from contents.\r\n85c85\r\n< core.import_pose.import_pose: File '3fod_mutated.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3fod_mutated.pdb' automatically determined to be of type PDB from contents.\r\n208c208\r\n< core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB from contents.\r\n270c270\r\n< core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3fod.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "KIC_refine": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/KIC_refine/log and /home/benchmark/working_dir/main:62148/KIC_refine/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/KIC_refine/log /home/benchmark/working_dir/main:62148/KIC_refine/log\r\n43c43\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n66c66\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "KIC_vicinity": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/KIC_vicinity/log and /home/benchmark/working_dir/main:62148/KIC_vicinity/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/KIC_vicinity/log /home/benchmark/working_dir/main:62148/KIC_vicinity/log\r\n43c43\r\n< core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents.\r\n73c73\r\n< core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents.\r\n84c84\r\n< core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents.\r\n103c103\r\n< core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents.\r\n114c114\r\n< core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2vkn.start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "KIC_with_fragments": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/KIC_with_fragments/log and /home/benchmark/working_dir/main:62148/KIC_with_fragments/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/KIC_with_fragments/log /home/benchmark/working_dir/main:62148/KIC_with_fragments/log\r\n54c54\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n63c63\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n65c65\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n75c75\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n77c77\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n85c85\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n87c87\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n178c178\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "LayerDesign": { "log": "", "state": "passed" }, "LayerDesign_symm": { "log": "", "state": "passed" }, "LayerSelector": { "log": "", "state": "passed" }, "LoopAnalyzer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_file and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_file differ\r\nFiles /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_tag and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_tag differ\r\nFiles /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_file and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_file differ\r\nFiles /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_tag and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_tag differ\r\nFiles /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LoopAnalyzer_pilot and /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LoopAnalyzer_pilot differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_file /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_file\r\n14c14\r\n< core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAF_tag /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAF_tag\r\n14c14\r\n< core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_file /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_file\r\n14c14\r\n< core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LAM_tag /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LAM_tag\r\n14c14\r\n< core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopAnalyzer/log.LoopAnalyzer_pilot /home/benchmark/working_dir/main:62148/LoopAnalyzer/log.LoopAnalyzer_pilot\r\n35c35\r\n< core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "LoopLengthChange": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/LoopLengthChange/log and /home/benchmark/working_dir/main:62148/LoopLengthChange/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/LoopLengthChange/log /home/benchmark/working_dir/main:62148/LoopLengthChange/log\r\n14c14\r\n< core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ModifyVariantTypeMover": { "log": "", "state": "passed" }, "MutateResidue_selector": { "log": "", "state": "passed" }, "N-terminal_acetylation": { "log": "", "state": "passed" }, "OversaturatedHbondAcceptorFilter": { "log": "", "state": "passed" }, "PDB_diagnostic": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/PDB_diagnostic/log and /home/benchmark/working_dir/main:62148/PDB_diagnostic/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/PDB_diagnostic/log /home/benchmark/working_dir/main:62148/PDB_diagnostic/log\r\n33c33\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cym.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cym.pdb.gz' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy2.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy2.pdb.gz' automatically determined to be of type PDB from contents.\r\n65c65\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyh.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyh.pdb.gz' automatically determined to be of type PDB from contents.\r\n77c77\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyu.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyu.pdb.gz' automatically determined to be of type PDB from contents.\r\n82c82\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyj.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyj.pdb.gz' automatically determined to be of type PDB from contents.\r\n171c171\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyg.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyg.pdb.gz' automatically determined to be of type PDB from contents.\r\n250c250\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyi.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyi.pdb.gz' automatically determined to be of type PDB from contents.\r\n256c256\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyv.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyv.pdb.gz' automatically determined to be of type PDB from contents.\r\n261c261\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyr.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyr.pdb.gz' automatically determined to be of type PDB from contents.\r\n356c356\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy6.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy6.pdb.gz' automatically determined to be of type PDB from contents.\r\n362c362\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyk.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyk.pdb.gz' automatically determined to be of type PDB from contents.\r\n371c371\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyf.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyf.pdb.gz' automatically determined to be of type PDB from contents.\r\n382c382\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyp.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyp.pdb.gz' automatically determined to be of type PDB from contents.\r\n403c403\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyo.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyo.pdb.gz' automatically determined to be of type PDB from contents.\r\n410c410\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyy.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyy.pdb.gz' automatically determined to be of type PDB from contents.\r\n437c437\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyq.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyq.pdb.gz' automatically determined to be of type PDB from contents.\r\n522c522\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy3.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cy3.pdb.gz' automatically determined to be of type PDB from contents.\r\n554c554\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyl.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyl.pdb.gz' automatically determined to be of type PDB from contents.\r\n592c592\r\n< core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyz.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/AnchorFinder/pdbs/3cyz.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "PTMPrediction": { "log": "", "state": "passed" }, "PeptideCyclizeMover": { "log": "", "state": "passed" }, "PeptideStubMover_prependRepeat": { "log": "", "state": "passed" }, "PolarDesign2019": { "log": "", "state": "passed" }, "ProQ": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ProQ/log and /home/benchmark/working_dir/main:62148/ProQ/log differ\r\nFiles /home/benchmark/working_dir/main:62147/ProQ/log.membrane and /home/benchmark/working_dir/main:62148/ProQ/log.membrane differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ProQ/log /home/benchmark/working_dir/main:62148/ProQ/log\r\n57c57\r\n< core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ProQ/log.membrane /home/benchmark/working_dir/main:62148/ProQ/log.membrane\r\n305c305\r\n< core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents.\r\n307c307\r\n< core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1e12A_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "RBOut": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/RBOut/log and /home/benchmark/working_dir/main:62148/RBOut/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/RBOut/log /home/benchmark/working_dir/main:62148/RBOut/log\r\n12c12\r\n< core.import_pose.import_pose: File '1AHW_vl_vh.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1AHW_vl_vh.pdb' automatically determined to be of type PDB from contents.\r\n140c140\r\n< core.import_pose.import_pose: File '1AHW_2BRR.ppk_ideal_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1AHW_2BRR.ppk_ideal_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ReadResfile_with_selector": { "log": "", "state": "passed" }, "RescorePDDF": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/RescorePDDF/log_PDDF and /home/benchmark/working_dir/main:62148/RescorePDDF/log_PDDF differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/RescorePDDF/log_PDDF /home/benchmark/working_dir/main:62148/RescorePDDF/log_PDDF\r\n32c32\r\n< core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB from contents.\r\n34c34\r\n< core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1igdA-idealized.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "RescoreSAXS": { "log": "", "state": "passed" }, "ResidueDisorder": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ResidueDisorder/log and /home/benchmark/working_dir/main:62148/ResidueDisorder/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ResidueDisorder/log /home/benchmark/working_dir/main:62148/ResidueDisorder/log\r\n9,13c9,13\r\n< core.import_pose.import_pose: File './inputs/1aj3_0001.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/1aj3_0002.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/1aj3_0003.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/1aj3_0004.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/1aj3_0005.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/1aj3_0001.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/1aj3_0002.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/1aj3_0003.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/1aj3_0004.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/1aj3_0005.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "RunSimpleMetric_b_factor_test": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/RunSimpleMetric_b_factor_test/log and /home/benchmark/working_dir/main:62148/RunSimpleMetric_b_factor_test/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/RunSimpleMetric_b_factor_test/log /home/benchmark/working_dir/main:62148/RunSimpleMetric_b_factor_test/log\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "SID_ERMS_prediction": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/SID_ERMS_prediction/log and /home/benchmark/working_dir/main:62148/SID_ERMS_prediction/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SID_ERMS_prediction/log /home/benchmark/working_dir/main:62148/SID_ERMS_prediction/log\r\n18c18\r\n< core.import_pose.import_pose: File './inputs/relax_1swb_ABCD_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/relax_1swb_ABCD_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "SID_rescore": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/SID_rescore/log and /home/benchmark/working_dir/main:62148/SID_rescore/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SID_rescore/log /home/benchmark/working_dir/main:62148/SID_rescore/log\r\n8c8\r\n< core.import_pose.import_pose: File './1fgb_D_E_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './1fgb_D_E_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "SSElementSelector": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/SSElementSelector/log and /home/benchmark/working_dir/main:62148/SSElementSelector/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SSElementSelector/log /home/benchmark/working_dir/main:62148/SSElementSelector/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "SecondaryStructureFilter": { "log": "", "state": "passed" }, "SnugDock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/SnugDock/log and /home/benchmark/working_dir/main:62148/SnugDock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/SnugDock/log /home/benchmark/working_dir/main:62148/SnugDock/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/aaFR02_54569_ppk.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/aaFR02_54569_ppk.pdb' automatically determined to be of type PDB from contents.\r\n2320,2321c2320,2321\r\n< core.import_pose.import_pose: File 'input/ab1.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/ab2.pdb.ppk' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/ab1.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/ab2.pdb.ppk' automatically determined to be of type PDB from contents.\r\n2326,2327c2326,2327\r\n< core.import_pose.import_pose: File 'input/ag1.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/ag2.pdb.ppk' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/ag1.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/ag2.pdb.ppk' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "StrandCurvatureByLevels": { "log": "", "state": "passed" }, "StrandHelixGeometryFilter": { "log": "", "state": "passed" }, "ThreadingInputter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ThreadingInputter/log and /home/benchmark/working_dir/main:62148/ThreadingInputter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ThreadingInputter/log /home/benchmark/working_dir/main:62148/ThreadingInputter/log\r\n1313c1313\r\n< core.import_pose.import_pose: File 'input/1vyhA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1vyhA.pdb' automatically determined to be of type PDB from contents.\r\n9346c9346\r\n< core.import_pose.import_pose: File 'input/1fxwF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1fxwF.pdb' automatically determined to be of type PDB from contents.\r\n17158c17158\r\n< core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "TryDisulfPermutations": { "log": "", "state": "passed" }, "UBQ_E2_thioester": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/UBQ_E2_thioester/log and /home/benchmark/working_dir/main:62148/UBQ_E2_thioester/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_E2_thioester/log /home/benchmark/working_dir/main:62148/UBQ_E2_thioester/log\r\n37c37\r\n< core.import_pose.import_pose: File '2OB4_trimmed.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2OB4_trimmed.pdb.gz' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "UBQ_E2_thioester_extra_bodies": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_extra_bodies/log and /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_extra_bodies/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_extra_bodies/log /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_extra_bodies/log\r\n62c62\r\n< core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB from contents.\r\n67c67\r\n< core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB from contents.\r\n70,71c70,71\r\n< core.import_pose.import_pose: File 'Cul1.pdb.gz' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'RING.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'Cul1.pdb.gz' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'RING.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "UBQ_E2_thioester_two_ubiquitins": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_two_ubiquitins/log and /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_two_ubiquitins/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_E2_thioester_two_ubiquitins/log /home/benchmark/working_dir/main:62148/UBQ_E2_thioester_two_ubiquitins/log\r\n62c62\r\n< core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cdc34_hopefulloop.pdb.gz' automatically determined to be of type PDB from contents.\r\n67c67\r\n< core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ_repacked.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "UBQ_Gp_CYD-CYD": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/UBQ_Gp_CYD-CYD/log_CYD and /home/benchmark/working_dir/main:62148/UBQ_Gp_CYD-CYD/log_CYD differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_Gp_CYD-CYD/log_CYD /home/benchmark/working_dir/main:62148/UBQ_Gp_CYD-CYD/log_CYD\r\n38,39c38,39\r\n< core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "UBQ_Gp_LYX-Cterm": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/UBQ_Gp_LYX-Cterm/log_LYX and /home/benchmark/working_dir/main:62148/UBQ_Gp_LYX-Cterm/log_LYX differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/UBQ_Gp_LYX-Cterm/log_LYX /home/benchmark/working_dir/main:62148/UBQ_Gp_LYX-Cterm/log_LYX\r\n42c42\r\n< core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/5P21_repacked.pdb.gz' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../UBQ_Gp_CYD-CYD/1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "UnsatSelector": { "log": "", "state": "passed" }, "Werror_check": { "log": "", "state": "passed" }, "abinitio": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/abinitio/log and /home/benchmark/working_dir/main:62148/abinitio/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/abinitio/log /home/benchmark/working_dir/main:62148/abinitio/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n12c12\r\n< core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "abinitio_with_trRosetta": { "log": "", "state": "passed" }, "add_constraints_to_current_conformation": { "log": "", "state": "passed" }, "add_helix_sequence_constraints": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints/log1 and /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints/log1 /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints/log1\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.\r\n350c350\r\n< core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.\r\n537c537\r\n< core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "add_helix_sequence_constraints_advanced_setup": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints_advanced_setup/log1 and /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints_advanced_setup/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/add_helix_sequence_constraints_advanced_setup/log1 /home/benchmark/working_dir/main:62148/add_helix_sequence_constraints_advanced_setup/log1\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.\r\n346c346\r\n< core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.\r\n528c528\r\n< core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2ND2_state1_glyonly.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "add_job_pair_data": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/add_job_pair_data/log and /home/benchmark/working_dir/main:62148/add_job_pair_data/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/add_job_pair_data/log /home/benchmark/working_dir/main:62148/add_job_pair_data/log\r\n14c14\r\n< core.import_pose.import_pose: File '1ubi.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ubi.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ambiguous_nmr_distance_constraint": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ambiguous_nmr_distance_constraint/log and /home/benchmark/working_dir/main:62148/ambiguous_nmr_distance_constraint/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ambiguous_nmr_distance_constraint/log /home/benchmark/working_dir/main:62148/ambiguous_nmr_distance_constraint/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/6VLJ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/6VLJ.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "angle_recovery_stats": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/angle_recovery_stats/log and /home/benchmark/working_dir/main:62148/angle_recovery_stats/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/angle_recovery_stats/log /home/benchmark/working_dir/main:62148/angle_recovery_stats/log\r\n10c10\r\n< core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "antibody_H3": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/antibody_H3/log and /home/benchmark/working_dir/main:62148/antibody_H3/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_H3/log /home/benchmark/working_dir/main:62148/antibody_H3/log\r\n10c10\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n84c84\r\n< core.import_pose.import_pose: File './inputs/FR02.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/FR02.pdb' automatically determined to be of type PDB from contents.\r\n157c157\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n160c160\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n163c163\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n388c388\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n391c391\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n394c394\r\n< core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "antibody_H3_camelid": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/antibody_H3_camelid/log and /home/benchmark/working_dir/main:62148/antibody_H3_camelid/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_H3_camelid/log /home/benchmark/working_dir/main:62148/antibody_H3_camelid/log\r\n10c10\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n77c77\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n82c82\r\n< core.import_pose.import_pose: File './inputs/FR02_H.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/FR02_H.pdb' automatically determined to be of type PDB from contents.\r\n128c128\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n130c130\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n132c132\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n193c193\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n195c195\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n197c197\r\n< core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/H_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "antibody_cc": { "log": "", "state": "passed" }, "antibody_designer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/antibody_designer/log and /home/benchmark/working_dir/main:62148/antibody_designer/log differ\r\nFiles /home/benchmark/working_dir/main:62147/antibody_designer/log2 and /home/benchmark/working_dir/main:62148/antibody_designer/log2 differ\r\nFiles /home/benchmark/working_dir/main:62147/antibody_designer/log_nanobody and /home/benchmark/working_dir/main:62148/antibody_designer/log_nanobody differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer/log /home/benchmark/working_dir/main:62148/antibody_designer/log\r\n15c15\r\n< core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer/log2 /home/benchmark/working_dir/main:62148/antibody_designer/log2\r\n16c16\r\n< core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mis_start.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer/log_nanobody /home/benchmark/working_dir/main:62148/antibody_designer/log_nanobody\r\n15c15\r\n< core.import_pose.import_pose: File 'mis_nanobody.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mis_nanobody.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "antibody_designer_camelid": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/antibody_designer_camelid/log and /home/benchmark/working_dir/main:62148/antibody_designer_camelid/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer_camelid/log /home/benchmark/working_dir/main:62148/antibody_designer_camelid/log\r\n15c15\r\n< core.import_pose.import_pose: File 'camelid_design_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'camelid_design_test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "antibody_designer_xml": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/antibody_designer_xml/log and /home/benchmark/working_dir/main:62148/antibody_designer_xml/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_designer_xml/log /home/benchmark/working_dir/main:62148/antibody_designer_xml/log\r\n14c14\r\n< core.import_pose.import_pose: File 'my_ab.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'my_ab.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "antibody_graft": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/antibody_graft/log and /home/benchmark/working_dir/main:62148/antibody_graft/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_graft/log /home/benchmark/working_dir/main:62148/antibody_graft/log\r\n10c10\r\n< core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './LH_renumbered.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'FR.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FR.pdb' automatically determined to be of type PDB from contents.\r\n83c83\r\n< core.import_pose.import_pose: File './L1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './L1.pdb' automatically determined to be of type PDB from contents.\r\n105c105\r\n< core.import_pose.import_pose: File './L2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './L2.pdb' automatically determined to be of type PDB from contents.\r\n124c124\r\n< core.import_pose.import_pose: File './L3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './L3.pdb' automatically determined to be of type PDB from contents.\r\n126c126\r\n< core.import_pose.import_pose: File './H1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './H1.pdb' automatically determined to be of type PDB from contents.\r\n134c134\r\n< core.import_pose.import_pose: File './H2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './H2.pdb' automatically determined to be of type PDB from contents.\r\n136c136\r\n< core.import_pose.import_pose: File './H3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './H3.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "antibody_numbering_converter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/antibody_numbering_converter/log and /home/benchmark/working_dir/main:62148/antibody_numbering_converter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/antibody_numbering_converter/log /home/benchmark/working_dir/main:62148/antibody_numbering_converter/log\r\n14c14\r\n< core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "app_exception_handling": { "log": "", "state": "passed" }, "assemble_domains_jd2": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/assemble_domains_jd2/log and /home/benchmark/working_dir/main:62148/assemble_domains_jd2/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/assemble_domains_jd2/log /home/benchmark/working_dir/main:62148/assemble_domains_jd2/log\r\n49c49\r\n< core.import_pose.import_pose: File 'input/dock_start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/dock_start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "auto-drrafter_final_results": { "log": "", "state": "passed" }, "auto-drrafter_setup_run_R1": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R1/log and /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R1/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R1/log /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R1/log\r\n28c28\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n30c30\r\n< core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n55c55\r\n< core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n200c200\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n202c202\r\n< core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n225c225\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_0.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n227c227\r\n< core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H1_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n372c372\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n374c374\r\n< core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n397c397\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n399c399\r\n< core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n541c541\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n543c543\r\n< core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n566c566\r\n< core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_aligned_mini_example_1.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n568c568\r\n< core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_example_H0_full.out.1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "auto-drrafter_setup_run_R2": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R2/log and /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R2/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R2/log /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R2/log\r\n20c20\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n22,25c22,25\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n50,53c50,53\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n228c228\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n230,233c230,233\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n256c256\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n258,261c258,261\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_S1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_L0_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'FINAL_R2_region_H1_mini_example_all_models_all_fits_R1.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R2.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "auto-drrafter_setup_run_R3": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R3/log and /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R3/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/auto-drrafter_setup_run_R3/log /home/benchmark/working_dir/main:62148/auto-drrafter_setup_run_R3/log\r\n20c20\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n188c188\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n211c211\r\n< core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'all_fit_mini_example_FINAL_R3.REORDER.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "autoNOE_rosetta": { "log": "", "state": "passed" }, "autosetup_metals_centroid": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/autosetup_metals_centroid/log and /home/benchmark/working_dir/main:62148/autosetup_metals_centroid/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/autosetup_metals_centroid/log /home/benchmark/working_dir/main:62148/autosetup_metals_centroid/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "backbonegridsampler": { "log": "", "state": "passed" }, "backbonegridsampler_multiresidue": { "log": "", "state": "passed" }, "backbonegridsampler_nstruct_mode": { "log": "", "state": "passed" }, "backrub": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/backrub/log_advanced and /home/benchmark/working_dir/main:62148/backrub/log_advanced differ\r\nFiles /home/benchmark/working_dir/main:62147/backrub/log_basic and /home/benchmark/working_dir/main:62148/backrub/log_basic differ\r\nFiles /home/benchmark/working_dir/main:62147/backrub/log_movemap and /home/benchmark/working_dir/main:62148/backrub/log_movemap differ\r\nFiles /home/benchmark/working_dir/main:62147/backrub/log_xml and /home/benchmark/working_dir/main:62148/backrub/log_xml differ\r\nFiles /home/benchmark/working_dir/main:62147/backrub/log_xml_mmf and /home/benchmark/working_dir/main:62148/backrub/log_xml_mmf differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_advanced /home/benchmark/working_dir/main:62148/backrub/log_advanced\r\n16c16\r\n< core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_basic /home/benchmark/working_dir/main:62148/backrub/log_basic\r\n16c16\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_movemap /home/benchmark/working_dir/main:62148/backrub/log_movemap\r\n16c16\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_xml /home/benchmark/working_dir/main:62148/backrub/log_xml\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub/log_xml_mmf /home/benchmark/working_dir/main:62148/backrub/log_xml_mmf\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "backrub_interface_ddG": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/backrub_interface_ddG/log_output and /home/benchmark/working_dir/main:62148/backrub_interface_ddG/log_output differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_interface_ddG/log_output /home/benchmark/working_dir/main:62148/backrub_interface_ddG/log_output\r\n14c14\r\n< core.import_pose.import_pose: File '2LVO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2LVO.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "backrub_pilot": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/backrub_pilot/log_advanced and /home/benchmark/working_dir/main:62148/backrub_pilot/log_advanced differ\r\nFiles /home/benchmark/working_dir/main:62147/backrub_pilot/log_basic and /home/benchmark/working_dir/main:62148/backrub_pilot/log_basic differ\r\nFiles /home/benchmark/working_dir/main:62147/backrub_pilot/log_detailed_balance and /home/benchmark/working_dir/main:62148/backrub_pilot/log_detailed_balance differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_pilot/log_advanced /home/benchmark/working_dir/main:62148/backrub_pilot/log_advanced\r\n34c34\r\n< core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFGft.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_pilot/log_basic /home/benchmark/working_dir/main:62148/backrub_pilot/log_basic\r\n34c34\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/backrub_pilot/log_detailed_balance /home/benchmark/working_dir/main:62148/backrub_pilot/log_detailed_balance\r\n34c34\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "balancedKIC": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/balancedKIC/log_loops and /home/benchmark/working_dir/main:62148/balancedKIC/log_loops differ\r\nFiles /home/benchmark/working_dir/main:62147/balancedKIC/log_xml and /home/benchmark/working_dir/main:62148/balancedKIC/log_xml differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/balancedKIC/log_loops /home/benchmark/working_dir/main:62148/balancedKIC/log_loops\r\n14c14\r\n< core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/balancedKIC/log_xml /home/benchmark/working_dir/main:62148/balancedKIC/log_xml\r\n14c14\r\n< core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'P.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "basic_gcn_tensorflow_test": { "log": "", "state": "passed" }, "batch_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/batch_relax/log and /home/benchmark/working_dir/main:62148/batch_relax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/batch_relax/log /home/benchmark/working_dir/main:62148/batch_relax/log\r\n10c10\r\n< core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.\r\n394c394\r\n< core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.\r\n755c755\r\n< core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.\r\n1116c1116\r\n< core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "bcl_fragment_mutate": { "log": "", "state": "passed" }, "beta_strand_homodimer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/beta_strand_homodimer/homodimer_design.log and /home/benchmark/working_dir/main:62148/beta_strand_homodimer/homodimer_design.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/beta_strand_homodimer/homodimer_design.log /home/benchmark/working_dir/main:62148/beta_strand_homodimer/homodimer_design.log\r\n21c21\r\n< core.import_pose.import_pose: File '2a7b_mpm_A806_anti_wind_1_step_1_INPUT.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2a7b_mpm_A806_anti_wind_1_step_1_INPUT.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "bin_initialization": { "log": "", "state": "passed" }, "bin_perturbation": { "log": "", "state": "passed" }, "binselector": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/binselector/log and /home/benchmark/working_dir/main:62148/binselector/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/binselector/log /home/benchmark/working_dir/main:62148/binselector/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "binselector_probins": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/binselector_probins/log and /home/benchmark/working_dir/main:62148/binselector_probins/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/binselector_probins/log /home/benchmark/working_dir/main:62148/binselector_probins/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "blob_finder": { "log": "", "state": "passed" }, "bridge_chains": { "log": "", "state": "passed" }, "broker": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/broker/log and /home/benchmark/working_dir/main:62148/broker/log differ\r\nFiles /home/benchmark/working_dir/main:62147/broker/log2 and /home/benchmark/working_dir/main:62148/broker/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/broker/log /home/benchmark/working_dir/main:62148/broker/log\r\n317c317\r\n< core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/broker/log2 /home/benchmark/working_dir/main:62148/broker/log2\r\n316c316\r\n< core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "broker_membrane": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/broker_membrane/log and /home/benchmark/working_dir/main:62148/broker_membrane/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/broker_membrane/log /home/benchmark/working_dir/main:62148/broker_membrane/log\r\n59c59\r\n< core.import_pose.import_pose: File 'input/native/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "bundlegridsampler": { "log": "", "state": "passed" }, "bundlegridsampler_composition_energy": { "log": "", "state": "passed" }, "bundlegridsampler_composition_energy_fract_range": { "log": "", "state": "passed" }, "bundlegridsampler_copy_pitch": { "log": "", "state": "passed" }, "bundlegridsampler_design": { "log": "", "state": "passed" }, "bundlegridsampler_design_nstruct_mode": { "log": "", "state": "passed" }, "bundlegridsampler_epsilon": { "log": "", "state": "passed" }, "bundlegridsampler_multirepeat": { "log": "", "state": "passed" }, "bundlegridsampler_z0_offset": { "log": "", "state": "passed" }, "bundlegridsampler_z1_offset": { "log": "", "state": "passed" }, "bundlereporter_filter": { "log": "", "state": "passed" }, "burial_measure_centroid": { "log": "", "state": "passed" }, "buried_area_filter": { "log": "", "state": "passed" }, "buried_unsat_kinemage": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/buried_unsat_kinemage/log and /home/benchmark/working_dir/main:62148/buried_unsat_kinemage/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/buried_unsat_kinemage/log /home/benchmark/working_dir/main:62148/buried_unsat_kinemage/log\r\n8c8\r\n< core.import_pose.import_pose: File '../../tests/UBQ_E2_thioester/1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/UBQ_E2_thioester/1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "buried_unsat_voids_hbnet_design": { "log": "", "state": "passed" }, "buried_unsat_voids_hbnet_design_symm": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/buried_unsat_voids_hbnet_design_symm/log and /home/benchmark/working_dir/main:62148/buried_unsat_voids_hbnet_design_symm/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/buried_unsat_voids_hbnet_design_symm/log /home/benchmark/working_dir/main:62148/buried_unsat_voids_hbnet_design_symm/log\r\n37c37\r\n< core.import_pose.import_pose: File 'inputs/S_4207.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/S_4207.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "c-term_conjugation": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/c-term_conjugation/log and /home/benchmark/working_dir/main:62148/c-term_conjugation/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/c-term_conjugation/log /home/benchmark/working_dir/main:62148/c-term_conjugation/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test_normal1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_normal1.pdb' automatically determined to be of type PDB from contents.\r\n10,11c10,11\r\n< core.import_pose.import_pose: File 'input/test_c_conj1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/UBQ_E2_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_c_conj1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/UBQ_E2_0001.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File 'input/UBQ_E2_0003.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/UBQ_E2_0003.pdb' automatically determined to be of type PDB from contents.\r\n24c24\r\n< core.import_pose.import_pose: File 'input/test_O_glycan.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_O_glycan.pdb' automatically determined to be of type PDB from contents.\r\n33c33\r\n< core.import_pose.import_pose: File 'input/test_O_glycan_centroid.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_O_glycan_centroid.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "calculate_sasa": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/calculate_sasa/log and /home/benchmark/working_dir/main:62148/calculate_sasa/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/calculate_sasa/log /home/benchmark/working_dir/main:62148/calculate_sasa/log\r\n8c8\r\n< core.import_pose.import_pose: File 'tripeptide.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'tripeptide.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "carbohydrates": { "log": "", "state": "passed" }, "cart_min_glycans": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cart_min_glycans/info.log and /home/benchmark/working_dir/main:62148/cart_min_glycans/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cart_min_glycans/info.log /home/benchmark/working_dir/main:62148/cart_min_glycans/info.log\r\n15c15\r\n< core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.\r\n458c458\r\n< core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cartesianddg": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cartesianddg/log and /home/benchmark/working_dir/main:62148/cartesianddg/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cartesianddg/log /home/benchmark/working_dir/main:62148/cartesianddg/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "case_sensitive_filenames": { "log": "", "state": "passed" }, "ccd_ends_graft_mover_rs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log and /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log differ\r\nFiles /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log_crystal and /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log_crystal differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log\r\n14c14\r\n< core.import_pose.import_pose: File '1ahw_m.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ahw_m.pdb' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ccd_ends_graft_mover_rs/log_crystal /home/benchmark/working_dir/main:62148/ccd_ends_graft_mover_rs/log_crystal\r\n14c14\r\n< core.import_pose.import_pose: File '1ahw_crystal_antigen.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ahw_crystal_antigen.pdb' automatically determined to be of type PDB from contents.\r\n117c117\r\n< core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ahw_model_antigen.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "central_class_modification": { "log": "", "state": "passed" }, "centroid_disulfide_scores": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/centroid_disulfide_scores/fa.log and /home/benchmark/working_dir/main:62148/centroid_disulfide_scores/fa.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_disulfide_scores/fa.log /home/benchmark/working_dir/main:62148/centroid_disulfide_scores/fa.log\r\n43c43\r\n< core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1IMX.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "centroid_from_fullatom": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_components and /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_components differ\r\nFiles /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_sdf and /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_sdf differ\r\nFiles /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_switch and /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_switch differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_components /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_components\r\n24c24\r\n< core.import_pose.import_pose: File '3N0G_trim.pdb XST_cif.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3N0G_trim.pdb XST_cif.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_sdf /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_sdf\r\n27c27\r\n< core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/centroid_from_fullatom/log_switch /home/benchmark/working_dir/main:62148/centroid_from_fullatom/log_switch\r\n14c14\r\n< core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3N0G_trim.pdb XST_params.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cl_complex_rescore": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cl_complex_rescore/log and /home/benchmark/working_dir/main:62148/cl_complex_rescore/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cl_complex_rescore/log /home/benchmark/working_dir/main:62148/cl_complex_rescore/log\r\n11c11\r\n< core.import_pose.import_pose: File './1yag_AG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './1yag_AG.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "classic_relax_1a19": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/classic_relax_1a19/log and /home/benchmark/working_dir/main:62148/classic_relax_1a19/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/classic_relax_1a19/log /home/benchmark/working_dir/main:62148/classic_relax_1a19/log\r\n36c36\r\n< core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cleanAlignment": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cleanAlignment/log and /home/benchmark/working_dir/main:62148/cleanAlignment/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cleanAlignment/log /home/benchmark/working_dir/main:62148/cleanAlignment/log\r\n35c35\r\n< core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cluster": { "log": "", "state": "passed" }, "cluster_alns": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cluster_alns/log and /home/benchmark/working_dir/main:62148/cluster_alns/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cluster_alns/log /home/benchmark/working_dir/main:62148/cluster_alns/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/1nqlA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1nqlA.pdb' automatically determined to be of type PDB from contents.\r\n194c194\r\n< core.import_pose.import_pose: File 'input/1rxqA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1rxqA.pdb' automatically determined to be of type PDB from contents.\r\n196c196\r\n< core.import_pose.import_pose: File 'input/1yy9A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1yy9A.pdb' automatically determined to be of type PDB from contents.\r\n310c310\r\n< core.import_pose.import_pose: File 'input/2f22A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2f22A.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cluster_calibur": { "log": "", "state": "passed" }, "cluster_filter": { "log": "", "state": "passed" }, "cmaes_minimizer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cmaes_minimizer/log and /home/benchmark/working_dir/main:62148/cmaes_minimizer/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cmaes_minimizer/log /home/benchmark/working_dir/main:62148/cmaes_minimizer/log\r\n8c8\r\n< core.import_pose.import_pose: File 'ALA10_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ALA10_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "coarse_rna_scoring": { "log": "", "state": "passed" }, "code_template_tests_app": { "log": "", "state": "passed" }, "code_template_tests_citations": { "log": "", "state": "passed" }, "code_template_tests_src": { "log": "", "state": "passed" }, "code_template_tests_unit": { "log": "", "state": "passed" }, "coenzymes": { "log": "", "state": "passed" }, "combine_silent": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/combine_silent/log and /home/benchmark/working_dir/main:62148/combine_silent/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/combine_silent/log /home/benchmark/working_dir/main:62148/combine_silent/log\r\n9c9\r\n< core.import_pose.import_pose: File 'inputs/1ubi.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1ubi.pdb' automatically determined to be of type PDB from contents.\r\n370c370\r\n< core.import_pose.import_pose: File 'inputs/S_0043_8119.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/S_0043_8119.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "composition_energy_layers": { "log": "", "state": "passed" }, "constel": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/constel/log and /home/benchmark/working_dir/main:62148/constel/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/constel/log /home/benchmark/working_dir/main:62148/constel/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "constraints_metric": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/constraints_metric/out1.log and /home/benchmark/working_dir/main:62148/constraints_metric/out1.log differ\r\nFiles /home/benchmark/working_dir/main:62147/constraints_metric/out2.log and /home/benchmark/working_dir/main:62148/constraints_metric/out2.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/constraints_metric/out1.log /home/benchmark/working_dir/main:62148/constraints_metric/out1.log\r\n14c14\r\n< core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/constraints_metric/out2.log /home/benchmark/working_dir/main:62148/constraints_metric/out2.log\r\n14c14\r\n< core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "contactMap": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/contactMap/log_lig and /home/benchmark/working_dir/main:62148/contactMap/log_lig differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/contactMap/log_lig /home/benchmark/working_dir/main:62148/contactMap/log_lig\r\n8,9c8,9\r\n< core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "continuous_sewing_hasher": { "log": "", "state": "passed" }, "control_flow_rs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_one.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_one.log differ\r\nFiles /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_three.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_three.log differ\r\nFiles /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_two.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_two.log differ\r\nFiles /home/benchmark/working_dir/main:62147/control_flow_rs/test_sequence_mover.log and /home/benchmark/working_dir/main:62148/control_flow_rs/test_sequence_mover.log differ\r\nFiles /home/benchmark/working_dir/main:62147/control_flow_rs/val_test.log and /home/benchmark/working_dir/main:62148/control_flow_rs/val_test.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_one.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_one.log\r\n14c14\r\n< core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_three.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_three.log\r\n14c14\r\n< core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_logic_two.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_logic_two.log\r\n14c14\r\n< core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/test_sequence_mover.log /home/benchmark/working_dir/main:62148/control_flow_rs/test_sequence_mover.log\r\n14c14\r\n< core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/control_flow_rs/val_test.log /home/benchmark/working_dir/main:62148/control_flow_rs/val_test.log\r\n14c14\r\n< core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "copy_rotamer_mover": { "log": "", "state": "passed" }, "count_cycpep_sequences": { "log": "", "state": "passed" }, "coupled_moves": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/coupled_moves/log_ligand and /home/benchmark/working_dir/main:62148/coupled_moves/log_ligand differ\r\nFiles /home/benchmark/working_dir/main:62147/coupled_moves/log_no_ligand and /home/benchmark/working_dir/main:62148/coupled_moves/log_no_ligand differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/coupled_moves/log_ligand /home/benchmark/working_dir/main:62148/coupled_moves/log_ligand\r\n20c20\r\n< core.import_pose.import_pose: File 'input/1ZK4_ligand.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1ZK4_ligand.pdb.gz' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/coupled_moves/log_no_ligand /home/benchmark/working_dir/main:62148/coupled_moves/log_no_ligand\r\n20c20\r\n< core.import_pose.import_pose: File 'input/1ZK4_no_ligand.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1ZK4_no_ligand.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "crankshaft_flip": { "log": "", "state": "passed" }, "create_clash-based_repack_shell": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/create_clash-based_repack_shell/log and /home/benchmark/working_dir/main:62148/create_clash-based_repack_shell/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/create_clash-based_repack_shell/log /home/benchmark/working_dir/main:62148/create_clash-based_repack_shell/log\r\n29c29\r\n< core.import_pose.import_pose: File '2ykl.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ykl.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "create_sequence_motif": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/create_sequence_motif/log and /home/benchmark/working_dir/main:62148/create_sequence_motif/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/create_sequence_motif/log /home/benchmark/working_dir/main:62148/create_sequence_motif/log\r\n14c14\r\n< core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "crossaln": { "log": "", "state": "passed" }, "crosslinkermover_1_4_bbmb_asymm": { "log": "", "state": "passed" }, "crosslinkermover_1_4_bbmb_c2_symmetry": { "log": "", "state": "passed" }, "crosslinkermover_1_4_bbmb_s2_symm": { "log": "", "state": "passed" }, "crosslinkermover_lanthionine": { "log": "", "state": "passed" }, "crosslinkermover_methyllanthionine": { "log": "", "state": "passed" }, "crosslinkermover_octahedral": { "log": "", "state": "passed" }, "crosslinkermover_octahedral_s2_symm": { "log": "", "state": "passed" }, "crosslinkermover_square_planar": { "log": "", "state": "passed" }, "crosslinkermover_square_planar_d2_symm": { "log": "", "state": "passed" }, "crosslinkermover_square_pyramidal": { "log": "", "state": "passed" }, "crosslinkermover_tetrahedral_metal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal/log and /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal/log /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "crosslinkermover_tetrahedral_metal_asp": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal_asp/log and /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal_asp/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/crosslinkermover_tetrahedral_metal_asp/log /home/benchmark/working_dir/main:62148/crosslinkermover_tetrahedral_metal_asp/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "crosslinkermover_tetrahedral_metal_c2_symmetry": { "log": "", "state": "passed" }, "crosslinkermover_tetrahedral_metal_d2_symmetry": { "log": "", "state": "passed" }, "crosslinkermover_thioether": { "log": "", "state": "passed" }, "crosslinkermover_tma": { "log": "", "state": "passed" }, "crosslinkermover_tma_symm": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_planar": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_planar_c3_symm": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_pyramidal": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_pyramidal_c3_symm": { "log": "", "state": "passed" }, "cs_rosetta_rna": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cs_rosetta_rna/log and /home/benchmark/working_dir/main:62148/cs_rosetta_rna/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cs_rosetta_rna/log /home/benchmark/working_dir/main:62148/cs_rosetta_rna/log\r\n105c105\r\n< core.import_pose.import_pose: File '1MIS_NMR.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1MIS_NMR.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cst_info": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cst_info/log_rosetta_scripts and /home/benchmark/working_dir/main:62148/cst_info/log_rosetta_scripts differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cst_info/log_rosetta_scripts /home/benchmark/working_dir/main:62148/cst_info/log_rosetta_scripts\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cstfile_to_theozyme_pdb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cstfile_to_theozyme_pdb/log and /home/benchmark/working_dir/main:62148/cstfile_to_theozyme_pdb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cstfile_to_theozyme_pdb/log /home/benchmark/working_dir/main:62148/cstfile_to_theozyme_pdb/log\r\n104c104\r\n< core.import_pose.import_pose: File 'inputs/dummy_align_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/dummy_align_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "custom_basetype_packer_palette": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/custom_basetype_packer_palette/log and /home/benchmark/working_dir/main:62148/custom_basetype_packer_palette/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/custom_basetype_packer_palette/log /home/benchmark/working_dir/main:62148/custom_basetype_packer_palette/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cyclization": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cyclization/log_cyclize and /home/benchmark/working_dir/main:62148/cyclization/log_cyclize differ\r\nFiles /home/benchmark/working_dir/main:62147/cyclization/log_cyclize_peptoid and /home/benchmark/working_dir/main:62148/cyclization/log_cyclize_peptoid differ\r\nFiles /home/benchmark/working_dir/main:62147/cyclization/log_relax and /home/benchmark/working_dir/main:62148/cyclization/log_relax differ\r\nFiles /home/benchmark/working_dir/main:62147/cyclization/log_relax_nocst and /home/benchmark/working_dir/main:62148/cyclization/log_relax_nocst differ\r\nFiles /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid and /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid differ\r\nFiles /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid_nocst and /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid_nocst differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_cyclize /home/benchmark/working_dir/main:62148/cyclization/log_cyclize\r\n8911c8911\r\n< core.import_pose.import_pose: File '1e68.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1e68.pdb' automatically determined to be of type PDB from contents.\r\n22692d22691\r\n< basic.io.database: Using 'ROSETTA/.database-binaries/macclangrelease/rotamer/shapovalov/StpDwn_0-0-0/' as a cache directory.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_cyclize_peptoid /home/benchmark/working_dir/main:62148/cyclization/log_cyclize_peptoid\r\n15c15\r\n< core.import_pose.import_pose: File 'peptoid.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'peptoid.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax /home/benchmark/working_dir/main:62148/cyclization/log_relax\r\n60c60\r\n< core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax_nocst /home/benchmark/working_dir/main:62148/cyclization/log_relax_nocst\r\n60c60\r\n< core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1e68_link.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid\r\n52c52\r\n< core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cyclization/log_relax_peptoid_nocst /home/benchmark/working_dir/main:62148/cyclization/log_relax_peptoid_nocst\r\n52c52\r\n< core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'peptoid_link.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cycpep_design_pipeline": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cycpep_design_pipeline/log1 and /home/benchmark/working_dir/main:62148/cycpep_design_pipeline/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_design_pipeline/log1 /home/benchmark/working_dir/main:62148/cycpep_design_pipeline/log1\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cycpep_rdkit_metric": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cycpep_rdkit_metric/log1 and /home/benchmark/working_dir/main:62148/cycpep_rdkit_metric/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_rdkit_metric/log1 /home/benchmark/working_dir/main:62148/cycpep_rdkit_metric/log1\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cycpep_rigid_body_permutation_mover": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cycpep_rigid_body_permutation_mover/out.log and /home/benchmark/working_dir/main:62148/cycpep_rigid_body_permutation_mover/out.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_rigid_body_permutation_mover/out.log /home/benchmark/working_dir/main:62148/cycpep_rigid_body_permutation_mover/out.log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n173c173\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n256c256\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n339c339\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n422c422\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n505c505\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n588c588\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n671c671\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n754c754\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n837c837\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n920c920\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1003c1003\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1086c1086\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1169c1169\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1252c1252\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1335c1335\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1418c1418\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1501c1501\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1584c1584\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1667c1667\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1750c1750\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1833c1833\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1916c1916\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n1999c1999\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2082c2082\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2165c2165\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2248c2248\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2331c2331\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2414c2414\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2497c2497\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2580c2580\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2663c2663\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2746c2746\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2829c2829\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2912c2912\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n2995c2995\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3078c3078\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3161c3161\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3244c3244\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3327c3327\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3410c3410\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3493c3493\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3576c3576\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3659c3659\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3742c3742\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3825c3825\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3908c3908\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n3991c3991\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4074c4074\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4157c4157\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4240c4240\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4323c4323\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4406c4406\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4489c4489\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4572c4572\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4655c4655\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4738c4738\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4821c4821\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4904c4904\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n4987c4987\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n5070c5070\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n5153c5153\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n5236c5236\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n5319c5319\r\n< core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/teststruct.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "cycpep_symmetry_filter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log1 and /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log2 and /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log1 /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log1\r\n39c39\r\n< core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB from contents.\r\n122c122\r\n< core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB from contents.\r\n173c173\r\n< core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/cycpep_symmetry_filter/log2 /home/benchmark/working_dir/main:62148/cycpep_symmetry_filter/log2\r\n39c39\r\n< core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/asymm.pdb' automatically determined to be of type PDB from contents.\r\n122c122\r\n< core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/c2_symm.pdb' automatically determined to be of type PDB from contents.\r\n167c167\r\n< core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/c2m_symm.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "d_workflow": { "log": "", "state": "passed" }, "database_jd2_compact_io": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/database_jd2_compact_io/test_output.log and /home/benchmark/working_dir/main:62148/database_jd2_compact_io/test_output.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/database_jd2_compact_io/test_output.log /home/benchmark/working_dir/main:62148/database_jd2_compact_io/test_output.log\r\n108c108\r\n< core.import_pose.import_pose: File '7cpa_7cpa_input.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '7cpa_7cpa_input.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "database_jd2_io": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/database_jd2_io/test_output.log and /home/benchmark/working_dir/main:62148/database_jd2_io/test_output.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/database_jd2_io/test_output.log /home/benchmark/working_dir/main:62148/database_jd2_io/test_output.log\r\n108c108\r\n< core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "database_md5": { "log": "", "state": "passed" }, "database_session_resource": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/database_session_resource/log and /home/benchmark/working_dir/main:62148/database_session_resource/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/database_session_resource/log /home/benchmark/working_dir/main:62148/database_session_resource/log\r\n9c9\r\n< core.import_pose.import_pose: File '1xu1FH_D.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1xu1FH_D.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ddG_ensemble": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ddG_ensemble/log and /home/benchmark/working_dir/main:62148/ddG_ensemble/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ddG_ensemble/log /home/benchmark/working_dir/main:62148/ddG_ensemble/log\r\n30c30\r\n< core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ddG_of_mutation": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ddG_of_mutation/log and /home/benchmark/working_dir/main:62148/ddG_of_mutation/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ddG_of_mutation/log /home/benchmark/working_dir/main:62148/ddG_of_mutation/log\r\n8899c8899\r\n< core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ci2.pdb' automatically determined to be of type PDB from contents.\r\n25040d25039\r\n< basic.io.database: Using 'ROSETTA/.database-binaries/macclangrelease/rotamer/shapovalov/StpDwn_0-0-0/' as a cache directory.\r\n", "state": "failed" }, "ddG_scan": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ddG_scan/log_db_output and /home/benchmark/working_dir/main:62148/ddG_scan/log_db_output differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ddG_scan/log_db_output /home/benchmark/working_dir/main:62148/ddG_scan/log_db_output\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1A22_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1A22_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ddG_sym": { "log": "", "state": "passed" }, "dehydro_aa_patch": { "log": "", "state": "passed" }, "density_denovo": { "log": "", "state": "passed" }, "density_refine": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/density_refine/log and /home/benchmark/working_dir/main:62148/density_refine/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/density_refine/log /home/benchmark/working_dir/main:62148/density_refine/log\r\n59c59\r\n< core.import_pose.import_pose: File 'inputs/1onc.model2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1onc.model2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "density_refine_symm": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/density_refine_symm/log and /home/benchmark/working_dir/main:62148/density_refine_symm/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/density_refine_symm/log /home/benchmark/working_dir/main:62148/density_refine_symm/log\r\n59c59\r\n< core.import_pose.import_pose: File 'inputs/1afo_INPUT.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1afo_INPUT.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "density_tools": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/density_tools/log and /home/benchmark/working_dir/main:62148/density_tools/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/density_tools/log /home/benchmark/working_dir/main:62148/density_tools/log\r\n149c149\r\n< core.import_pose.import_pose: File 'inputs/fragment.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/fragment.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "design_glycans": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/design_glycans/info.log and /home/benchmark/working_dir/main:62148/design_glycans/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_glycans/info.log /home/benchmark/working_dir/main:62148/design_glycans/info.log\r\n42c42\r\n< core.import_pose.import_pose: File 'input/N-linked_14-mer_glycan.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/N-linked_14-mer_glycan.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "design_w_custom_palette-CAAs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/design_w_custom_palette-CAAs/info.log and /home/benchmark/working_dir/main:62148/design_w_custom_palette-CAAs/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_w_custom_palette-CAAs/info.log /home/benchmark/working_dir/main:62148/design_w_custom_palette-CAAs/info.log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "design_w_custom_palette-NCAAs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/design_w_custom_palette-NCAAs/info.log and /home/benchmark/working_dir/main:62148/design_w_custom_palette-NCAAs/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_w_custom_palette-NCAAs/info.log /home/benchmark/working_dir/main:62148/design_w_custom_palette-NCAAs/info.log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/poly-Ala-helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "design_w_custom_palette-RNA": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/design_w_custom_palette-RNA/info.log and /home/benchmark/working_dir/main:62148/design_w_custom_palette-RNA/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/design_w_custom_palette-RNA/info.log /home/benchmark/working_dir/main:62148/design_w_custom_palette-RNA/info.log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/poly-A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/poly-A.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "dgdp_aio": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/dgdp_aio/run_cryo_dock_and_assemble_aio.log and /home/benchmark/working_dir/main:62148/dgdp_aio/run_cryo_dock_and_assemble_aio.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_aio/run_cryo_dock_and_assemble_aio.log /home/benchmark/working_dir/main:62148/dgdp_aio/run_cryo_dock_and_assemble_aio.log\r\n11c11\r\n< core.import_pose.import_pose: File 'inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n18c18\r\n< core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1469c1469\r\n< core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n2924c2924\r\n< core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "dgdp_script": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt differ\r\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt differ\r\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt differ\r\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt differ\r\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt differ\r\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt differ\r\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt differ\r\nFiles /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt and /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_refinement.log.filt\r\n11c11\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n15c15\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n18c18\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1469c1469\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_combine_search.log.filt\r\n10c10\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1468c1468\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n2923c2923\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_get_points.log.filt\r\n10c10\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1468c1468\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n2923c2923\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00001_00002.log.filt\r\n10c10\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1468c1468\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n2923c2923\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_inter_00003_00005.log.filt\r\n10c10\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1468c1468\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n2923c2923\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000001_0000050.log.filt\r\n10c10\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1468c1468\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n2923c2923\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/1E6V_A-1e6v_trim.mrc/log_out/001_3sqg_A_search_0000051_0000100.log.filt\r\n10c10\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n1468c1468\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\n2923c2923\r\n< core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '001_3sqg_A.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt /home/benchmark/working_dir/main:62148/dgdp_script/dgdp_out/docking_outputs/log_out/cluster_1E6V_A.log.filt\r\n9c9\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_1.pdb' automatically determined to be of type PDB from contents.\r\n13c13\r\n< core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/tests/integration/new/dgdp_script/inputs/1E6V_A_2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "dihedral_constraint_generator": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/dihedral_constraint_generator/info.log and /home/benchmark/working_dir/main:62148/dihedral_constraint_generator/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dihedral_constraint_generator/info.log /home/benchmark/working_dir/main:62148/dihedral_constraint_generator/info.log\r\n14c14\r\n< core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'obj01.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "discontinuous_sewing_hasher": { "log": "", "state": "passed" }, "distances": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/distances/log and /home/benchmark/working_dir/main:62148/distances/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/distances/log /home/benchmark/working_dir/main:62148/distances/log\r\n9c9\r\n< core.import_pose.import_pose: File 'inputs/1f4pA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1f4pA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "disulfidize_beta_cys": { "log": "", "state": "passed" }, "dna_interface_design": { "log": "", "state": "passed" }, "dock_glycans": { "log": "", "state": "passed" }, "dock_with_hotspot_place_simultaneously": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/dock_with_hotspot_place_simultaneously/log and /home/benchmark/working_dir/main:62148/dock_with_hotspot_place_simultaneously/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/dock_with_hotspot_place_simultaneously/log /home/benchmark/working_dir/main:62148/dock_with_hotspot_place_simultaneously/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_distance_constraints": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_distance_constraints/log and /home/benchmark/working_dir/main:62148/docking_distance_constraints/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_distance_constraints/log /home/benchmark/working_dir/main:62148/docking_distance_constraints/log\r\n48c48\r\n< core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_ensemble": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_ensemble/log and /home/benchmark/working_dir/main:62148/docking_ensemble/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_ensemble/log /home/benchmark/working_dir/main:62148/docking_ensemble/log\r\n47c47\r\n< core.import_pose.import_pose: File 'input/1acb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1acb.pdb' automatically determined to be of type PDB from contents.\r\n68c68\r\n< core.import_pose.import_pose: File 'input/receptor1.pdb.ppk' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/receptor1.pdb.ppk' automatically determined to be of type PDB from contents.\r\n73,82c73,82\r\n< core.import_pose.import_pose: File 'input/xxip01_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip02_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip03_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip04_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip05_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip06_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip07_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip08_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip09_0001.pdb.ppk' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/xxip10_0001.pdb.ppk' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/xxip01_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip02_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip03_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip04_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip05_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip06_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip07_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip08_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip09_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/xxip10_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_ensemble_prepack": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_ensemble_prepack/log and /home/benchmark/working_dir/main:62148/docking_ensemble_prepack/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_ensemble_prepack/log /home/benchmark/working_dir/main:62148/docking_ensemble_prepack/log\r\n36c36\r\n< core.import_pose.import_pose: File '1acb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1acb.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'receptor1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'receptor1.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'xxip01_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip01_0001.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'xxip02_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip02_0001.pdb' automatically determined to be of type PDB from contents.\r\n62c62\r\n< core.import_pose.import_pose: File 'xxip03_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip03_0001.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'xxip04_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip04_0001.pdb' automatically determined to be of type PDB from contents.\r\n66c66\r\n< core.import_pose.import_pose: File 'xxip05_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip05_0001.pdb' automatically determined to be of type PDB from contents.\r\n68c68\r\n< core.import_pose.import_pose: File 'xxip06_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip06_0001.pdb' automatically determined to be of type PDB from contents.\r\n70c70\r\n< core.import_pose.import_pose: File 'xxip07_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip07_0001.pdb' automatically determined to be of type PDB from contents.\r\n72c72\r\n< core.import_pose.import_pose: File 'xxip08_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip08_0001.pdb' automatically determined to be of type PDB from contents.\r\n74c74\r\n< core.import_pose.import_pose: File 'xxip09_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip09_0001.pdb' automatically determined to be of type PDB from contents.\r\n76c76\r\n< core.import_pose.import_pose: File 'xxip10_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xxip10_0001.pdb' automatically determined to be of type PDB from contents.\r\n83c83\r\n< core.import_pose.import_pose: File 'partner1_temp.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'partner1_temp.pdb' automatically determined to be of type PDB from contents.\r\n89c89\r\n< core.import_pose.import_pose: File 'partner2_temp.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'partner2_temp.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_full_protocol": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_full_protocol/log and /home/benchmark/working_dir/main:62148/docking_full_protocol/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_full_protocol/log /home/benchmark/working_dir/main:62148/docking_full_protocol/log\r\n47c47\r\n< core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_local_refine": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_local_refine/log and /home/benchmark/working_dir/main:62148/docking_local_refine/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_local_refine/log /home/benchmark/working_dir/main:62148/docking_local_refine/log\r\n47c47\r\n< core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_local_refine_min": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_local_refine_min/log and /home/benchmark/working_dir/main:62148/docking_local_refine_min/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_local_refine_min/log /home/benchmark/working_dir/main:62148/docking_local_refine_min/log\r\n45c45\r\n< core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_low_res": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_low_res/log and /home/benchmark/working_dir/main:62148/docking_low_res/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_low_res/log /home/benchmark/working_dir/main:62148/docking_low_res/log\r\n44c44\r\n< core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_prepack": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_prepack/log and /home/benchmark/working_dir/main:62148/docking_prepack/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_prepack/log /home/benchmark/working_dir/main:62148/docking_prepack/log\r\n36c36\r\n< core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "docking_site_constraints": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/docking_site_constraints/log and /home/benchmark/working_dir/main:62148/docking_site_constraints/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/docking_site_constraints/log /home/benchmark/working_dir/main:62148/docking_site_constraints/log\r\n47c47\r\n< core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "doug_dock_design_min_mod2_cal_cal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/doug_dock_design_min_mod2_cal_cal/log and /home/benchmark/working_dir/main:62148/doug_dock_design_min_mod2_cal_cal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/doug_dock_design_min_mod2_cal_cal/log /home/benchmark/working_dir/main:62148/doug_dock_design_min_mod2_cal_cal/log\r\n14c14\r\n< core.import_pose.import_pose: File '1NX1_clean_repack_min_all.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NX1_clean_repack_min_all.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "drrafter_error_estimation": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/drrafter_error_estimation/log and /home/benchmark/working_dir/main:62148/drrafter_error_estimation/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/drrafter_error_estimation/log /home/benchmark/working_dir/main:62148/drrafter_error_estimation/log\r\n8,10c8,10\r\n< core.import_pose.import_pose: File 'demo_run.out.1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'demo_run.out.2.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'demo_run.out.3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'demo_run.out.1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'demo_run.out.2.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'demo_run.out.3.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "drrafter_run": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/drrafter_run/log and /home/benchmark/working_dir/main:62148/drrafter_run/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/drrafter_run/log /home/benchmark/working_dir/main:62148/drrafter_run/log\r\n15,17c15,17\r\n< core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB from contents.\r\n57,59c57,59\r\n< core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'protein_fit_into_density.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'init_struct_demo_run.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "drrafter_setup": { "log": "", "state": "passed" }, "drrafter_setup_build_missing": { "log": "", "state": "passed" }, "drrafter_setup_protein_dock": { "log": "", "state": "passed" }, "drrafter_setup_real_test_H": { "log": "", "state": "passed" }, "drrafter_setup_real_test_H_no_init": { "log": "", "state": "passed" }, "drrafter_setup_ribosome_test": { "log": "", "state": "passed" }, "drrafter_setup_simple": { "log": "", "state": "passed" }, "duplicate_header_guards": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa_bin_analysis": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa_dihedral": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa_scorefile": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/energy_based_clustering_alpha_aa_scorefile/log and /home/benchmark/working_dir/main:62148/energy_based_clustering_alpha_aa_scorefile/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/energy_based_clustering_alpha_aa_scorefile/log /home/benchmark/working_dir/main:62148/energy_based_clustering_alpha_aa_scorefile/log\r\n19c19\r\n< core.import_pose.import_pose: File 'inputs/pose_01.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/pose_01.pdb' automatically determined to be of type PDB from contents.\r\n23c23\r\n< core.import_pose.import_pose: File 'inputs/pose_02.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/pose_02.pdb' automatically determined to be of type PDB from contents.\r\n27c27\r\n< core.import_pose.import_pose: File 'inputs/pose_03.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/pose_03.pdb' automatically determined to be of type PDB from contents.\r\n31c31\r\n< core.import_pose.import_pose: File 'inputs/pose_04.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/pose_04.pdb' automatically determined to be of type PDB from contents.\r\n35c35\r\n< core.import_pose.import_pose: File 'inputs/pose_05.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/pose_05.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "entropy_correction": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/entropy_correction/log_fa and /home/benchmark/working_dir/main:62148/entropy_correction/log_fa differ\r\nFiles /home/benchmark/working_dir/main:62147/entropy_correction/log_fa_dun10 and /home/benchmark/working_dir/main:62148/entropy_correction/log_fa_dun10 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/entropy_correction/log_fa /home/benchmark/working_dir/main:62148/entropy_correction/log_fa\r\n60c60\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/entropy_correction/log_fa_dun10 /home/benchmark/working_dir/main:62148/entropy_correction/log_fa_dun10\r\n35c35\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "enumerative_sampling": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/enumerative_sampling/log and /home/benchmark/working_dir/main:62148/enumerative_sampling/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enumerative_sampling/log /home/benchmark/working_dir/main:62148/enumerative_sampling/log\r\n37c37\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "enzdes": { "log": "", "state": "passed" }, "enzscore_filter_dimetal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal/log and /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal/log /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "enzscore_filter_dimetal_sym": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal_sym/log and /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal_sym/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_dimetal_sym/log /home/benchmark/working_dir/main:62148/enzscore_filter_dimetal_sym/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "enzscore_filter_ligand": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/enzscore_filter_ligand/log and /home/benchmark/working_dir/main:62148/enzscore_filter_ligand/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_ligand/log /home/benchmark/working_dir/main:62148/enzscore_filter_ligand/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1ney_invtree_unittest.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1ney_invtree_unittest.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "enzscore_filter_metal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/enzscore_filter_metal/log and /home/benchmark/working_dir/main:62148/enzscore_filter_metal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_metal/log /home/benchmark/working_dir/main:62148/enzscore_filter_metal/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "enzscore_filter_metal_sym": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/enzscore_filter_metal_sym/log and /home/benchmark/working_dir/main:62148/enzscore_filter_metal_sym/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/enzscore_filter_metal_sym/log /home/benchmark/working_dir/main:62148/enzscore_filter_metal_sym/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1cg2_A_relax.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "erraser_minimize": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/erraser_minimize/log and /home/benchmark/working_dir/main:62148/erraser_minimize/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/erraser_minimize/log /home/benchmark/working_dir/main:62148/erraser_minimize/log\r\n47c47\r\n< core.import_pose.import_pose: File '1Q9A_cut_ready_set.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1Q9A_cut_ready_set.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "esm_model_perplexity": { "log": "", "state": "passed" }, "evolution": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/evolution/log and /home/benchmark/working_dir/main:62148/evolution/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/evolution/log /home/benchmark/working_dir/main:62148/evolution/log\r\n35c35\r\n< core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1stn_short.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "exclusively_shared_jumps": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/exclusively_shared_jumps/log and /home/benchmark/working_dir/main:62148/exclusively_shared_jumps/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/exclusively_shared_jumps/log /home/benchmark/working_dir/main:62148/exclusively_shared_jumps/log\r\n11c11\r\n< core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../simple_metrics/2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "explicit_membrane": { "log": "", "state": "passed" }, "extract_atomtree_diffs": { "log": "", "state": "passed" }, "extract_pdbs": { "log": "", "state": "passed" }, "farfar_mrna": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/farfar_mrna/log and /home/benchmark/working_dir/main:62148/farfar_mrna/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/farfar_mrna/log /home/benchmark/working_dir/main:62148/farfar_mrna/log\r\n13c13\r\n< core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB from contents.\r\n46c46\r\n< core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cap.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "farnesyl": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/farnesyl/log and /home/benchmark/working_dir/main:62148/farnesyl/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/farnesyl/log /home/benchmark/working_dir/main:62148/farnesyl/log\r\n14c14\r\n< core.import_pose.import_pose: File '1kzo_mod.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1kzo_mod.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fast_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fast_relax/log and /home/benchmark/working_dir/main:62148/fast_relax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fast_relax/log /home/benchmark/working_dir/main:62148/fast_relax/log\r\n60c60\r\n< core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1029.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fast_relax_scripts": { "log": "", "state": "passed" }, "favor_coupling_tensor": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/favor_coupling_tensor/log and /home/benchmark/working_dir/main:62148/favor_coupling_tensor/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/favor_coupling_tensor/log /home/benchmark/working_dir/main:62148/favor_coupling_tensor/log\r\n14c14\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "favor_native_residue": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/favor_native_residue/log and /home/benchmark/working_dir/main:62148/favor_native_residue/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/favor_native_residue/log /home/benchmark/working_dir/main:62148/favor_native_residue/log\r\n39c39\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "features": { "log": "", "state": "passed" }, "features_database_schema": { "log": "", "state": "passed" }, "features_parallel": { "log": "", "state": "passed" }, "features_pdb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/features_pdb/log_db_output and /home/benchmark/working_dir/main:62148/features_pdb/log_db_output differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/features_pdb/log_db_output /home/benchmark/working_dir/main:62148/features_pdb/log_db_output\r\n14c14\r\n< core.import_pose.import_pose: File 'remtest_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'remtest_in.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "features_pdb_mpi": { "log": "", "state": "passed" }, "features_postgres": { "log": "", "state": "passed" }, "features_scientific_benchmark": { "log": "", "state": "passed" }, "fiber_diffraction": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_deriv and /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_deriv differ\r\nFiles /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_score_fa and /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_score_fa differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_deriv /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_deriv\r\n8c8\r\n< core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fiber_diffraction/log_fiber_score_fa /home/benchmark/working_dir/main:62148/fiber_diffraction/log_fiber_score_fa\r\n43c43\r\n< core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1IFP.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fiber_diffraction_fad": { "log": "", "state": "passed" }, "fit_helixparams": { "log": "", "state": "passed" }, "fit_helixparams_a3b": { "log": "", "state": "passed" }, "fit_helixparams_rms": { "log": "", "state": "passed" }, "fix_alignment_to_match_pdb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fix_alignment_to_match_pdb/log and /home/benchmark/working_dir/main:62148/fix_alignment_to_match_pdb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fix_alignment_to_match_pdb/log /home/benchmark/working_dir/main:62148/fix_alignment_to_match_pdb/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/2osoA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2osoA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fixbb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fixbb/log_cen and /home/benchmark/working_dir/main:62148/fixbb/log_cen differ\r\nFiles /home/benchmark/working_dir/main:62147/fixbb/log_fa and /home/benchmark/working_dir/main:62148/fixbb/log_fa differ\r\nFiles /home/benchmark/working_dir/main:62147/fixbb/log_fa_dun10 and /home/benchmark/working_dir/main:62148/fixbb/log_fa_dun10 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fixbb/log_cen /home/benchmark/working_dir/main:62148/fixbb/log_cen\r\n26c26\r\n< core.import_pose.import_pose: File '1l2y_centroid.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y_centroid.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fixbb/log_fa /home/benchmark/working_dir/main:62148/fixbb/log_fa\r\n60c60\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fixbb/log_fa_dun10 /home/benchmark/working_dir/main:62148/fixbb/log_fa_dun10\r\n35c35\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "flexpepdock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/flexpepdock/log and /home/benchmark/working_dir/main:62148/flexpepdock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/flexpepdock/log /home/benchmark/working_dir/main:62148/flexpepdock/log\r\n36c36\r\n< core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB from contents.\r\n42c42\r\n< core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1ER8.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'input/1ER8_rb1_tor10_5.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1ER8_rb1_tor10_5.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "flexpepdock_abinitio": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/flexpepdock_abinitio/log and /home/benchmark/working_dir/main:62148/flexpepdock_abinitio/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/flexpepdock_abinitio/log /home/benchmark/working_dir/main:62148/flexpepdock_abinitio/log\r\n31c31\r\n< core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.\r\n46c46\r\n< core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fold_and_dock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fold_and_dock/log and /home/benchmark/working_dir/main:62148/fold_and_dock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fold_and_dock/log /home/benchmark/working_dir/main:62148/fold_and_dock/log\r\n9073c9073\r\n< core.import_pose.import_pose: File 'input/2akf.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2akf.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fold_cst_new": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fold_cst_new/log and /home/benchmark/working_dir/main:62148/fold_cst_new/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fold_cst_new/log /home/benchmark/working_dir/main:62148/fold_cst_new/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n12c12\r\n< core.import_pose.import_pose: File 'inputs/truncate_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/truncate_native.pdb' automatically determined to be of type PDB from contents.\r\n190c190\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fold_from_loops": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fold_from_loops/log and /home/benchmark/working_dir/main:62148/fold_from_loops/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fold_from_loops/log /home/benchmark/working_dir/main:62148/fold_from_loops/log\r\n14c14\r\n< core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB from contents.\r\n138c138\r\n< core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/dimer.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fragment_picker": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fragment_picker/log_picking and /home/benchmark/working_dir/main:62148/fragment_picker/log_picking differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fragment_picker/log_picking /home/benchmark/working_dir/main:62148/fragment_picker/log_picking\r\n26c26\r\n< core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents.\r\n30c30\r\n< core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fragmentpicker_integration_demo": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fragmentpicker_integration_demo/log_picking and /home/benchmark/working_dir/main:62148/fragmentpicker_integration_demo/log_picking differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fragmentpicker_integration_demo/log_picking /home/benchmark/working_dir/main:62148/fragmentpicker_integration_demo/log_picking\r\n15c15\r\n< core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2jsvX.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "fuzzy": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/fuzzy/log and /home/benchmark/working_dir/main:62148/fuzzy/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/fuzzy/log /home/benchmark/working_dir/main:62148/fuzzy/log\r\n35c35\r\n< core.import_pose.import_pose: File '1bkd_design.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1bkd_design.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ga_ligand_dock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ga_ligand_dock/log and /home/benchmark/working_dir/main:62148/ga_ligand_dock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ga_ligand_dock/log /home/benchmark/working_dir/main:62148/ga_ligand_dock/log\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ga_ligand_dock_amino_acid": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ga_ligand_dock_amino_acid/log and /home/benchmark/working_dir/main:62148/ga_ligand_dock_amino_acid/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ga_ligand_dock_amino_acid/log /home/benchmark/working_dir/main:62148/ga_ligand_dock_amino_acid/log\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ga_ligand_dock_macrocycle": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ga_ligand_dock_macrocycle/log and /home/benchmark/working_dir/main:62148/ga_ligand_dock_macrocycle/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ga_ligand_dock_macrocycle/log /home/benchmark/working_dir/main:62148/ga_ligand_dock_macrocycle/log\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "gen_apo_grids": { "log": "", "state": "passed" }, "gen_lig_grids": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/gen_lig_grids/log and /home/benchmark/working_dir/main:62148/gen_lig_grids/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/gen_lig_grids/log /home/benchmark/working_dir/main:62148/gen_lig_grids/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/1a53_nohet_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1a53_nohet_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "generate_6Dloopclose": { "log": "", "state": "passed" }, "genkic_bin_perturbing": { "log": "", "state": "passed" }, "genkic_bin_sampling": { "log": "", "state": "passed" }, "genkic_bin_setting": { "log": "", "state": "passed" }, "genkic_dihedral_copying": { "log": "", "state": "passed" }, "genkic_lowmemory_mode": { "log": "", "state": "passed" }, "genkic_rama_filter": { "log": "", "state": "passed" }, "genkic_ramaprepro_sampling": { "log": "", "state": "passed" }, "genkic_sugars": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/genkic_sugars/log and /home/benchmark/working_dir/main:62148/genkic_sugars/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/genkic_sugars/log /home/benchmark/working_dir/main:62148/genkic_sugars/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents.\r\n171c171\r\n< core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents.\r\n228c228\r\n< core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents.\r\n286c286\r\n< core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents.\r\n344c344\r\n< core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/KIC_test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "geometric_solvation": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/geometric_solvation/log and /home/benchmark/working_dir/main:62148/geometric_solvation/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/geometric_solvation/log /home/benchmark/working_dir/main:62148/geometric_solvation/log\r\n63c63\r\n< core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB from contents.\r\n65c65\r\n< core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/1A6M.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycan_anomers": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycan_anomers/log and /home/benchmark/working_dir/main:62148/glycan_anomers/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_anomers/log /home/benchmark/working_dir/main:62148/glycan_anomers/log\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/anomers.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/anomers.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycan_clash_check": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycan_clash_check/log and /home/benchmark/working_dir/main:62148/glycan_clash_check/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_clash_check/log /home/benchmark/working_dir/main:62148/glycan_clash_check/log\r\n15c15\r\n< core.import_pose.import_pose: File 'test1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'test1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycan_refinment": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycan_refinment/log and /home/benchmark/working_dir/main:62148/glycan_refinment/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_refinment/log /home/benchmark/working_dir/main:62148/glycan_refinment/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/toy.pdb' automatically determined to be of type PDB from contents.\r\n381c381\r\n< core.import_pose.import_pose: File 'inputs/stretched.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/stretched.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycan_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycan_relax/log and /home/benchmark/working_dir/main:62148/glycan_relax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_relax/log /home/benchmark/working_dir/main:62148/glycan_relax/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/pareto_original.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/pareto_original.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycan_sequon_scanner": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycan_sequon_scanner/log and /home/benchmark/working_dir/main:62148/glycan_sequon_scanner/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_sequon_scanner/log /home/benchmark/working_dir/main:62148/glycan_sequon_scanner/log\r\n14c14\r\n< core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3nps.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycan_tree_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycan_tree_relax/hybrid_info.log and /home/benchmark/working_dir/main:62148/glycan_tree_relax/hybrid_info.log differ\r\nFiles /home/benchmark/working_dir/main:62147/glycan_tree_relax/refine_info.log and /home/benchmark/working_dir/main:62148/glycan_tree_relax/refine_info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_tree_relax/hybrid_info.log /home/benchmark/working_dir/main:62148/glycan_tree_relax/hybrid_info.log\r\n15c15\r\n< core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycan_tree_relax/refine_info.log /home/benchmark/working_dir/main:62148/glycan_tree_relax/refine_info.log\r\n15c15\r\n< core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycomutagenesis": { "log": "", "state": "passed" }, "glycopeptidedocking": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycopeptidedocking/info.log and /home/benchmark/working_dir/main:62148/glycopeptidedocking/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycopeptidedocking/info.log /home/benchmark/working_dir/main:62148/glycopeptidedocking/info.log\r\n39c39\r\n< core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.native.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.ppk.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/ppGalNAc-T2_UDP_glycopeptide.DSTTPAP.ppk.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycopeptidedocking_diglyco_long": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/glycopeptidedocking_diglyco_long/info.log and /home/benchmark/working_dir/main:62148/glycopeptidedocking_diglyco_long/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/glycopeptidedocking_diglyco_long/info.log /home/benchmark/working_dir/main:62148/glycopeptidedocking_diglyco_long/info.log\r\n39c39\r\n< core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/T12_CompletePeptideSubstrate_monoglycoCatC_noUDP_noMN_001_noGal_0001_glycosylated_alpha_glycosylated_alpha_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "glycosylation": { "log": "", "state": "passed" }, "grid_scores_features": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/grid_scores_features/log and /home/benchmark/working_dir/main:62148/grid_scores_features/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/grid_scores_features/log /home/benchmark/working_dir/main:62148/grid_scores_features/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hbnet": { "log": "", "state": "passed" }, "hbnet_asymm": { "log": "", "state": "passed" }, "hbnet_energy": { "log": "", "state": "passed" }, "hbnet_energy_rosettascripts_linear": { "log": "", "state": "passed" }, "hbnet_energy_symm": { "log": "", "state": "passed" }, "hbnet_use_input_rot": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hbnet_use_input_rot/info1.log and /home/benchmark/working_dir/main:62148/hbnet_use_input_rot/info1.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbnet_use_input_rot/info1.log /home/benchmark/working_dir/main:62148/hbnet_use_input_rot/info1.log\r\n14c14\r\n< core.import_pose.import_pose: File 'predesigned_bb_SS_0024_7_input_0001_0001_0005_0001_000000013.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'predesigned_bb_SS_0024_7_input_0001_0001_0005_0001_000000013.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hbonds": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hbonds/log_fa and /home/benchmark/working_dir/main:62148/hbonds/log_fa differ\r\nFiles /home/benchmark/working_dir/main:62147/hbonds/pack_log_fa and /home/benchmark/working_dir/main:62148/hbonds/pack_log_fa differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds/log_fa /home/benchmark/working_dir/main:62148/hbonds/log_fa\r\n8c8\r\n< core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds/pack_log_fa /home/benchmark/working_dir/main:62148/hbonds/pack_log_fa\r\n35c35\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hbonds_sp2": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hbonds_sp2/log_fa and /home/benchmark/working_dir/main:62148/hbonds_sp2/log_fa differ\r\nFiles /home/benchmark/working_dir/main:62147/hbonds_sp2/pack_log_fa and /home/benchmark/working_dir/main:62148/hbonds_sp2/pack_log_fa differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds_sp2/log_fa /home/benchmark/working_dir/main:62148/hbonds_sp2/log_fa\r\n11c11\r\n< core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbonds_sp2/pack_log_fa /home/benchmark/working_dir/main:62148/hbonds_sp2/pack_log_fa\r\n36c36\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hbondstoresidue_selector": { "log": "", "state": "passed" }, "hbs_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hbs_design/log and /home/benchmark/working_dir/main:62148/hbs_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hbs_design/log /home/benchmark/working_dir/main:62148/hbs_design/log\r\n14c14\r\n< core.import_pose.import_pose: File './input/mdm2_HBS_2_0010.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/mdm2_HBS_2_0010.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "header_using_check": { "log": "", "state": "passed" }, "helical_bundle": { "log": "", "state": "passed" }, "helical_bundle_nonideal": { "log": "", "state": "passed" }, "helical_bundle_predict": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/helical_bundle_predict/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict/log1\r\n50c50\r\n< core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "helical_bundle_predict_psipred": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred/log1\r\n53c53\r\n< core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "helical_bundle_predict_psipred_with_helix_globals": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred_with_helix_globals/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred_with_helix_globals/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_psipred_with_helix_globals/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_psipred_with_helix_globals/log1\r\n54c54\r\n< core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1b67.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "helical_bundle_predict_sequence": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/helical_bundle_predict_sequence/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_sequence/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_sequence/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_sequence/log1\r\n47c47\r\n< core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "helical_bundle_predict_skipping_residues": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/helical_bundle_predict_skipping_residues/log1 and /home/benchmark/working_dir/main:62148/helical_bundle_predict_skipping_residues/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/helical_bundle_predict_skipping_residues/log1 /home/benchmark/working_dir/main:62148/helical_bundle_predict_skipping_residues/log1\r\n50c50\r\n< core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2nd2_state1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "helix_from_sequence": { "log": "", "state": "passed" }, "hierarchical_clustering": { "log": "", "state": "passed" }, "homodimer_fnd_ref2015_memb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/homodimer_fnd_ref2015_memb/log and /home/benchmark/working_dir/main:62148/homodimer_fnd_ref2015_memb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/homodimer_fnd_ref2015_memb/log /home/benchmark/working_dir/main:62148/homodimer_fnd_ref2015_memb/log\r\n8c8\r\n< core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB from contents.\r\n338c338\r\n< core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/gpa2_embed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hotspot_graft": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hotspot_graft/log and /home/benchmark/working_dir/main:62148/hotspot_graft/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hotspot_graft/log /home/benchmark/working_dir/main:62148/hotspot_graft/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hotspot_hashing": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hotspot_hashing/log and /home/benchmark/working_dir/main:62148/hotspot_hashing/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hotspot_hashing/log /home/benchmark/working_dir/main:62148/hotspot_hashing/log\r\n30c30\r\n< core.import_pose.import_pose: File 'input/2dsrI.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2dsrI.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hotspot_stub_constraints": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hotspot_stub_constraints/log and /home/benchmark/working_dir/main:62148/hotspot_stub_constraints/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hotspot_stub_constraints/log /home/benchmark/working_dir/main:62148/hotspot_stub_constraints/log\r\n8c8\r\n< core.import_pose.import_pose: File '1a22_prot.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1a22_prot.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hshash_utils": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hshash_utils/log and /home/benchmark/working_dir/main:62148/hshash_utils/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hshash_utils/log /home/benchmark/working_dir/main:62148/hshash_utils/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/4akea.mrtm12.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4akea.mrtm12.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hts_io": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hts_io/log and /home/benchmark/working_dir/main:62148/hts_io/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hts_io/log /home/benchmark/working_dir/main:62148/hts_io/log\r\n17c17\r\n< core.import_pose.import_pose: File 'model1j36B_0001.pdb 000_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'model1j36B_0001.pdb 000_0001.pdb' automatically determined to be of type PDB from contents.\r\n197c197\r\n< core.import_pose.import_pose: File 'model1j36B_0001.pdb 001_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'model1j36B_0001.pdb 001_0001.pdb' automatically determined to be of type PDB from contents.\r\n324c324\r\n< core.import_pose.import_pose: File 'model1r42A_0001.pdb 000_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'model1r42A_0001.pdb 000_0001.pdb' automatically determined to be of type PDB from contents.\r\n455c455\r\n< core.import_pose.import_pose: File 'model1r42A_0001.pdb 001_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'model1r42A_0001.pdb 001_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hybridization": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hybridization/log and /home/benchmark/working_dir/main:62148/hybridization/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hybridization/log /home/benchmark/working_dir/main:62148/hybridization/log\r\n166c166\r\n< core.import_pose.import_pose: File 'inputs/model1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/model1.pdb' automatically determined to be of type PDB from contents.\r\n1008c1008\r\n< core.import_pose.import_pose: File 'inputs/model2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/model2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hydrate": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hydrate/log_repack and /home/benchmark/working_dir/main:62148/hydrate/log_repack differ\r\nFiles /home/benchmark/working_dir/main:62147/hydrate/log_rotamer and /home/benchmark/working_dir/main:62148/hydrate/log_rotamer differ\r\nFiles /home/benchmark/working_dir/main:62147/hydrate/log_score and /home/benchmark/working_dir/main:62148/hydrate/log_score differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate/log_repack /home/benchmark/working_dir/main:62148/hydrate/log_repack\r\n30c30\r\n< core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate/log_rotamer /home/benchmark/working_dir/main:62148/hydrate/log_rotamer\r\n30c30\r\n< core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate/log_score /home/benchmark/working_dir/main:62148/hydrate/log_score\r\n30c30\r\n< core.import_pose.import_pose: File '1BRS_wet.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1BRS_wet.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "hydrate_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/hydrate_relax/log_relax and /home/benchmark/working_dir/main:62148/hydrate_relax/log_relax differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/hydrate_relax/log_relax /home/benchmark/working_dir/main:62148/hydrate_relax/log_relax\r\n54c54\r\n< core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1BRS_dry.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "identify_cdr_clusters": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/identify_cdr_clusters/log and /home/benchmark/working_dir/main:62148/identify_cdr_clusters/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/identify_cdr_clusters/log /home/benchmark/working_dir/main:62148/identify_cdr_clusters/log\r\n14c14\r\n< core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2j88_renum.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ig_dump": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ig_dump/log and /home/benchmark/working_dir/main:62148/ig_dump/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ig_dump/log /home/benchmark/working_dir/main:62148/ig_dump/log\r\n30c30\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "include_cc_check": { "log": "", "state": "passed" }, "interaction_graph_summary_metric": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/interaction_graph_summary_metric/log and /home/benchmark/working_dir/main:62148/interaction_graph_summary_metric/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/interaction_graph_summary_metric/log /home/benchmark/working_dir/main:62148/interaction_graph_summary_metric/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "interface_energy": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/interface_energy/log and /home/benchmark/working_dir/main:62148/interface_energy/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/interface_energy/log /home/benchmark/working_dir/main:62148/interface_energy/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/4lgs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4lgs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "inv_kin_lig_loop_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_hbond and /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_hbond differ\r\nFiles /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_template and /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_template differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_hbond /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_hbond\r\n21c21\r\n< core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/inv_kin_lig_loop_design/log_template /home/benchmark/working_dir/main:62148/inv_kin_lig_loop_design/log_template\r\n21c21\r\n< core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB from contents.\r\n74c74\r\n< core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bCD_UR1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "inverse_rotamer_remodel": { "log": "", "state": "passed" }, "iphold": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/iphold/log and /home/benchmark/working_dir/main:62148/iphold/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/iphold/log /home/benchmark/working_dir/main:62148/iphold/log\r\n18c18\r\n< core.import_pose.import_pose: File 'input/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "jd2test_PDBIO": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log1 and /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log2 and /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log2 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log3 and /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log3 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log1 /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log1\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents.\r\n110c110\r\n< core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents.\r\n133c133\r\n< core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log2 /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log2\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents.\r\n86c86\r\n< core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents.\r\n109c109\r\n< core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents.\r\n132c132\r\n< core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents.\r\n149c149\r\n< core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBIO/log3 /home/benchmark/working_dir/main:62148/jd2test_PDBIO/log3\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents.\r\n110c110\r\n< core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb' automatically determined to be of type PDB from contents.\r\n133c133\r\n< core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "jd2test_PDBin_mmCIFout": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log1 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log2 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log2 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log3 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log3 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log1 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log1\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n110c110\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n133c133\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log2 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log2\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n86c86\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n109c109\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n132c132\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n149c149\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout/log3 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout/log3\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n110c110\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n133c133\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "jd2test_PDBin_mmCIFout_extra_data_separate": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log1 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log2 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log2 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log3 and /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log3 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log1 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log1\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n110c110\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n133c133\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log2 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log2\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n86c86\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n109c109\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n132c132\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n149c149\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_PDBin_mmCIFout_extra_data_separate/log3 /home/benchmark/working_dir/main:62148/jd2test_PDBin_mmCIFout_extra_data_separate/log3\r\n39c39\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n110c110\r\n< core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1EM7.pdb.gz' automatically determined to be of type PDB from contents.\r\n133c133\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1NLO.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "jd2test_mmCIFIO": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log1 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log2 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log1 /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log1\r\n39c39\r\n< core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents.\r\n60c60\r\n< core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents.\r\n102c102\r\n< core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFIO/log2 /home/benchmark/working_dir/main:62148/jd2test_mmCIFIO/log2\r\n17c17\r\n< core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents.\r\n58c58\r\n< core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents.\r\n84c84\r\n< core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents.\r\n", "state": "failed" }, "jd2test_mmCIFin_PDBout": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log1 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log2 and /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log1 /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log1\r\n39c39\r\n< core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents.\r\n60c60\r\n< core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents.\r\n102c102\r\n< core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jd2test_mmCIFin_PDBout/log2 /home/benchmark/working_dir/main:62148/jd2test_mmCIFin_PDBout/log2\r\n17c17\r\n< core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1ubq.cif' automatically determined to be of type mmCIF from contents.\r\n58c58\r\n< core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1em7.cif' automatically determined to be of type mmCIF from contents.\r\n84c84\r\n< core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1qwe.cif' automatically determined to be of type mmCIF from contents.\r\n", "state": "failed" }, "job_definition_script_vars": { "log": "", "state": "passed" }, "jrelax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/jrelax/log and /home/benchmark/working_dir/main:62148/jrelax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jrelax/log /home/benchmark/working_dir/main:62148/jrelax/log\r\n50c50\r\n< core.import_pose.import_pose: File 'input/short.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/short.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "jscore": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/jscore/log and /home/benchmark/working_dir/main:62148/jscore/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/jscore/log /home/benchmark/working_dir/main:62148/jscore/log\r\n31c31\r\n< core.import_pose.import_pose: File 'input/1dikA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1dikA.pdb' automatically determined to be of type PDB from contents.\r\n35c35\r\n< core.import_pose.import_pose: File 'input/1ezaA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1ezaA.pdb' automatically determined to be of type PDB from contents.\r\n37c37\r\n< core.import_pose.import_pose: File 'input/1ggoA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1ggoA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "kinemage_grid_output": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/kinemage_grid_output/log and /home/benchmark/working_dir/main:62148/kinemage_grid_output/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/kinemage_grid_output/log /home/benchmark/working_dir/main:62148/kinemage_grid_output/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n150c150\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "kinematic_looprelax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/kinematic_looprelax/log and /home/benchmark/working_dir/main:62148/kinematic_looprelax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/kinematic_looprelax/log /home/benchmark/working_dir/main:62148/kinematic_looprelax/log\r\n43c43\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n66c66\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ld_converter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ld_converter/log and /home/benchmark/working_dir/main:62148/ld_converter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ld_converter/log /home/benchmark/working_dir/main:62148/ld_converter/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/AAdAdA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/AAdAdA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_database_io": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_database_io/log and /home/benchmark/working_dir/main:62148/ligand_database_io/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_database_io/log /home/benchmark/working_dir/main:62148/ligand_database_io/log\r\n24c24\r\n< core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents.\r\n172c172\r\n< core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_dock_7cpa": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_dock_7cpa/log and /home/benchmark/working_dir/main:62148/ligand_dock_7cpa/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_7cpa/log /home/benchmark/working_dir/main:62148/ligand_dock_7cpa/log\r\n10c10\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents.\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_dock_cholesterol": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_dock_cholesterol/log and /home/benchmark/working_dir/main:62148/ligand_dock_cholesterol/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_cholesterol/log /home/benchmark/working_dir/main:62148/ligand_dock_cholesterol/log\r\n11c11\r\n< core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents.\r\n67c67\r\n< core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents.\r\n116c116\r\n< core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2rh1_C_413.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_dock_ensemble": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_dock_ensemble/log and /home/benchmark/working_dir/main:62148/ligand_dock_ensemble/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_ensemble/log /home/benchmark/working_dir/main:62148/ligand_dock_ensemble/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/girk_ligands.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/girk_ligands.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_dock_grid": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_dock_grid/log and /home/benchmark/working_dir/main:62148/ligand_dock_grid/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_grid/log /home/benchmark/working_dir/main:62148/ligand_dock_grid/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n126c126\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_dock_script": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_dock_script/log and /home/benchmark/working_dir/main:62148/ligand_dock_script/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_dock_script/log /home/benchmark/working_dir/main:62148/ligand_dock_script/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents.\r\n162c162\r\n< core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_motif_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_motif_design/design.log and /home/benchmark/working_dir/main:62148/ligand_motif_design/design.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_motif_design/design.log /home/benchmark/working_dir/main:62148/ligand_motif_design/design.log\r\n14c14\r\n< core.import_pose.import_pose: File '2p09.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2p09.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_motif_discovery": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_motif_discovery/log and /home/benchmark/working_dir/main:62148/ligand_motif_discovery/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_motif_discovery/log /home/benchmark/working_dir/main:62148/ligand_motif_discovery/log\r\n16c16\r\n< core.import_pose.import_pose: File '4s0v_receptor_only.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4s0v_receptor_only.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_motif_identification": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_motif_identification/log and /home/benchmark/working_dir/main:62148/ligand_motif_identification/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_motif_identification/log /home/benchmark/working_dir/main:62148/ligand_motif_identification/log\r\n27c27\r\n< core.import_pose.import_pose: File '4s0v.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4s0v.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ligand_water_docking": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ligand_water_docking/ligand_centric_log and /home/benchmark/working_dir/main:62148/ligand_water_docking/ligand_centric_log differ\r\nFiles /home/benchmark/working_dir/main:62147/ligand_water_docking/protein_centric_log and /home/benchmark/working_dir/main:62148/ligand_water_docking/protein_centric_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_water_docking/ligand_centric_log /home/benchmark/working_dir/main:62148/ligand_water_docking/ligand_centric_log\r\n11c11\r\n< core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB from contents.\r\n85c85\r\n< core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents.\r\n147c147\r\n< core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ligand_water_docking/protein_centric_log /home/benchmark/working_dir/main:62148/ligand_water_docking/protein_centric_log\r\n11c11\r\n< core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_input.pdb' automatically determined to be of type PDB from contents.\r\n85c85\r\n< core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents.\r\n147c147\r\n< core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1HXW_native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "longest_continuous_polar_segment_filter": { "log": "", "state": "passed" }, "loop_creation": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/loop_creation/log and /home/benchmark/working_dir/main:62148/loop_creation/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_creation/log /home/benchmark/working_dir/main:62148/loop_creation/log\r\n14c14\r\n< core.import_pose.import_pose: File 'tree_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'tree_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "loop_grower_N_term_symm": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/loop_grower_N_term_symm/log and /home/benchmark/working_dir/main:62148/loop_grower_N_term_symm/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_grower_N_term_symm/log /home/benchmark/working_dir/main:62148/loop_grower_N_term_symm/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1rpb_symm_INPUT.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1rpb_symm_INPUT.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "loop_hash": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/loop_hash/log_createdb and /home/benchmark/working_dir/main:62148/loop_hash/log_createdb differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_hash/log_createdb /home/benchmark/working_dir/main:62148/loop_hash/log_createdb\r\n20c20\r\n< core.import_pose.import_pose: File 'S_00001_0000001_0_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'S_00001_0000001_0_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "loop_modeling": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/loop_modeling/log and /home/benchmark/working_dir/main:62148/loop_modeling/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/loop_modeling/log /home/benchmark/working_dir/main:62148/loop_modeling/log\r\n59c59\r\n< core.import_pose.import_pose: File 'inputs/4fxn.start_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "make_and_perturb_bundle_multirepeat": { "log": "", "state": "passed" }, "make_exemplar": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/make_exemplar/log and /home/benchmark/working_dir/main:62148/make_exemplar/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/make_exemplar/log /home/benchmark/working_dir/main:62148/make_exemplar/log\r\n15c15\r\n< core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "make_mainchain_potential": { "log": "", "state": "passed" }, "make_mainchain_potential_symm": { "log": "", "state": "passed" }, "make_mainchain_potential_symm_preproline": { "log": "", "state": "passed" }, "make_rot_lib": { "log": "", "state": "passed" }, "make_symmdef_file": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/make_symmdef_file/log and /home/benchmark/working_dir/main:62148/make_symmdef_file/log differ\r\nFiles /home/benchmark/working_dir/main:62147/make_symmdef_file/nc_log and /home/benchmark/working_dir/main:62148/make_symmdef_file/nc_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/make_symmdef_file/log /home/benchmark/working_dir/main:62148/make_symmdef_file/log\r\n13c13\r\n< core.import_pose.import_pose: File 'inputs/1xu1FH_D.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1xu1FH_D.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/make_symmdef_file/nc_log /home/benchmark/working_dir/main:62148/make_symmdef_file/nc_log\r\n22c22\r\n< core.import_pose.import_pose: File 'inputs/3UKM.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/3UKM.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "match_1c2t": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/match_1c2t/1c2t.log and /home/benchmark/working_dir/main:62148/match_1c2t/1c2t.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_1c2t/1c2t.log /home/benchmark/working_dir/main:62148/match_1c2t/1c2t.log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/1c2t/1c2t_9_nohet.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1c2t/1c2t_9_nohet.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "match_1n9l": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/match_1n9l/1n9l.log and /home/benchmark/working_dir/main:62148/match_1n9l/1n9l.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_1n9l/1n9l.log /home/benchmark/working_dir/main:62148/match_1n9l/1n9l.log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/1n9l_CHbN/1n9l_11.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1n9l_CHbN/1n9l_11.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "match_6cpa": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/match_6cpa/6cpa.log and /home/benchmark/working_dir/main:62148/match_6cpa/6cpa.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_6cpa/6cpa.log /home/benchmark/working_dir/main:62148/match_6cpa/6cpa.log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "match_xml": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/match_xml/log and /home/benchmark/working_dir/main:62148/match_xml/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/match_xml/log /home/benchmark/working_dir/main:62148/match_xml/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/6cpa/6cpa_9_nohet.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "measure_lcaa_radii": { "log": "", "state": "passed" }, "membrane_abinitio": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/membrane_abinitio/log and /home/benchmark/working_dir/main:62148/membrane_abinitio/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_abinitio/log /home/benchmark/working_dir/main:62148/membrane_abinitio/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n12c12\r\n< core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "membrane_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/membrane_relax/log and /home/benchmark/working_dir/main:62148/membrane_relax/log differ\r\nFiles /home/benchmark/working_dir/main:62147/membrane_relax/Menv_smooth.log and /home/benchmark/working_dir/main:62148/membrane_relax/Menv_smooth.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax/log /home/benchmark/working_dir/main:62148/membrane_relax/log\r\n70c70\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n75c75\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n80c80\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax/Menv_smooth.log /home/benchmark/working_dir/main:62148/membrane_relax/Menv_smooth.log\r\n78c78\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n83c83\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n88c88\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "membrane_relax_hbond": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/membrane_relax_hbond/log and /home/benchmark/working_dir/main:62148/membrane_relax_hbond/log differ\r\nFiles /home/benchmark/working_dir/main:62147/membrane_relax_hbond/Menv_smooth.log and /home/benchmark/working_dir/main:62148/membrane_relax_hbond/Menv_smooth.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax_hbond/log /home/benchmark/working_dir/main:62148/membrane_relax_hbond/log\r\n70c70\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n75c75\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n80c80\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/membrane_relax_hbond/Menv_smooth.log /home/benchmark/working_dir/main:62148/membrane_relax_hbond/Menv_smooth.log\r\n78c78\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n83c83\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n88c88\r\n< core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/BRD4.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "metal_setup": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/metal_setup/log and /home/benchmark/working_dir/main:62148/metal_setup/log differ\r\nFiles /home/benchmark/working_dir/main:62147/metal_setup/log_resfile and /home/benchmark/working_dir/main:62148/metal_setup/log_resfile differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metal_setup/log /home/benchmark/working_dir/main:62148/metal_setup/log\r\n36c36\r\n< core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1m8r_fragment.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metal_setup/log_resfile /home/benchmark/working_dir/main:62148/metal_setup/log_resfile\r\n36c36\r\n< core.import_pose.import_pose: File '1l8c.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l8c.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "metalloprotein_abrelax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/metalloprotein_abrelax/log and /home/benchmark/working_dir/main:62148/metalloprotein_abrelax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metalloprotein_abrelax/log /home/benchmark/working_dir/main:62148/metalloprotein_abrelax/log\r\n8c8\r\n< core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB from contents.\r\n13c13\r\n< core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './input/1dsvA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "metalloprotein_broker": { "log": "", "state": "passed" }, "metropolis_hastings": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/metropolis_hastings/log_rosetta_scripts and /home/benchmark/working_dir/main:62148/metropolis_hastings/log_rosetta_scripts differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/metropolis_hastings/log_rosetta_scripts /home/benchmark/working_dir/main:62148/metropolis_hastings/log_rosetta_scripts\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1MFG.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mf_fixbb_des": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mf_fixbb_des/log and /home/benchmark/working_dir/main:62148/mf_fixbb_des/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mf_fixbb_des/log /home/benchmark/working_dir/main:62148/mf_fixbb_des/log\r\n15c15\r\n< core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents.\r\n99c99\r\n< core.import_pose.import_pose: File './inputs/mut_ENLYFQS_0003.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/mut_ENLYFQS_0003.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mf_fixbb_sc": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mf_fixbb_sc/log and /home/benchmark/working_dir/main:62148/mf_fixbb_sc/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mf_fixbb_sc/log /home/benchmark/working_dir/main:62148/mf_fixbb_sc/log\r\n15c15\r\n< core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents.\r\n77c77\r\n< core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mf_flexbb_sc": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mf_flexbb_sc/log and /home/benchmark/working_dir/main:62148/mf_flexbb_sc/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mf_flexbb_sc/log /home/benchmark/working_dir/main:62148/mf_flexbb_sc/log\r\n15c15\r\n< core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/1LVB_1.pdb' automatically determined to be of type PDB from contents.\r\n77,81c77,81\r\n< core.import_pose.import_pose: File './inputs/mut_ANLYFQG_0004.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/mut_EELYGQS_0001.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/mut_EQLIGQS_0005.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/mut_EWLYLQG_0003.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File './inputs/mut_TILYGQS_0005.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/mut_ANLYFQG_0004.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/mut_EELYGQS_0001.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/mut_EQLIGQS_0005.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/mut_EWLYLQG_0003.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File './inputs/mut_TILYGQS_0005.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mg_modeler": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mg_modeler/log and /home/benchmark/working_dir/main:62148/mg_modeler/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mg_modeler/log /home/benchmark/working_dir/main:62148/mg_modeler/log\r\n8c8\r\n< core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mg_modeler_lores": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mg_modeler_lores/log and /home/benchmark/working_dir/main:62148/mg_modeler_lores/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mg_modeler_lores/log /home/benchmark/working_dir/main:62148/mg_modeler_lores/log\r\n8c8\r\n< core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './/arich_2r8s_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mhc_epitope": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mhc_epitope/log and /home/benchmark/working_dir/main:62148/mhc_epitope/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mhc_epitope/log /home/benchmark/working_dir/main:62148/mhc_epitope/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mhc_epitope_nmer_preload": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mhc_epitope_nmer_preload/log and /home/benchmark/working_dir/main:62148/mhc_epitope_nmer_preload/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mhc_epitope_nmer_preload/log /home/benchmark/working_dir/main:62148/mhc_epitope_nmer_preload/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1ysb_monomer_relaxed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "min_pack_min": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/min_pack_min/min_pack_min.log and /home/benchmark/working_dir/main:62148/min_pack_min/min_pack_min.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/min_pack_min/min_pack_min.log /home/benchmark/working_dir/main:62148/min_pack_min/min_pack_min.log\r\n60c60\r\n< core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "minimize_6Dloopclose": { "log": "", "state": "passed" }, "minimize_with_elec_dens": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/minimize_with_elec_dens/log and /home/benchmark/working_dir/main:62148/minimize_with_elec_dens/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/minimize_with_elec_dens/log /home/benchmark/working_dir/main:62148/minimize_with_elec_dens/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1xu1FH_D_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1xu1FH_D_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mirror_symm": { "log": "", "state": "passed" }, "mixed_monte_carlo": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mixed_monte_carlo/log_basic and /home/benchmark/working_dir/main:62148/mixed_monte_carlo/log_basic differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mixed_monte_carlo/log_basic /home/benchmark/working_dir/main:62148/mixed_monte_carlo/log_basic\r\n16c16\r\n< core.import_pose.import_pose: File 'input/complex.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/complex.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mm_params": { "log": "", "state": "passed" }, "mmtfIO_score_test": { "log": "", "state": "passed" }, "molfile_to_params": { "log": "", "state": "passed" }, "molfile_to_params_polymer": { "log": "", "state": "passed" }, "motif_dna_packer_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/motif_dna_packer_design/design.log and /home/benchmark/working_dir/main:62148/motif_dna_packer_design/design.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/motif_dna_packer_design/design.log /home/benchmark/working_dir/main:62148/motif_dna_packer_design/design.log\r\n30c30\r\n< core.import_pose.import_pose: File 'anii.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'anii.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "motif_extraction": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/motif_extraction/log and /home/benchmark/working_dir/main:62148/motif_extraction/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/motif_extraction/log /home/benchmark/working_dir/main:62148/motif_extraction/log\r\n10c10\r\n< core.import_pose.import_pose: File './pdb_set/1a2pFH_B_rot.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdb_set/1a2pFH_B_rot.pdb' automatically determined to be of type PDB from contents.\r\n32c32\r\n< core.import_pose.import_pose: File './pdb_set/1a2yFH_A_rot.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './pdb_set/1a2yFH_A_rot.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "motif_score_filter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/motif_score_filter/log and /home/benchmark/working_dir/main:62148/motif_score_filter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/motif_score_filter/log /home/benchmark/working_dir/main:62148/motif_score_filter/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_dock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_dock/log and /home/benchmark/working_dir/main:62148/mp_dock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock/log /home/benchmark/working_dir/main:62148/mp_dock/log\r\n41c41\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_dock_ensemble": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_dock_ensemble/log and /home/benchmark/working_dir/main:62148/mp_dock_ensemble/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock_ensemble/log /home/benchmark/working_dir/main:62148/mp_dock_ensemble/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'inputs/2k9j_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2k9j_AB.pdb' automatically determined to be of type PDB from contents.\r\n80c80\r\n< core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents.\r\n89,90c89,90\r\n< core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'inputs/2k9j_native_AB.pdb' automatically determined to be of type PDB from contents.\r\n268c268\r\n< core.import_pose.import_pose: File 'inputs/br_receptor_0001.pdb.ppk' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/br_receptor_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n273c273\r\n< core.import_pose.import_pose: File 'inputs/br_ligand_0001.pdb.ppk' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/br_ligand_0001.pdb.ppk' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_dock_prepack": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_dock_prepack/log and /home/benchmark/working_dir/main:62148/mp_dock_prepack/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock_prepack/log /home/benchmark/working_dir/main:62148/mp_dock_prepack/log\r\n41c41\r\n< core.import_pose.import_pose: File 'input/2knc_tr.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2knc_tr.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_dock_setup": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_dock_setup/log and /home/benchmark/working_dir/main:62148/mp_dock_setup/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_dock_setup/log /home/benchmark/working_dir/main:62148/mp_dock_setup/log\r\n10c10\r\n< core.import_pose.import_pose: File 'inputs/1AFO_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_A.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'inputs/1AFO_B.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_B.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_domain_assembly": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_domain_assembly/log and /home/benchmark/working_dir/main:62148/mp_domain_assembly/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_domain_assembly/log /home/benchmark/working_dir/main:62148/mp_domain_assembly/log\r\n12c12\r\n< core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_sol.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_sol.pdb' automatically determined to be of type PDB from contents.\r\n16c16\r\n< core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_tm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/5XSY_B_tr_opt_tm.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_domain_assembly_FtsQ": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_domain_assembly_FtsQ/log and /home/benchmark/working_dir/main:62148/mp_domain_assembly_FtsQ/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_domain_assembly_FtsQ/log /home/benchmark/working_dir/main:62148/mp_domain_assembly_FtsQ/log\r\n12,13c12,13\r\n< core.import_pose.import_pose: File 'inputs/FtsQ_tmd_oriented_cleaned_0001.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'inputs/6h9o_onesubunit_0999_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/FtsQ_tmd_oriented_cleaned_0001.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'inputs/6h9o_onesubunit_0999_A.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_f19_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_f19_relax/log and /home/benchmark/working_dir/main:62148/mp_f19_relax/log differ\r\nFiles /home/benchmark/working_dir/main:62147/mp_f19_relax/.test_got_timeout_kill.log and /home/benchmark/working_dir/main:62148/mp_f19_relax/.test_got_timeout_kill.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_f19_relax/log /home/benchmark/working_dir/main:62148/mp_f19_relax/log\r\n14c14\r\n< core.import_pose.import_pose: File 'decoy.54.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'decoy.54.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_f19_relax/.test_got_timeout_kill.log /home/benchmark/working_dir/main:62148/mp_f19_relax/.test_got_timeout_kill.log\r\n1c1\r\n< *** Test mp_f19_relax exceeded the timeout=480 and will be killed! [2025-02-08 04:38:34.145466]\r\n---\r\n> *** Test mp_f19_relax exceeded the timeout=480 and will be killed! [2025-03-18 19:44:05.321178]\r\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n", "state": "script failed" }, "mp_find_interface": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_find_interface/log and /home/benchmark/working_dir/main:62148/mp_find_interface/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_find_interface/log /home/benchmark/working_dir/main:62148/mp_find_interface/log\r\n11c11\r\n< core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents.\r\n16c16\r\n< core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents.\r\n275c275\r\n< core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents.\r\n379c379\r\n< core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents.\r\n28164c28164\r\n< core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/mpdocking_setup_out.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_interface_statistics": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_interface_statistics/log and /home/benchmark/working_dir/main:62148/mp_interface_statistics/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_interface_statistics/log /home/benchmark/working_dir/main:62148/mp_interface_statistics/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_ligand_interface": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_ligand_interface/log and /home/benchmark/working_dir/main:62148/mp_ligand_interface/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_ligand_interface/log /home/benchmark/working_dir/main:62148/mp_ligand_interface/log\r\n14c14\r\n< core.import_pose.import_pose: File '4dkl_A_relax.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4dkl_A_relax.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_loadtime": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_loadtime/log and /home/benchmark/working_dir/main:62148/mp_loadtime/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_loadtime/log /home/benchmark/working_dir/main:62148/mp_loadtime/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1C3W_TR_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1C3W_TR_A.pdb' automatically determined to be of type PDB from contents.\r\n276c276\r\n< core.import_pose.import_pose: File 'inputs/1AFO_tr.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_tr.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_mutate_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_mutate_relax/log and /home/benchmark/working_dir/main:62148/mp_mutate_relax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_mutate_relax/log /home/benchmark/working_dir/main:62148/mp_mutate_relax/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n18c18\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n115c115\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n197c197\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_mutate_repack": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_mutate_repack/log and /home/benchmark/working_dir/main:62148/mp_mutate_repack/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_mutate_repack/log /home/benchmark/working_dir/main:62148/mp_mutate_repack/log\r\n12c12\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n16c16\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n136c136\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_quick_relax": { "log": "", "state": "passed" }, "mp_quick_relax_ref2015_memb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_quick_relax_ref2015_memb/run_log and /home/benchmark/working_dir/main:62148/mp_quick_relax_ref2015_memb/run_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_quick_relax_ref2015_memb/run_log /home/benchmark/working_dir/main:62148/mp_quick_relax_ref2015_memb/run_log\r\n15c15\r\n< core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_range_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_range_relax/log and /home/benchmark/working_dir/main:62148/mp_range_relax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_range_relax/log /home/benchmark/working_dir/main:62148/mp_range_relax/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/1AFO__opm.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO__opm.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_relax/log and /home/benchmark/working_dir/main:62148/mp_relax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_relax/log /home/benchmark/working_dir/main:62148/mp_relax/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1afo_tr_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1afo_tr_native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_relax_w_ligand": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_relax_w_ligand/log and /home/benchmark/working_dir/main:62148/mp_relax_w_ligand/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_relax_w_ligand/log /home/benchmark/working_dir/main:62148/mp_relax_w_ligand/log\r\n15c15\r\n< core.import_pose.import_pose: File '3PXO_A_tr.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3PXO_A_tr.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_score_jd2": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_score_jd2/log and /home/benchmark/working_dir/main:62148/mp_score_jd2/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_score_jd2/log /home/benchmark/working_dir/main:62148/mp_score_jd2/log\r\n34c34\r\n< core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2zup_native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_span_ang_ref2015_memb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_span_ang_ref2015_memb/run_log and /home/benchmark/working_dir/main:62148/mp_span_ang_ref2015_memb/run_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_span_ang_ref2015_memb/run_log /home/benchmark/working_dir/main:62148/mp_span_ang_ref2015_memb/run_log\r\n15c15\r\n< core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_span_from_pdb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_span_from_pdb/log and /home/benchmark/working_dir/main:62148/mp_span_from_pdb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_span_from_pdb/log /home/benchmark/working_dir/main:62148/mp_span_from_pdb/log\r\n9c9\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_symdock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_symdock/log and /home/benchmark/working_dir/main:62148/mp_symdock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_symdock/log /home/benchmark/working_dir/main:62148/mp_symdock/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_symmetry_load": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_symmetry_load/log and /home/benchmark/working_dir/main:62148/mp_symmetry_load/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_symmetry_load/log /home/benchmark/working_dir/main:62148/mp_symmetry_load/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1afo_tr_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_transform": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_transform/log and /home/benchmark/working_dir/main:62148/mp_transform/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_transform/log /home/benchmark/working_dir/main:62148/mp_transform/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_transform_optimize": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_transform_optimize/log and /home/benchmark/working_dir/main:62148/mp_transform_optimize/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_transform_optimize/log /home/benchmark/working_dir/main:62148/mp_transform_optimize/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB_before_out.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mp_vis_emb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mp_vis_emb/log and /home/benchmark/working_dir/main:62148/mp_vis_emb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mp_vis_emb/log /home/benchmark/working_dir/main:62148/mp_vis_emb/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/3EFF_TR.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/3EFF_TR.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mpi_multistate_design": { "log": "", "state": "passed" }, "mpi_simple_cycpep_predict": { "log": "", "state": "passed" }, "mpi_simple_cycpep_predict_4level": { "log": "", "state": "passed" }, "mpi_simple_cycpep_predict_computing_pnear_to_all": { "log": "", "state": "passed" }, "mpil_find_pore_ahelical": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mpil_find_pore_ahelical/log and /home/benchmark/working_dir/main:62148/mpil_find_pore_ahelical/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mpil_find_pore_ahelical/log /home/benchmark/working_dir/main:62148/mpil_find_pore_ahelical/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mpil_find_pore_bbarrel": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mpil_find_pore_bbarrel/log and /home/benchmark/working_dir/main:62148/mpil_find_pore_bbarrel/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mpil_find_pore_bbarrel/log /home/benchmark/working_dir/main:62148/mpil_find_pore_bbarrel/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1KMO_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1KMO_native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mpil_load_implicit_lipids": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mpil_load_implicit_lipids/log and /home/benchmark/working_dir/main:62148/mpil_load_implicit_lipids/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mpil_load_implicit_lipids/log /home/benchmark/working_dir/main:62148/mpil_load_implicit_lipids/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1U19_tr_ignorechain.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "mr_protocols": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mr_protocols/log and /home/benchmark/working_dir/main:62148/mr_protocols/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mr_protocols/log /home/benchmark/working_dir/main:62148/mr_protocols/log\r\n72c72\r\n< core.import_pose.import_pose: File 'inputs/2qo4.PHASER.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/2qo4.PHASER.1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "multistage_rosetta_scripts": { "log": "", "state": "passed" }, "multistage_rosetta_scripts_clustering": { "log": "", "state": "passed" }, "multithreaded_fastdesign": { "log": "", "state": "passed" }, "multithreaded_fixbb": { "log": "", "state": "passed" }, "multithreaded_interaction_graph_accuracy": { "log": "", "state": "passed" }, "multithreaded_interaction_graph_accuracy_symm": { "log": "", "state": "passed" }, "multithreaded_packrotamersmover": { "log": "", "state": "passed" }, "mutate": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/mutate/log and /home/benchmark/working_dir/main:62148/mutate/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/mutate/log /home/benchmark/working_dir/main:62148/mutate/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ncaa_fixbb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ncaa_fixbb/log and /home/benchmark/working_dir/main:62148/ncaa_fixbb/log differ\r\nFiles /home/benchmark/working_dir/main:62147/ncaa_fixbb/log_tcre and /home/benchmark/working_dir/main:62148/ncaa_fixbb/log_tcre differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ncaa_fixbb/log /home/benchmark/working_dir/main:62148/ncaa_fixbb/log\r\n27c27\r\n< core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ncaa_fixbb/log_tcre /home/benchmark/working_dir/main:62148/ncaa_fixbb/log_tcre\r\n29c29\r\n< core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y_hybrid.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ncbb_packer_palette": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ncbb_packer_palette/log_cycpep_beta_aramid and /home/benchmark/working_dir/main:62148/ncbb_packer_palette/log_cycpep_beta_aramid differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ncbb_packer_palette/log_cycpep_beta_aramid /home/benchmark/working_dir/main:62148/ncbb_packer_palette/log_cycpep_beta_aramid\r\n35c35\r\n< core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents.\r\n101c101\r\n< core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents.\r\n127c127\r\n< core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents.\r\n153c153\r\n< core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'cycpep_pre_stage_3.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "netcharge_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/netcharge_design/log and /home/benchmark/working_dir/main:62148/netcharge_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/netcharge_design/log /home/benchmark/working_dir/main:62148/netcharge_design/log\r\n37c37\r\n< core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "netcharge_design_symm": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/netcharge_design_symm/log and /home/benchmark/working_dir/main:62148/netcharge_design_symm/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/netcharge_design_symm/log /home/benchmark/working_dir/main:62148/netcharge_design_symm/log\r\n37c37\r\n< core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/5IZS_trimmed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "next_generation_KIC": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/next_generation_KIC/log and /home/benchmark/working_dir/main:62148/next_generation_KIC/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/next_generation_KIC/log /home/benchmark/working_dir/main:62148/next_generation_KIC/log\r\n43c43\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n66c66\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "noe_assignment": { "log": "", "state": "passed" }, "non-canonical_connectivities": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/non-canonical_connectivities/log and /home/benchmark/working_dir/main:62148/non-canonical_connectivities/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/non-canonical_connectivities/log /home/benchmark/working_dir/main:62148/non-canonical_connectivities/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/lactam.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/lactam.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "nonideal_rtmin": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack differ\r\nFiles /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack_cart and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack_cart differ\r\nFiles /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin differ\r\nFiles /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin_cart and /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin_cart differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack\r\n14c14\r\n< core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_minpack_cart /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_minpack_cart\r\n14c14\r\n< core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin\r\n14c14\r\n< core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/nonideal_rtmin/log_rtmin_cart /home/benchmark/working_dir/main:62148/nonideal_rtmin/log_rtmin_cart\r\n14c14\r\n< core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2IGD.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "nucleobase_sample_around": { "log": "", "state": "passed" }, "number_of_residuetypes": { "log": "", "state": "passed" }, "oligourea_design": { "log": "", "state": "passed" }, "oligourea_predict": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/oligourea_predict/log1 and /home/benchmark/working_dir/main:62148/oligourea_predict/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oligourea_predict/log1 /home/benchmark/working_dir/main:62148/oligourea_predict/log1\r\n40c40\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "oop_create": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/oop_create/log and /home/benchmark/working_dir/main:62148/oop_create/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oop_create/log /home/benchmark/working_dir/main:62148/oop_create/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/ala4_pep.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/ala4_pep.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "oop_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/oop_design/log and /home/benchmark/working_dir/main:62148/oop_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oop_design/log /home/benchmark/working_dir/main:62148/oop_design/log\r\n14c14\r\n< core.import_pose.import_pose: File './inputs/mdm2_oopAAAA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './inputs/mdm2_oopAAAA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "oop_dock_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/oop_dock_design/log and /home/benchmark/working_dir/main:62148/oop_dock_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/oop_dock_design/log /home/benchmark/working_dir/main:62148/oop_dock_design/log\r\n27c27\r\n< core.import_pose.import_pose: File 'input/mdm2_oop.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/mdm2_oop.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "orbitals": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/orbitals/log and /home/benchmark/working_dir/main:62148/orbitals/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/orbitals/log /home/benchmark/working_dir/main:62148/orbitals/log\r\n35c35\r\n< core.import_pose.import_pose: File 'input/1thfD.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1thfD.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "output_schema": { "log": "", "state": "passed" }, "pH_mode": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pH_mode/log and /home/benchmark/working_dir/main:62148/pH_mode/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pH_mode/log /home/benchmark/working_dir/main:62148/pH_mode/log\r\n14c14\r\n< core.import_pose.import_pose: File '2OVO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2OVO.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pepspec": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pepspec/log and /home/benchmark/working_dir/main:62148/pepspec/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pepspec/log /home/benchmark/working_dir/main:62148/pepspec/log\r\n28c28\r\n< core.import_pose.import_pose: File 'input/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pepspec_anchor_dock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pepspec_anchor_dock/log and /home/benchmark/working_dir/main:62148/pepspec_anchor_dock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pepspec_anchor_dock/log /home/benchmark/working_dir/main:62148/pepspec_anchor_dock/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB from contents.\r\n44c44\r\n< core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB from contents.\r\n61c61\r\n< core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1CKA.nopep.pdb' automatically determined to be of type PDB from contents.\r\n78c78\r\n< core.import_pose.import_pose: File 'input/1CKA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1CKA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "peptiderive": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/peptiderive/log_peptiderive and /home/benchmark/working_dir/main:62148/peptiderive/log_peptiderive differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/peptiderive/log_peptiderive /home/benchmark/working_dir/main:62148/peptiderive/log_peptiderive\r\n36c36\r\n< core.import_pose.import_pose: File '3gxu_remixed_min.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3gxu_remixed_min.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "per_residue_energies": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/per_residue_energies/log and /home/benchmark/working_dir/main:62148/per_residue_energies/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/per_residue_energies/log /home/benchmark/working_dir/main:62148/per_residue_energies/log\r\n29c29\r\n< core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "per_residue_sc_sasa": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/per_residue_sc_sasa/log and /home/benchmark/working_dir/main:62148/per_residue_sc_sasa/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/per_residue_sc_sasa/log /home/benchmark/working_dir/main:62148/per_residue_sc_sasa/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1AFO_AB.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "per_residue_solvent_exposure": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/per_residue_solvent_exposure/log and /home/benchmark/working_dir/main:62148/per_residue_solvent_exposure/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/per_residue_solvent_exposure/log /home/benchmark/working_dir/main:62148/per_residue_solvent_exposure/log\r\n9c9\r\n< core.import_pose.import_pose: File '1dwr_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1dwr_A.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pertmin": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pertmin/log and /home/benchmark/working_dir/main:62148/pertmin/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pertmin/log /home/benchmark/working_dir/main:62148/pertmin/log\r\n14c14\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n101c101\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n110c110\r\n< core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "perturb_helical_bundle": { "log": "", "state": "passed" }, "perturb_helical_bundle_copying_pitch": { "log": "", "state": "passed" }, "perturb_helical_bundle_epsilon": { "log": "", "state": "passed" }, "perturb_helical_bundle_setting": { "log": "", "state": "passed" }, "perturb_helical_bundle_z_offset": { "log": "", "state": "passed" }, "phiselector": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/phiselector/log and /home/benchmark/working_dir/main:62148/phiselector/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/phiselector/log /home/benchmark/working_dir/main:62148/phiselector/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "phosphonate": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/phosphonate/log_ACE_k26 and /home/benchmark/working_dir/main:62148/phosphonate/log_ACE_k26 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/phosphonate/log_ACE_k26 /home/benchmark/working_dir/main:62148/phosphonate/log_ACE_k26\r\n37c37\r\n< core.import_pose.import_pose: File 'input/2xhm_AnCE_k26_clean.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2xhm_AnCE_k26_clean.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "phosphorylation": { "log": "", "state": "passed" }, "place_simultaneously": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/place_simultaneously/log and /home/benchmark/working_dir/main:62148/place_simultaneously/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/place_simultaneously/log /home/benchmark/working_dir/main:62148/place_simultaneously/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pmut_scan": { "log": "", "state": "passed" }, "pna": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pna/log and /home/benchmark/working_dir/main:62148/pna/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pna/log /home/benchmark/working_dir/main:62148/pna/log\r\n60c60\r\n< core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB from contents.\r\n1090c1090\r\n< core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1nr8_mod_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pna_base_pairs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pna_base_pairs/log and /home/benchmark/working_dir/main:62148/pna_base_pairs/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pna_base_pairs/log /home/benchmark/working_dir/main:62148/pna_base_pairs/log\r\n14c14\r\n< core.import_pose.import_pose: File 'RAD.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'RAD.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pocket_measure": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pocket_measure/log and /home/benchmark/working_dir/main:62148/pocket_measure/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pocket_measure/log /home/benchmark/working_dir/main:62148/pocket_measure/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pocket_relax": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pocket_relax/log and /home/benchmark/working_dir/main:62148/pocket_relax/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pocket_relax/log /home/benchmark/working_dir/main:62148/pocket_relax/log\r\n63c63\r\n< core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1r2d_closed.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pocket_suggest_targets": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pocket_suggest_targets/log and /home/benchmark/working_dir/main:62148/pocket_suggest_targets/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pocket_suggest_targets/log /home/benchmark/working_dir/main:62148/pocket_suggest_targets/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/2xa0_complex.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/2xa0_complex.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "polyaramid_test_trivial": { "log": "", "state": "passed" }, "pose_sewing": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pose_sewing/makesegmentfile_log and /home/benchmark/working_dir/main:62148/pose_sewing/makesegmentfile_log differ\r\nFiles /home/benchmark/working_dir/main:62147/pose_sewing/pose_sewing_log and /home/benchmark/working_dir/main:62148/pose_sewing/pose_sewing_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pose_sewing/makesegmentfile_log /home/benchmark/working_dir/main:62148/pose_sewing/makesegmentfile_log\r\n8c8\r\n< core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'test_pdb.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pose_sewing/pose_sewing_log /home/benchmark/working_dir/main:62148/pose_sewing/pose_sewing_log\r\n352c352\r\n< core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_1.pdb' automatically determined to be of type PDB from contents.\r\n363c363\r\n< core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'sewanything_test_segments/test_pdb_2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "posttranslationalmod_io": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/posttranslationalmod_io/log and /home/benchmark/working_dir/main:62148/posttranslationalmod_io/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/posttranslationalmod_io/log /home/benchmark/working_dir/main:62148/posttranslationalmod_io/log\r\n25c25\r\n< core.import_pose.import_pose: File '0AZ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '0AZ.pdb' automatically determined to be of type PDB from contents.\r\n102c102\r\n< core.import_pose.import_pose: File 'ALY.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ALY.pdb' automatically determined to be of type PDB from contents.\r\n138c138\r\n< core.import_pose.import_pose: File 'HYP.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'HYP.pdb' automatically determined to be of type PDB from contents.\r\n174c174\r\n< core.import_pose.import_pose: File 'M3L.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'M3L.pdb' automatically determined to be of type PDB from contents.\r\n210c210\r\n< core.import_pose.import_pose: File 'MLY.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'MLY.pdb' automatically determined to be of type PDB from contents.\r\n246c246\r\n< core.import_pose.import_pose: File 'MLZ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'MLZ.pdb' automatically determined to be of type PDB from contents.\r\n282c282\r\n< core.import_pose.import_pose: File 'PTR.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'PTR.pdb' automatically determined to be of type PDB from contents.\r\n318c318\r\n< core.import_pose.import_pose: File 'SCY.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'SCY.pdb' automatically determined to be of type PDB from contents.\r\n354c354\r\n< core.import_pose.import_pose: File 'SEP.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'SEP.pdb' automatically determined to be of type PDB from contents.\r\n390c390\r\n< core.import_pose.import_pose: File 'TPO.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TPO.pdb' automatically determined to be of type PDB from contents.\r\n426c426\r\n< core.import_pose.import_pose: File 'TYI.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TYI.pdb' automatically determined to be of type PDB from contents.\r\n462c462\r\n< core.import_pose.import_pose: File 'TYS.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TYS.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppi_v3_suiteA": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppi_v3_suiteA/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteA/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteA/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteA/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppi_v3_suiteB": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppi_v3_suiteB/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteB/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteB/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteB/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppi_v3_suiteC": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppi_v3_suiteC/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteC/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteC/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteC/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppi_v3_suiteD": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppi_v3_suiteD/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteD/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteD/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteD/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppi_v3_suiteE": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppi_v3_suiteE/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteE/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteE/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteE/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppi_v3_suiteF": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppi_v3_suiteF/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteF/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteF/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteF/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppi_v3_suiteG": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppi_v3_suiteG/log and /home/benchmark/working_dir/main:62148/ppi_v3_suiteG/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppi_v3_suiteG/log /home/benchmark/working_dir/main:62148/ppi_v3_suiteG/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "ppk": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ppk/log and /home/benchmark/working_dir/main:62148/ppk/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ppk/log /home/benchmark/working_dir/main:62148/ppk/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "proteinMPNN_model_perplexity": { "log": "", "state": "passed" }, "protocol_metric": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/protocol_metric/log and /home/benchmark/working_dir/main:62148/protocol_metric/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/protocol_metric/log /home/benchmark/working_dir/main:62148/protocol_metric/log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n100c100\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pwsho": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pwsho/log and /home/benchmark/working_dir/main:62148/pwsho/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pwsho/log /home/benchmark/working_dir/main:62148/pwsho/log\r\n62c62\r\n< core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4GQ4.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "pymol_cif": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/pymol_cif/log and /home/benchmark/working_dir/main:62148/pymol_cif/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/pymol_cif/log /home/benchmark/working_dir/main:62148/pymol_cif/log\r\n38c38\r\n< core.import_pose.import_pose: File '1qys_pymol.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1qys_pymol.cif' automatically determined to be of type mmCIF from contents.\r\n44c44\r\n< core.import_pose.import_pose: File '1qys_pymol_mod.cif' automatically determined to be of type mmCIF\r\n---\r\n> core.import_pose.import_pose: File '1qys_pymol_mod.cif' automatically determined to be of type mmCIF from contents.\r\n", "state": "failed" }, "r_pdb2top": { "log": "", "state": "passed" }, "r_rmsf": { "log": "", "state": "passed" }, "ralford_dump_rotamers": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/ralford_dump_rotamers/log and /home/benchmark/working_dir/main:62148/ralford_dump_rotamers/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/ralford_dump_rotamers/log /home/benchmark/working_dir/main:62148/ralford_dump_rotamers/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/GGQGG_linear.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/GGQGG_linear.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rama_mutation_selector": { "log": "", "state": "passed" }, "range_relax_w_cst": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/range_relax_w_cst/log and /home/benchmark/working_dir/main:62148/range_relax_w_cst/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/range_relax_w_cst/log /home/benchmark/working_dir/main:62148/range_relax_w_cst/log\r\n30c30\r\n< core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB from contents.\r\n36c36\r\n< core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1JKN_A.pdb' automatically determined to be of type PDB from contents.\r\n42c42\r\n< core.import_pose.import_pose: File 'inputs/1F3Y_A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1F3Y_A.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rb_recces": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rb_recces/log and /home/benchmark/working_dir/main:62148/rb_recces/log differ\r\nFiles /home/benchmark/working_dir/main:62147/rb_recces/log2 and /home/benchmark/working_dir/main:62148/rb_recces/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rb_recces/log /home/benchmark/working_dir/main:62148/rb_recces/log\r\n8c8\r\n< core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rb_recces/log2 /home/benchmark/working_dir/main:62148/rb_recces/log2\r\n8c8\r\n< core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'fiber_CG.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rdkit_metrics": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rdkit_metrics/log and /home/benchmark/working_dir/main:62148/rdkit_metrics/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rdkit_metrics/log /home/benchmark/working_dir/main:62148/rdkit_metrics/log\r\n14c14\r\n< core.import_pose.import_pose: File '7cpa_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "read_polymeric_components": { "log": "", "state": "passed" }, "readin_dna_rna_protein": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/log and /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/log differ\r\nFiles /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/noHOH.log and /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/noHOH.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/log /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/log\r\n63c63\r\n< core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB from contents.\r\n192c192\r\n< core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4HKQ.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/readin_dna_rna_protein/noHOH.log /home/benchmark/working_dir/main:62148/readin_dna_rna_protein/noHOH.log\r\n63c63\r\n< core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB from contents.\r\n192c192\r\n< core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4HKQ_noHOH.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "real_virt_mover": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/real_virt_mover/info.log and /home/benchmark/working_dir/main:62148/real_virt_mover/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/real_virt_mover/info.log /home/benchmark/working_dir/main:62148/real_virt_mover/info.log\r\n14c14\r\n< core.import_pose.import_pose: File '9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "recces_turner": { "log": "", "state": "passed" }, "recon_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/recon_design/log and /home/benchmark/working_dir/main:62148/recon_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/recon_design/log /home/benchmark/working_dir/main:62148/recon_design/log\r\n15c15\r\n< core.import_pose.import_pose: File '1avz.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1avz.pdb.gz' automatically determined to be of type PDB from contents.\r\n18c18\r\n< core.import_pose.import_pose: File '1m27.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1m27.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "recon_design_mpi": { "log": "", "state": "passed" }, "referencepose_mutateresidue": { "log": "", "state": "passed" }, "relax_w_allatom_cst": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log and /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log differ\r\nFiles /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log_native and /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log_native differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log\r\n66c66\r\n< core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/relax_w_allatom_cst/log_native /home/benchmark/working_dir/main:62148/relax_w_allatom_cst/log_native\r\n87c87\r\n< core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB from contents.\r\n493c493\r\n< core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1a19_trunc.pdb' automatically determined to be of type PDB from contents.\r\n497c497\r\n< core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1a19.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "remodel": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/remodel/log1 and /home/benchmark/working_dir/main:62148/remodel/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/remodel/log2 and /home/benchmark/working_dir/main:62148/remodel/log2 differ\r\nFiles /home/benchmark/working_dir/main:62147/remodel/log3 and /home/benchmark/working_dir/main:62148/remodel/log3 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel/log1 /home/benchmark/working_dir/main:62148/remodel/log1\r\n37c37\r\n< core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel/log2 /home/benchmark/working_dir/main:62148/remodel/log2\r\n37c37\r\n< core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel/log3 /home/benchmark/working_dir/main:62148/remodel/log3\r\n37c37\r\n< core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents.\r\n201c201\r\n< core.import_pose.import_pose: File '2ci2.insert.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ci2.insert.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "remodel_disulfides": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/remodel_disulfides/log2 and /home/benchmark/working_dir/main:62148/remodel_disulfides/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_disulfides/log2 /home/benchmark/working_dir/main:62148/remodel_disulfides/log2\r\n37c37\r\n< core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2ci2.renumbered.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "remodel_disulfides_rosettascripts": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/remodel_disulfides_rosettascripts/log and /home/benchmark/working_dir/main:62148/remodel_disulfides_rosettascripts/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_disulfides_rosettascripts/log /home/benchmark/working_dir/main:62148/remodel_disulfides_rosettascripts/log\r\n32c32\r\n< core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "remodel_helical_repeat": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log1 and /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log2 and /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log1 /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log1\r\n14c14\r\n< core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents.\r\n844c844\r\n< core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/remodel_helical_repeat/log2 /home/benchmark/working_dir/main:62148/remodel_helical_repeat/log2\r\n14c14\r\n< core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents.\r\n844c844\r\n< core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'dummy1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "repack_with_elec_dens": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/repack_with_elec_dens/log and /home/benchmark/working_dir/main:62148/repack_with_elec_dens/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/repack_with_elec_dens/log /home/benchmark/working_dir/main:62148/repack_with_elec_dens/log\r\n14c14\r\n< core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/make_symmdef_file/inputs/1xu1FH_D.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "repeat_propagate": { "log": "", "state": "passed" }, "repeat_propagate_v2": { "log": "", "state": "passed" }, "repeat_propagate_v3": { "log": "", "state": "passed" }, "repeat_relax": { "log": "", "state": "passed" }, "replica_docking": { "log": "", "state": "passed" }, "report_hbonds_for_plugin": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/report_hbonds_for_plugin/report_hbonds_for_plugin.log and /home/benchmark/working_dir/main:62148/report_hbonds_for_plugin/report_hbonds_for_plugin.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/report_hbonds_for_plugin/report_hbonds_for_plugin.log /home/benchmark/working_dir/main:62148/report_hbonds_for_plugin/report_hbonds_for_plugin.log\r\n19c19\r\n< core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1brs.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "res_lipo_ref2015_memb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/res_lipo_ref2015_memb/run_log and /home/benchmark/working_dir/main:62148/res_lipo_ref2015_memb/run_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/res_lipo_ref2015_memb/run_log /home/benchmark/working_dir/main:62148/res_lipo_ref2015_memb/run_log\r\n15c15\r\n< core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/gpa2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "residue_energy_breakdown": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log and /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log differ\r\nFiles /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_cst and /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_cst differ\r\nFiles /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_perres and /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_perres differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log\r\n29c29\r\n< core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_cst /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_cst\r\n29c29\r\n< core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/residue_energy_breakdown/log_perres /home/benchmark/working_dir/main:62148/residue_energy_breakdown/log_perres\r\n29c29\r\n< core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/S_1TR1A_1_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "resource_database_locator": { "log": "", "state": "passed" }, "restype_converter": { "log": "", "state": "passed" }, "rings": { "log": "", "state": "passed" }, "rna_add_WC_stats": { "log": "", "state": "passed" }, "rna_assemble": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_assemble/log and /home/benchmark/working_dir/main:62148/rna_assemble/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_assemble/log /home/benchmark/working_dir/main:62148/rna_assemble/log\r\n82c82\r\n< core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB from contents.\r\n88c88\r\n< core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB from contents.\r\n109c109\r\n< core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1y26_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_cluster": { "log": "", "state": "passed" }, "rna_denovo": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo/log and /home/benchmark/working_dir/main:62148/rna_denovo/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo/log /home/benchmark/working_dir/main:62148/rna_denovo/log\r\n15c15\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n21c21\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n23c23\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_RNP_low_res": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_RNP_low_res/log and /home/benchmark/working_dir/main:62148/rna_denovo_RNP_low_res/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_RNP_low_res/log /home/benchmark/working_dir/main:62148/rna_denovo_RNP_low_res/log\r\n14c14\r\n< core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents.\r\n16,17c16,17\r\n< core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents.\r\n62,63c62,63\r\n< core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'helix_2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_RNP_refine_native": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_RNP_refine_native/log and /home/benchmark/working_dir/main:62148/rna_denovo_RNP_refine_native/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_RNP_refine_native/log /home/benchmark/working_dir/main:62148/rna_denovo_RNP_refine_native/log\r\n15c15\r\n< core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File 'center_0_r10_complex.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'center_0_r10_complex.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'MS2_protein.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_base_pair_constraints": { "log": "", "state": "passed" }, "rna_denovo_base_pair_setup": { "log": "", "state": "passed" }, "rna_denovo_bps": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_bps/log and /home/benchmark/working_dir/main:62148/rna_denovo_bps/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_bps/log /home/benchmark/working_dir/main:62148/rna_denovo_bps/log\r\n16c16\r\n< core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents.\r\n23c23\r\n< core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_bps_fixed_ends": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_bps_fixed_ends/log and /home/benchmark/working_dir/main:62148/rna_denovo_bps_fixed_ends/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_bps_fixed_ends/log /home/benchmark/working_dir/main:62148/rna_denovo_bps_fixed_ends/log\r\n14c14\r\n< core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n18,19c18,19\r\n< core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n24c24\r\n< core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n46c46\r\n< core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'srp_domainIV_fixed_START1_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_bps_helix_ends": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_bps_helix_ends/log and /home/benchmark/working_dir/main:62148/rna_denovo_bps_helix_ends/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_bps_helix_ends/log /home/benchmark/working_dir/main:62148/rna_denovo_bps_helix_ends/log\r\n13,14c13,14\r\n< core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB from contents.\r\n18,19c18,19\r\n< core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n25c25\r\n< core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bps_rebuild_srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n47,48c47,48\r\n< core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_dna_bridge": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_dna_bridge/log and /home/benchmark/working_dir/main:62148/rna_denovo_dna_bridge/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_dna_bridge/log /home/benchmark/working_dir/main:62148/rna_denovo_dna_bridge/log\r\n13c13\r\n< core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB from contents.\r\n37c37\r\n< core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_fragment_homology_exclusion": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_fragment_homology_exclusion/log and /home/benchmark/working_dir/main:62148/rna_denovo_fragment_homology_exclusion/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_fragment_homology_exclusion/log /home/benchmark/working_dir/main:62148/rna_denovo_fragment_homology_exclusion/log\r\n15c15\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n21c21\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n23c23\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_grid_vdw": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_grid_vdw/log and /home/benchmark/working_dir/main:62148/rna_denovo_grid_vdw/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_grid_vdw/log /home/benchmark/working_dir/main:62148/rna_denovo_grid_vdw/log\r\n14c14\r\n< core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents.\r\n25c25\r\n< core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'RNA_helix.pdb' automatically determined to be of type PDB from contents.\r\n55c55\r\n< core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_1zdh.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_lariat": { "log": "", "state": "passed" }, "rna_denovo_new_FT_2in_dens": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_2in_dens/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_2in_dens/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_2in_dens/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_2in_dens/log\r\n15,16c15,16\r\n< core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB from contents.\r\n39,40c39,40\r\n< core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'A_helix_1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'B_helix_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_new_FT_5P_j12_leadzyme": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_5P_j12_leadzyme/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_5P_j12_leadzyme/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_5P_j12_leadzyme/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_5P_j12_leadzyme/log\r\n14c14\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n20,21c20,21\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n57c57\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n198,199c198,199\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_START1_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File '5P_j12_leadzyme_NATIVE_1nuj_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_new_FT_RNP_2prot_dens": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_RNP_2prot_dens/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_RNP_2prot_dens/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_RNP_2prot_dens/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_RNP_2prot_dens/log\r\n15c15\r\n< core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.\r\n57c57\r\n< core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'subset_native_protein.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'subset_native_protein_2.pdb' automatically determined to be of type PDB from contents.\r\n61c61\r\n< core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_new_FT_rna_two_chains": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_rna_two_chains/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_rna_two_chains/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_FT_rna_two_chains/log /home/benchmark/working_dir/main:62148/rna_denovo_new_FT_rna_two_chains/log\r\n14c14\r\n< core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.\r\n42c42\r\n< core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_new_libs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_denovo_new_libs/log and /home/benchmark/working_dir/main:62148/rna_denovo_new_libs/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_denovo_new_libs/log /home/benchmark/working_dir/main:62148/rna_denovo_new_libs/log\r\n15c15\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n21c21\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n23c23\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_denovo_symm_hack": { "log": "", "state": "passed" }, "rna_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_design/log and /home/benchmark/working_dir/main:62148/rna_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_design/log /home/benchmark/working_dir/main:62148/rna_design/log\r\n13c13\r\n< core.import_pose.import_pose: File 'chunk001_uucg_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk001_uucg_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_farfar_block_stack": { "log": "", "state": "passed" }, "rna_farfar_noncanonical_hairpin": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log and /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log differ\r\nFiles /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log_new_ft and /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log_new_ft differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log\r\n16c16\r\n< core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents.\r\n44c44\r\n< core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_farfar_noncanonical_hairpin/log_new_ft /home/benchmark/working_dir/main:62148/rna_farfar_noncanonical_hairpin/log_new_ft\r\n15c15\r\n< core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_farfar_syn_chi_res": { "log": "", "state": "passed" }, "rna_helix": { "log": "", "state": "passed" }, "rna_minimize": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_minimize/log and /home/benchmark/working_dir/main:62148/rna_minimize/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_minimize/log /home/benchmark/working_dir/main:62148/rna_minimize/log\r\n14c14\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_minimize_6D_loop_close": { "log": "", "state": "passed" }, "rna_motif": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_motif/log and /home/benchmark/working_dir/main:62148/rna_motif/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_motif/log /home/benchmark/working_dir/main:62148/rna_motif/log\r\n24c24\r\n< core.import_pose.import_pose: File '1Q9A.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1Q9A.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File '1ehz.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ehz.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File '1ehz_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ehz_RNA.pdb' automatically determined to be of type PDB from contents.\r\n109c109\r\n< core.import_pose.import_pose: File '1fmn_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1fmn_RNA.pdb' automatically determined to be of type PDB from contents.\r\n124c124\r\n< core.import_pose.import_pose: File '1gid_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1gid_RNA.pdb' automatically determined to be of type PDB from contents.\r\n145c145\r\n< core.import_pose.import_pose: File '1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n159c159\r\n< core.import_pose.import_pose: File '1xjr_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1xjr_RNA.pdb' automatically determined to be of type PDB from contents.\r\n186c186\r\n< core.import_pose.import_pose: File '2gis_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2gis_RNA.pdb' automatically determined to be of type PDB from contents.\r\n205c205\r\n< core.import_pose.import_pose: File '2lx1_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2lx1_RNA.pdb' automatically determined to be of type PDB from contents.\r\n215c215\r\n< core.import_pose.import_pose: File '2oeu_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2oeu_RNA.pdb' automatically determined to be of type PDB from contents.\r\n245c245\r\n< core.import_pose.import_pose: File '3f2q_RNA_with_FMN.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3f2q_RNA_with_FMN.pdb' automatically determined to be of type PDB from contents.\r\n346c346\r\n< core.import_pose.import_pose: File '3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n364c364\r\n< core.import_pose.import_pose: File '3p49_native_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3p49_native_RNA.pdb' automatically determined to be of type PDB from contents.\r\n381c381\r\n< core.import_pose.import_pose: File '3P49_erraser.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3P49_erraser.pdb' automatically determined to be of type PDB from contents.\r\n411c411\r\n< core.import_pose.import_pose: File '4lck_tbox_RNABC.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4lck_tbox_RNABC.pdb' automatically determined to be of type PDB from contents.\r\n460c460\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n471c471\r\n< core.import_pose.import_pose: File '11-nt-ac_model1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '11-nt-ac_model1.pdb' automatically determined to be of type PDB from contents.\r\n488c488\r\n< core.import_pose.import_pose: File '11-nt_model1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '11-nt_model1.pdb' automatically determined to be of type PDB from contents.\r\n505c505\r\n< core.import_pose.import_pose: File 'R1_model1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'R1_model1.pdb' automatically determined to be of type PDB from contents.\r\n521c521\r\n< core.import_pose.import_pose: File 'c7.10_model1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'c7.10_model1.pdb' automatically determined to be of type PDB from contents.\r\n538c538\r\n< core.import_pose.import_pose: File 'c7.2_model1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'c7.2_model1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_predict_chem_map": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_predict_chem_map/log and /home/benchmark/working_dir/main:62148/rna_predict_chem_map/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_predict_chem_map/log /home/benchmark/working_dir/main:62148/rna_predict_chem_map/log\r\n8c8\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_puzzle11_H2H3H4_run3_connectU40": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_puzzle11_H2H3H4_run3_connectU40/log and /home/benchmark/working_dir/main:62148/rna_puzzle11_H2H3H4_run3_connectU40/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle11_H2H3H4_run3_connectU40/log /home/benchmark/working_dir/main:62148/rna_puzzle11_H2H3H4_run3_connectU40/log\r\n14,15c14,15\r\n< core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB from contents.\r\n18c18\r\n< core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB from contents.\r\n22c22\r\n< core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB from contents.\r\n28c28\r\n< core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'example1.pdb' automatically determined to be of type PDB from contents.\r\n50,51c50,51\r\n< core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'H2.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'H4.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_puzzle12_P5P6P7_DMS": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_puzzle12_P5P6P7_DMS/log and /home/benchmark/working_dir/main:62148/rna_puzzle12_P5P6P7_DMS/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle12_P5P6P7_DMS/log /home/benchmark/working_dir/main:62148/rna_puzzle12_P5P6P7_DMS/log\r\n17c17\r\n< core.import_pose.import_pose: File './P5P6P7_sol.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File './P5P6P7_sol.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log and /home/benchmark/working_dir/main:62148/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log /home/benchmark/working_dir/main:62148/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/log\r\n15c15\r\n< core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB from contents.\r\n22c22\r\n< core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents.\r\n30c30\r\n< core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB from contents.\r\n68c68\r\n< core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'P7P9_erraser_twice.pdb' automatically determined to be of type PDB from contents.\r\n72c72\r\n< core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'top_P15_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents.\r\n76c76\r\n< core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'top_P3_rosetta_NEW2.pdb' automatically determined to be of type PDB from contents.\r\n80c80\r\n< core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'forligation_3wayjunction_newpotential.out.1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_puzzle5_p2_GAAA_mini": { "log": "", "state": "passed" }, "rna_puzzle6_U75G76A77_on_thread1": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_puzzle6_U75G76A77_on_thread1/log and /home/benchmark/working_dir/main:62148/rna_puzzle6_U75G76A77_on_thread1/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle6_U75G76A77_on_thread1/log /home/benchmark/working_dir/main:62148/rna_puzzle6_U75G76A77_on_thread1/log\r\n16c16\r\n< core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'start_thread1_P4P6_COMPLETE.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_puzzle6_j67_into_p6p7rigidbody_thread1": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log and /home/benchmark/working_dir/main:62148/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log /home/benchmark/working_dir/main:62148/rna_puzzle6_j67_into_p6p7rigidbody_thread1/log\r\n15c15\r\n< core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noA77_p7_rigidbody_on_thread1_SOLUTION.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_ribosome_tether": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_ribosome_tether/log and /home/benchmark/working_dir/main:62148/rna_ribosome_tether/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_ribosome_tether/log /home/benchmark/working_dir/main:62148/rna_ribosome_tether/log\r\n13c13\r\n< core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB from contents.\r\n44c44\r\n< core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'bps.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_score": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_score/log and /home/benchmark/working_dir/main:62148/rna_score/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_score/log /home/benchmark/working_dir/main:62148/rna_score/log\r\n14c14\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'chunk002_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_screen_phosphates": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rna_screen_phosphates/log and /home/benchmark/working_dir/main:62148/rna_screen_phosphates/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rna_screen_phosphates/log /home/benchmark/working_dir/main:62148/rna_screen_phosphates/log\r\n13c13\r\n< core.import_pose.import_pose: File 'nobulge_motif_solution_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'nobulge_motif_solution_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rna_suitename": { "log": "", "state": "passed" }, "rnp_ddg_calc_mut": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rnp_ddg_calc_mut/log and /home/benchmark/working_dir/main:62148/rnp_ddg_calc_mut/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_calc_mut/log /home/benchmark/working_dir/main:62148/rnp_ddg_calc_mut/log\r\n9c9\r\n< core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rnp_ddg_calc_setup": { "log": "", "state": "passed" }, "rnp_ddg_calc_wt": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rnp_ddg_calc_wt/log and /home/benchmark/working_dir/main:62148/rnp_ddg_calc_wt/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_calc_wt/log /home/benchmark/working_dir/main:62148/rnp_ddg_calc_wt/log\r\n9c9\r\n< core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rnp_ddg_finalize": { "log": "", "state": "passed" }, "rnp_ddg_relax_command_1": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_1/log and /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_1/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_1/log /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_1/log\r\n24c24\r\n< core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rnp_ddg_relax_command_2": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_2/log and /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_2/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rnp_ddg_relax_command_2/log /home/benchmark/working_dir/main:62148/rnp_ddg_relax_command_2/log\r\n9c9\r\n< core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'relaxed_1ZDH.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rnp_ddg_relax_finalize": { "log": "", "state": "passed" }, "rnp_ddg_relax_setup": { "log": "", "state": "passed" }, "rollmover": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rollmover/log and /home/benchmark/working_dir/main:62148/rollmover/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rollmover/log /home/benchmark/working_dir/main:62148/rollmover/log\r\n14c14\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n87c87\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n98c98\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n109c109\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n120c120\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n131c131\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n142c142\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n153c153\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n164c164\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n175c175\r\n< core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'xml/test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rosetta_scripts_hbond_options": { "log": "", "state": "passed" }, "rosetta_scripts_include": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log1 and /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log2 and /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log1 /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log1\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_include/log2 /home/benchmark/working_dir/main:62148/rosetta_scripts_include/log2\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/S_0002.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rosetta_scripts_info": { "log": "", "state": "passed" }, "rosetta_scripts_jd3": { "log": "", "state": "passed" }, "rosetta_scripts_loops": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rosetta_scripts_loops/log_db_output and /home/benchmark/working_dir/main:62148/rosetta_scripts_loops/log_db_output differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_loops/log_db_output /home/benchmark/working_dir/main:62148/rosetta_scripts_loops/log_db_output\r\n14c14\r\n< core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4fxn.start_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rosetta_scripts_setup": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rosetta_scripts_setup/log and /home/benchmark/working_dir/main:62148/rosetta_scripts_setup/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosetta_scripts_setup/log /home/benchmark/working_dir/main:62148/rosetta_scripts_setup/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rosie_ligand_docking": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log and /home/benchmark/working_dir/main:62148/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log /home/benchmark/working_dir/main:62148/rosie_ligand_docking/output/trigger-00001.ligand_docking_protocol/dock.log\r\n14c14\r\n< core.import_pose.import_pose: File '../../input/protein.pdb ../../output/trigger-00000.molfile_to_params/LG.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../input/protein.pdb ../../output/trigger-00000.molfile_to_params/LG.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rotamer_probability": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rotamer_probability/log and /home/benchmark/working_dir/main:62148/rotamer_probability/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rotamer_probability/log /home/benchmark/working_dir/main:62148/rotamer_probability/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rotamer_recovery": { "log": "", "state": "passed" }, "rotamer_recovery_compare_two_structures": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rotamer_recovery_compare_two_structures/log and /home/benchmark/working_dir/main:62148/rotamer_recovery_compare_two_structures/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rotamer_recovery_compare_two_structures/log /home/benchmark/working_dir/main:62148/rotamer_recovery_compare_two_structures/log\r\n32c32\r\n< core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n36c36\r\n< core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y_0001.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '../../tests/fixbb/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rs_flexbbmoves": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rs_flexbbmoves/log and /home/benchmark/working_dir/main:62148/rs_flexbbmoves/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rs_flexbbmoves/log /home/benchmark/working_dir/main:62148/rs_flexbbmoves/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1elwAC.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1elwAC.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "rs_loophash": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/rs_loophash/log and /home/benchmark/working_dir/main:62148/rs_loophash/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/rs_loophash/log /home/benchmark/working_dir/main:62148/rs_loophash/log\r\n14c14\r\n< core.import_pose.import_pose: File 'in/pdb.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'in/pdb.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "sample_seq_from_probs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/sample_seq_from_probs/log and /home/benchmark/working_dir/main:62148/sample_seq_from_probs/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sample_seq_from_probs/log /home/benchmark/working_dir/main:62148/sample_seq_from_probs/log\r\n14c14\r\n< core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/source/../tests/integration/tests/zinc_heterodimer/1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "sasa_metric_options": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/sasa_metric_options/log and /home/benchmark/working_dir/main:62148/sasa_metric_options/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sasa_metric_options/log /home/benchmark/working_dir/main:62148/sasa_metric_options/log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n88c88\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "score12_docking": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/score12_docking/log and /home/benchmark/working_dir/main:62148/score12_docking/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score12_docking/log /home/benchmark/working_dir/main:62148/score12_docking/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "score_aln": { "log": "", "state": "passed" }, "score_jd2": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/score_jd2/log_jscore and /home/benchmark/working_dir/main:62148/score_jd2/log_jscore differ\r\nFiles /home/benchmark/working_dir/main:62147/score_jd2/log_score_jd2 and /home/benchmark/working_dir/main:62148/score_jd2/log_score_jd2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score_jd2/log_jscore /home/benchmark/working_dir/main:62148/score_jd2/log_jscore\r\n31,32c31,32\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score_jd2/log_score_jd2 /home/benchmark/working_dir/main:62148/score_jd2/log_score_jd2\r\n38c38\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n46c46\r\n< core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "score_only_silence": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/score_only_silence/log and /home/benchmark/working_dir/main:62148/score_only_silence/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/score_only_silence/log /home/benchmark/working_dir/main:62148/score_only_silence/log\r\n14c14\r\n< core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1l6x.min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "sdf_reader": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/sdf_reader/log and /home/benchmark/working_dir/main:62148/sdf_reader/log differ\r\nFiles /home/benchmark/working_dir/main:62147/sdf_reader/min_log and /home/benchmark/working_dir/main:62148/sdf_reader/min_log differ\r\nFiles /home/benchmark/working_dir/main:62147/sdf_reader/molscore_log and /home/benchmark/working_dir/main:62148/sdf_reader/molscore_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sdf_reader/log /home/benchmark/working_dir/main:62148/sdf_reader/log\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_native.pdb.gz' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sdf_reader/min_log /home/benchmark/working_dir/main:62148/sdf_reader/min_log\r\n15c15\r\n< core.import_pose.import_pose: File 'inputs/7cpa_ligand.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_ligand.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sdf_reader/molscore_log /home/benchmark/working_dir/main:62148/sdf_reader/molscore_log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/CP1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/CP1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "secondary_structure_output": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/secondary_structure_output/log and /home/benchmark/working_dir/main:62148/secondary_structure_output/log differ\r\nFiles /home/benchmark/working_dir/main:62147/secondary_structure_output/log_nonauto and /home/benchmark/working_dir/main:62148/secondary_structure_output/log_nonauto differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/secondary_structure_output/log /home/benchmark/working_dir/main:62148/secondary_structure_output/log\r\n14c14\r\n< core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/secondary_structure_output/log_nonauto /home/benchmark/working_dir/main:62148/secondary_structure_output/log_nonauto\r\n14c14\r\n< core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1RD8_clean.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "seed_ensemble_JD2_JI": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/seed_ensemble_JD2_JI/log and /home/benchmark/working_dir/main:62148/seed_ensemble_JD2_JI/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/seed_ensemble_JD2_JI/log /home/benchmark/working_dir/main:62148/seed_ensemble_JD2_JI/log\r\n17c17\r\n< core.import_pose.import_pose: File 'input/9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/9_mer_linear_glycan_test.pdb' automatically determined to be of type PDB from contents.\r\n447c447\r\n< core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.\r\n576c576\r\n< core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.\r\n636c636\r\n< core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.\r\n708c708\r\n< core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.\r\n785c785\r\n< core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.\r\n855c855\r\n< core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.\r\n925c925\r\n< core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/alpha-L-Fucp-1to6-D-GlcpNAc.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "select_best_unique_ligand_poses": { "log": "", "state": "passed" }, "selected_residue_count_metric": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/selected_residue_count_metric/log and /home/benchmark/working_dir/main:62148/selected_residue_count_metric/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/selected_residue_count_metric/log /home/benchmark/working_dir/main:62148/selected_residue_count_metric/log\r\n37c37\r\n< core.import_pose.import_pose: File 'inputs/testpose.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/testpose.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "sequence_profile_constraints": { "log": "", "state": "passed" }, "sequence_recovery": { "log": "", "state": "passed" }, "sequence_tolerance": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/sequence_tolerance/log and /home/benchmark/working_dir/main:62148/sequence_tolerance/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sequence_tolerance/log /home/benchmark/working_dir/main:62148/sequence_tolerance/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/1N7T_01.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1N7T_01.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "set_torsion": { "log": "", "state": "passed" }, "shobuns": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/shobuns/log and /home/benchmark/working_dir/main:62148/shobuns/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/shobuns/log /home/benchmark/working_dir/main:62148/shobuns/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1vii.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "silent2frag": { "log": "", "state": "passed" }, "sim_cryo": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/sim_cryo/log and /home/benchmark/working_dir/main:62148/sim_cryo/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/sim_cryo/log /home/benchmark/working_dir/main:62148/sim_cryo/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/1e6v.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1e6v.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict/log2\r\n61c61\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_1_4_bbmb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_1_4_bbmb/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_1_4_bbmb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_1_4_bbmb/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_1_4_bbmb/log\r\n61c61\r\n< core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_angle": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_angle/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_angle/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_angle/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_angle/log2\r\n72c72\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_anglelength": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_anglelength/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_anglelength/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_anglelength/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_anglelength/log2\r\n72c72\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_beta_thioether_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_bondangle_bondlength": { "log": "", "state": "passed" }, "simple_cycpep_predict_cartesian": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_cartesian/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_cartesian/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_cartesian/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_cartesian/log2\r\n72c72\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_cispro": { "log": "", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat_tailless": { "log": "", "state": "passed" }, "simple_cycpep_predict_design": { "log": "", "state": "passed" }, "simple_cycpep_predict_lanthionine": { "log": "", "state": "passed" }, "simple_cycpep_predict_nmethyl": { "log": "", "state": "passed" }, "simple_cycpep_predict_nterm_isopeptide_lariat": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat/log1 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat/log1 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat/log1\r\n66c66\r\n< core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_nterm_isopeptide_lariat_tailless": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/log1\r\n66c66\r\n< core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_octahedral_metal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_octahedral_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_octahedral_metal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_octahedral_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_octahedral_metal/log\r\n42c42\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_peptoid": { "log": "", "state": "passed" }, "simple_cycpep_predict_setting": { "log": "", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide": { "log": "", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide_reverse": { "log": "", "state": "passed" }, "simple_cycpep_predict_square_planar_metal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_planar_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_planar_metal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_planar_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_planar_metal/log\r\n39c39\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_square_pyramidal_metal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_pyramidal_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_pyramidal_metal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_square_pyramidal_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_square_pyramidal_metal/log\r\n39c39\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_symm_gly": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_symm_gly/log2 and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_symm_gly/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_symm_gly/log2 /home/benchmark/working_dir/main:62148/simple_cycpep_predict_symm_gly/log2\r\n77c77\r\n< core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_symmetric_sampling": { "log": "", "state": "passed" }, "simple_cycpep_predict_tbmb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tbmb/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tbmb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tbmb/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tbmb/log\r\n61c61\r\n< core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_terminal_disulfide": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_internal_permutations": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails_2": { "log": "", "state": "passed" }, "simple_cycpep_predict_tetrahedral_metal": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal/log\r\n39c39\r\n< core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_tetrahedral_metal_asp": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal_asp/log and /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal_asp/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_cycpep_predict_tetrahedral_metal_asp/log /home/benchmark/working_dir/main:62148/simple_cycpep_predict_tetrahedral_metal_asp/log\r\n39c39\r\n< core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/tetrahedral_test.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_cycpep_predict_thioether_cis_sampling": { "log": "", "state": "passed" }, "simple_cycpep_predict_thioether_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_tma": { "log": "", "state": "passed" }, "simple_cycpep_predict_trigonal_planar_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_trigonal_pyramidal_metal": { "log": "", "state": "passed" }, "simple_dna_test": { "log": "", "state": "passed" }, "simple_glycosylation": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_glycosylation/info.log and /home/benchmark/working_dir/main:62148/simple_glycosylation/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_glycosylation/info.log /home/benchmark/working_dir/main:62148/simple_glycosylation/info.log\r\n14c14\r\n< core.import_pose.import_pose: File 'pareto_4JAN_CH103_GP120_renum_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'pareto_4JAN_CH103_GP120_renum_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_glycosylation_alternate_AAs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_glycosylation_alternate_AAs/info.log and /home/benchmark/working_dir/main:62148/simple_glycosylation_alternate_AAs/info.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_glycosylation_alternate_AAs/info.log /home/benchmark/working_dir/main:62148/simple_glycosylation_alternate_AAs/info.log\r\n15c15\r\n< core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1ubq.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_grafting_movers": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_grafting_movers/log and /home/benchmark/working_dir/main:62148/simple_grafting_movers/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_grafting_movers/log /home/benchmark/working_dir/main:62148/simple_grafting_movers/log\r\n14c14\r\n< core.import_pose.import_pose: File 'Start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'Start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_hbondstoatom": { "log": "", "state": "passed" }, "simple_metric_cache": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_metric_cache/log and /home/benchmark/working_dir/main:62148/simple_metric_cache/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metric_cache/log /home/benchmark/working_dir/main:62148/simple_metric_cache/log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n86c86\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_metric_features": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_metric_features/log and /home/benchmark/working_dir/main:62148/simple_metric_features/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metric_features/log /home/benchmark/working_dir/main:62148/simple_metric_features/log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n88c88\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_metric_filter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_metric_filter/log and /home/benchmark/working_dir/main:62148/simple_metric_filter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metric_filter/log /home/benchmark/working_dir/main:62148/simple_metric_filter/log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n88c88\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_metrics": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_metrics/log and /home/benchmark/working_dir/main:62148/simple_metrics/log differ\r\nFiles /home/benchmark/working_dir/main:62147/simple_metrics/name_as_ct_log and /home/benchmark/working_dir/main:62148/simple_metrics/name_as_ct_log differ\r\nFiles /home/benchmark/working_dir/main:62147/simple_metrics/name_as_metric_log and /home/benchmark/working_dir/main:62148/simple_metrics/name_as_metric_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics/log /home/benchmark/working_dir/main:62148/simple_metrics/log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n96c96\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics/name_as_ct_log /home/benchmark/working_dir/main:62148/simple_metrics/name_as_ct_log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n96c96\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics/name_as_metric_log /home/benchmark/working_dir/main:62148/simple_metrics/name_as_metric_log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n96c96\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_metrics_b_factor": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_metrics_b_factor/log and /home/benchmark/working_dir/main:62148/simple_metrics_b_factor/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_b_factor/log /home/benchmark/working_dir/main:62148/simple_metrics_b_factor/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/3gml.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/3gml.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_metrics_in_protocols": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_metrics_in_protocols/log and /home/benchmark/working_dir/main:62148/simple_metrics_in_protocols/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_in_protocols/log /home/benchmark/working_dir/main:62148/simple_metrics_in_protocols/log\r\n11c11\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n87c87\r\n< core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2r0l_1_1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "simple_metrics_per_residue": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log and /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log differ\r\nFiles /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log2 and /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log\r\n11c11\r\n< core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB from contents.\r\n67c67\r\n< core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB from contents.\r\n248c248\r\n< core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3gml.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/simple_metrics_per_residue/log2 /home/benchmark/working_dir/main:62148/simple_metrics_per_residue/log2\r\n11c11\r\n< core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.\r\n40c40\r\n< core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.\r\n119c119\r\n< core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'two_glycans.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "site_constraint": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/site_constraint/log and /home/benchmark/working_dir/main:62148/site_constraint/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/site_constraint/log /home/benchmark/working_dir/main:62148/site_constraint/log\r\n8c8\r\n< core.import_pose.import_pose: File 'input/3AY4_modified.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/3AY4_modified.pdb' automatically determined to be of type PDB from contents.\r\n85c85\r\n< core.import_pose.import_pose: File 'input/4BJ0.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4BJ0.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "small_molecule_lattice_dock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/small_molecule_lattice_dock/log and /home/benchmark/working_dir/main:62148/small_molecule_lattice_dock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/small_molecule_lattice_dock/log /home/benchmark/working_dir/main:62148/small_molecule_lattice_dock/log\r\n13c13\r\n< core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents.\r\n25c25\r\n< core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents.\r\n128c128\r\n< core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/ZIPKOA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "smallmover_resselector": { "log": "", "state": "passed" }, "smart_annealer": { "log": "", "state": "passed" }, "splice_in_4loops_longer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_in_4loops_longer/log and /home/benchmark/working_dir/main:62148/splice_in_4loops_longer/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_in_4loops_longer/log /home/benchmark/working_dir/main:62148/splice_in_4loops_longer/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n147c147\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_in_4loops_shorter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_in_4loops_shorter/log and /home/benchmark/working_dir/main:62148/splice_in_4loops_shorter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_in_4loops_shorter/log /home/benchmark/working_dir/main:62148/splice_in_4loops_shorter/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n143c143\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_H1_H2_longer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_H1_H2_longer/log and /home/benchmark/working_dir/main:62148/splice_out_H1_H2_longer/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H1_H2_longer/log /home/benchmark/working_dir/main:62148/splice_out_H1_H2_longer/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '1Q9KB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1Q9KB.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_H1_H2_same": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_H1_H2_same/log and /home/benchmark/working_dir/main:62148/splice_out_H1_H2_same/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H1_H2_same/log /home/benchmark/working_dir/main:62148/splice_out_H1_H2_same/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '1AHWB.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1AHWB.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_H1_H2_shorter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_H1_H2_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_H1_H2_shorter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H1_H2_shorter/log /home/benchmark/working_dir/main:62148/splice_out_H1_H2_shorter/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '4O51B.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4O51B.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_H3_longer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_H3_longer/log and /home/benchmark/working_dir/main:62148/splice_out_H3_longer/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H3_longer/log /home/benchmark/working_dir/main:62148/splice_out_H3_longer/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '3SM5H.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '3SM5H.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_H3_same": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_H3_same/log and /home/benchmark/working_dir/main:62148/splice_out_H3_same/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H3_same/log /home/benchmark/working_dir/main:62148/splice_out_H3_same/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '2AABH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2AABH.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_H3_shorter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_H3_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_H3_shorter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_H3_shorter/log /home/benchmark/working_dir/main:62148/splice_out_H3_shorter/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '1BFOH.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1BFOH.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_L1_L2_longer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_L1_L2_longer/log and /home/benchmark/working_dir/main:62148/splice_out_L1_L2_longer/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L1_L2_longer/log /home/benchmark/working_dir/main:62148/splice_out_L1_L2_longer/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '2Y6SL.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2Y6SL.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_L1_L2_same": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_L1_L2_same/log and /home/benchmark/working_dir/main:62148/splice_out_L1_L2_same/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L1_L2_same/log /home/benchmark/working_dir/main:62148/splice_out_L1_L2_same/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '2FX7L.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2FX7L.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_L1_L2_shorter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_L1_L2_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_L1_L2_shorter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L1_L2_shorter/log /home/benchmark/working_dir/main:62148/splice_out_L1_L2_shorter/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '2FD6L.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2FD6L.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_L3_longer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_L3_longer/log and /home/benchmark/working_dir/main:62148/splice_out_L3_longer/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L3_longer/log /home/benchmark/working_dir/main:62148/splice_out_L3_longer/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '4HT1L.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4HT1L.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_L3_same": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_L3_same/log and /home/benchmark/working_dir/main:62148/splice_out_L3_same/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L3_same/log /home/benchmark/working_dir/main:62148/splice_out_L3_same/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '4LVEA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4LVEA.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "splice_out_L3_shorter": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/splice_out_L3_shorter/log and /home/benchmark/working_dir/main:62148/splice_out_L3_shorter/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/splice_out_L3_shorter/log /home/benchmark/working_dir/main:62148/splice_out_L3_shorter/log\r\n12c12\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n148c148\r\n< core.import_pose.import_pose: File '4LSTL.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4LSTL.pdb' automatically determined to be of type PDB from contents.\r\n151c151\r\n< core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2BRR.ppk_ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "startfrom_file": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/startfrom_file/startfrom_mover_log and /home/benchmark/working_dir/main:62148/startfrom_file/startfrom_mover_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/startfrom_file/startfrom_mover_log /home/benchmark/working_dir/main:62148/startfrom_file/startfrom_mover_log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_7cpa_input.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "stepwise_lores": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/stepwise_lores/log and /home/benchmark/working_dir/main:62148/stepwise_lores/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/stepwise_lores/log /home/benchmark/working_dir/main:62148/stepwise_lores/log\r\n20,22c20,22\r\n< core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'srp_domainIV_HELIX1.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'srp_domainIV_HELIX2.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'srp_domainIV_native_1lnt_RNA.pdb' automatically determined to be of type PDB from contents.\r\n25c25\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n27c27\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n29c29\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n31c31\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n36c36\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n38c38\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n40c40\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "stored_residue_subset": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/stored_residue_subset/log and /home/benchmark/working_dir/main:62148/stored_residue_subset/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/stored_residue_subset/log /home/benchmark/working_dir/main:62148/stored_residue_subset/log\r\n38c38\r\n< core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "struc_set_fragment_picker": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/struc_set_fragment_picker/log and /home/benchmark/working_dir/main:62148/struc_set_fragment_picker/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/struc_set_fragment_picker/log /home/benchmark/working_dir/main:62148/struc_set_fragment_picker/log\r\n9c9\r\n< core.import_pose.import_pose: File 'input/source_structures/2e42.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/2e42.pdb.gz' automatically determined to be of type PDB from contents.\r\n11c11\r\n< core.import_pose.import_pose: File 'input/source_structures/2e43.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/2e43.pdb.gz' automatically determined to be of type PDB from contents.\r\n13c13\r\n< core.import_pose.import_pose: File 'input/source_structures/2e7s.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/2e7s.pdb.gz' automatically determined to be of type PDB from contents.\r\n15c15\r\n< core.import_pose.import_pose: File 'input/source_structures/2ebo.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/2ebo.pdb.gz' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File 'input/source_structures/2eqb.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/2eqb.pdb.gz' automatically determined to be of type PDB from contents.\r\n19c19\r\n< core.import_pose.import_pose: File 'input/source_structures/2fxm.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/2fxm.pdb.gz' automatically determined to be of type PDB from contents.\r\n46c46\r\n< core.import_pose.import_pose: File 'input/source_structures/2fyz.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/2fyz.pdb.gz' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'input/source_structures/3b5n.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/3b5n.pdb.gz' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'input/source_structures/3bas.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/3bas.pdb.gz' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'input/source_structures/3coq.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/3coq.pdb.gz' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'input/source_structures/3cp1.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/source_structures/3cp1.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "super_aln": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/super_aln/log and /home/benchmark/working_dir/main:62148/super_aln/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/super_aln/log /home/benchmark/working_dir/main:62148/super_aln/log\r\n8,9c8,9\r\n< core.import_pose.import_pose: File 'input/A3RIY0_ECOLX.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/1BLS_0001.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/A3RIY0_ECOLX.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/1BLS_0001.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "supercharge": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/supercharge/log1 and /home/benchmark/working_dir/main:62148/supercharge/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/supercharge/log2 and /home/benchmark/working_dir/main:62148/supercharge/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/supercharge/log1 /home/benchmark/working_dir/main:62148/supercharge/log1\r\n14c14\r\n< core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/supercharge/log2 /home/benchmark/working_dir/main:62148/supercharge/log2\r\n14c14\r\n< core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2B3P_A_min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "surface_docking": { "log": "", "state": "passed" }, "swa_protein_CCDclose": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_protein_CCDclose/log and /home/benchmark/working_dir/main:62148/swa_protein_CCDclose/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_CCDclose/log /home/benchmark/working_dir/main:62148/swa_protein_CCDclose/log\r\n8c8\r\n< core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_protein_build_at_Cterminus": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_protein_build_at_Cterminus/log and /home/benchmark/working_dir/main:62148/swa_protein_build_at_Cterminus/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_build_at_Cterminus/log /home/benchmark/working_dir/main:62148/swa_protein_build_at_Cterminus/log\r\n8c8\r\n< core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_protein_build_at_Nterminus": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_protein_build_at_Nterminus/log and /home/benchmark/working_dir/main:62148/swa_protein_build_at_Nterminus/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_build_at_Nterminus/log /home/benchmark/working_dir/main:62148/swa_protein_build_at_Nterminus/log\r\n8c8\r\n< core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_protein_cluster": { "log": "", "state": "passed" }, "swa_protein_combine_loops": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_protein_combine_loops/log and /home/benchmark/working_dir/main:62148/swa_protein_combine_loops/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_combine_loops/log /home/benchmark/working_dir/main:62148/swa_protein_combine_loops/log\r\n8c8\r\n< core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_protein_loop_sampler": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_protein_loop_sampler/log and /home/benchmark/working_dir/main:62148/swa_protein_loop_sampler/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_loop_sampler/log /home/benchmark/working_dir/main:62148/swa_protein_loop_sampler/log\r\n8c8\r\n< core.import_pose.import_pose: File '2it7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2it7.pdb' automatically determined to be of type PDB from contents.\r\n13c13\r\n< core.import_pose.import_pose: File 'noloop5-8_2it7_stripsidechain.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noloop5-8_2it7_stripsidechain.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_protein_prepack": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_protein_prepack/log and /home/benchmark/working_dir/main:62148/swa_protein_prepack/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_protein_prepack/log /home/benchmark/working_dir/main:62148/swa_protein_prepack/log\r\n8,9c8,9\r\n< core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'noloop_1oyc_min.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1oyc_min.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'noloop_1oyc_min.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_erraser": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_erraser/log and /home/benchmark/working_dir/main:62148/swa_rna_erraser/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_erraser/log /home/benchmark/working_dir/main:62148/swa_rna_erraser/log\r\n15c15\r\n< core.import_pose.import_pose: File 'native_struct.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'native_struct.pdb' automatically determined to be of type PDB from contents.\r\n18c18\r\n< core.import_pose.import_pose: File 'missing_rebuild_res_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'missing_rebuild_res_native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_01_append": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_01_append/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_01_append/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_01_append/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_01_append/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_02_prepend": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_02_prepend/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_02_prepend/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_02_prepend/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_02_prepend/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_03_append_to_silent": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_03_append_to_silent/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_03_append_to_silent/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_03_append_to_silent/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_03_append_to_silent/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_04_clustering": { "log": "", "state": "passed" }, "swa_rna_gagu_05_prepend_to_5primeterminus": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_05_prepend_to_5primeterminus/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_05_prepend_to_5primeterminus/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_05_prepend_to_5primeterminus/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_05_prepend_to_5primeterminus/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_06_append_to_3primeterminus": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_06_append_to_3primeterminus/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_06_append_to_3primeterminus/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_06_append_to_3primeterminus/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_06_append_to_3primeterminus/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_07_prepend_dinucleotide": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_07_prepend_dinucleotide/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_07_prepend_dinucleotide/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_07_prepend_dinucleotide/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_07_prepend_dinucleotide/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_08_append_dinucleotide": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_08_append_dinucleotide/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_08_append_dinucleotide/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_08_append_dinucleotide/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_08_append_dinucleotide/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_09_sample_virtual_ribose": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_09_sample_virtual_ribose/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_09_sample_virtual_ribose/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_09_sample_virtual_ribose/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_09_sample_virtual_ribose/log\r\n28c28\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_10_prepend_and_ccd_close": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_10_prepend_and_ccd_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_10_prepend_and_ccd_close/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_10_prepend_and_ccd_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_10_prepend_and_ccd_close/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_11_append_and_ccd_close": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_11_append_and_ccd_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_11_append_and_ccd_close/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_11_append_and_ccd_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_11_append_and_ccd_close/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_12_helix_addition": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_12_helix_addition/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_12_helix_addition/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_12_helix_addition/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_12_helix_addition/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n27c27\r\n< core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'upper_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_13_chunk_combination_and_closure": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_13_chunk_combination_and_closure/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_13_chunk_combination_and_closure/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_13_chunk_combination_and_closure/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_13_chunk_combination_and_closure/log\r\n22c22\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_14_combine_long_loop_filtering": { "log": "", "state": "passed" }, "swa_rna_gagu_15_combine_long_loop_sampling": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_15_combine_long_loop_sampling/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_15_combine_long_loop_sampling/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_15_combine_long_loop_sampling/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_15_combine_long_loop_sampling/log\r\n22c22\r\n< core.import_pose.import_pose: File 'native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'native.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_17_append_floating_base": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_17_append_floating_base/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_17_append_floating_base/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_17_append_floating_base/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_17_append_floating_base/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_18_rebuild_bulge": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_18_rebuild_bulge/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_18_rebuild_bulge/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_18_rebuild_bulge/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_18_rebuild_bulge/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_19_prepend_floating_base_by_jump": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_19_prepend_floating_base_by_jump/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_19_prepend_floating_base_by_jump/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_19_prepend_floating_base_by_jump/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_19_prepend_floating_base_by_jump/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_20_append_floating_base_by_jump": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_20_append_floating_base_by_jump/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_20_append_floating_base_by_jump/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_20_append_floating_base_by_jump/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_20_append_floating_base_by_jump/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'lower_helix.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_22_prepend_and_kic_close": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_22_prepend_and_kic_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_22_prepend_and_kic_close/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_22_prepend_and_kic_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_22_prepend_and_kic_close/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_gagu_23_append_and_kic_close": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_gagu_23_append_and_kic_close/log and /home/benchmark/working_dir/main:62148/swa_rna_gagu_23_append_and_kic_close/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_gagu_23_append_and_kic_close/log /home/benchmark/working_dir/main:62148/swa_rna_gagu_23_append_and_kic_close/log\r\n15c15\r\n< core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'rosetta_model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swa_rna_loop_clusterer": { "log": "", "state": "passed" }, "swa_rna_loop_sampler": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swa_rna_loop_sampler/log and /home/benchmark/working_dir/main:62148/swa_rna_loop_sampler/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swa_rna_loop_sampler/log /home/benchmark/working_dir/main:62148/swa_rna_loop_sampler/log\r\n15c15\r\n< core.import_pose.import_pose: File 'small_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'small_native.pdb' automatically determined to be of type PDB from contents.\r\n21c21\r\n< core.import_pose.import_pose: File 'small_template.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'small_template.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "sweep_respair_energies": { "log": "", "state": "passed" }, "swm_add_rosettascripts": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_add_rosettascripts/log and /home/benchmark/working_dir/main:62148/swm_add_rosettascripts/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_add_rosettascripts/log /home/benchmark/working_dir/main:62148/swm_add_rosettascripts/log\r\n11c11\r\n< core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.\r\n21c21\r\n< core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_beta_peptide_loop": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_beta_peptide_loop/log and /home/benchmark/working_dir/main:62148/swm_beta_peptide_loop/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_beta_peptide_loop/log /home/benchmark/working_dir/main:62148/swm_beta_peptide_loop/log\r\n54c54\r\n< core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n62c62\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n71c71\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n73c73\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_build_full_model": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_build_full_model/log and /home/benchmark/working_dir/main:62148/swm_build_full_model/log differ\r\nFiles /home/benchmark/working_dir/main:62147/swm_build_full_model/log_legacy and /home/benchmark/working_dir/main:62148/swm_build_full_model/log_legacy differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_build_full_model/log /home/benchmark/working_dir/main:62148/swm_build_full_model/log\r\n15c15\r\n< core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_build_full_model/log_legacy /home/benchmark/working_dir/main:62148/swm_build_full_model/log_legacy\r\n15c15\r\n< core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'kiss_add_PK_dock_NATIVE_1y26_RNA.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_dna_bridge": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_dna_bridge/log and /home/benchmark/working_dir/main:62148/swm_dna_bridge/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_dna_bridge/log /home/benchmark/working_dir/main:62148/swm_dna_bridge/log\r\n22c22\r\n< core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5f56_start.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '5f56.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n62c62\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n67c67\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n71c71\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_dna_loop": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_dna_loop/log and /home/benchmark/working_dir/main:62148/swm_dna_loop/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_dna_loop/log /home/benchmark/working_dir/main:62148/swm_dna_loop/log\r\n22c22\r\n< core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_general_polymer_sampler": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_general_polymer_sampler/log and /home/benchmark/working_dir/main:62148/swm_general_polymer_sampler/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_general_polymer_sampler/log /home/benchmark/working_dir/main:62148/swm_general_polymer_sampler/log\r\n31c31\r\n< core.import_pose.import_pose: File '6ofx_errasermin_CCA_start3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '6ofx_errasermin_CCA_start3.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n61c61\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n63c63\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_l_rna": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_l_rna/log and /home/benchmark/working_dir/main:62148/swm_l_rna/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_l_rna/log /home/benchmark/working_dir/main:62148/swm_l_rna/log\r\n23c23\r\n< core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_protein_CCDmove": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_protein_CCDmove/log and /home/benchmark/working_dir/main:62148/swm_protein_CCDmove/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_CCDmove/log /home/benchmark/working_dir/main:62148/swm_protein_CCDmove/log\r\n35c35\r\n< core.import_pose.import_pose: File 'shortloop_mini_1alc_H.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'shortloop_mini_1alc_H.pdb' automatically determined to be of type PDB from contents.\r\n38c38\r\n< core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_protein_from_scratch": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_protein_from_scratch/log and /home/benchmark/working_dir/main:62148/swm_protein_from_scratch/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_from_scratch/log /home/benchmark/working_dir/main:62148/swm_protein_from_scratch/log\r\n35c35\r\n< core.import_pose.import_pose: File '2jof.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2jof.pdb' automatically determined to be of type PDB from contents.\r\n38c38\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n40c40\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n42c42\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n44c44\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_protein_loop_sampler": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_protein_loop_sampler/log and /home/benchmark/working_dir/main:62148/swm_protein_loop_sampler/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_loop_sampler/log /home/benchmark/working_dir/main:62148/swm_protein_loop_sampler/log\r\n54c54\r\n< core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n62c62\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n71c71\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n73c73\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_protein_move_inside_coiledcoil_by_bond": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_protein_move_inside_coiledcoil_by_bond/log and /home/benchmark/working_dir/main:62148/swm_protein_move_inside_coiledcoil_by_bond/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_move_inside_coiledcoil_by_bond/log /home/benchmark/working_dir/main:62148/swm_protein_move_inside_coiledcoil_by_bond/log\r\n34c34\r\n< core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB from contents.\r\n37c37\r\n< core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n55c55\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n57c57\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n66c66\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n68c68\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_protein_move_inside_helix_by_bond": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_protein_move_inside_helix_by_bond/log and /home/benchmark/working_dir/main:62148/swm_protein_move_inside_helix_by_bond/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_move_inside_helix_by_bond/log /home/benchmark/working_dir/main:62148/swm_protein_move_inside_helix_by_bond/log\r\n34c34\r\n< core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'outside_2zta.pdb' automatically determined to be of type PDB from contents.\r\n36c36\r\n< core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inside_2zta.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2zta.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_protein_preminimize": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_protein_preminimize/log and /home/benchmark/working_dir/main:62148/swm_protein_preminimize/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_protein_preminimize/log /home/benchmark/working_dir/main:62148/swm_protein_preminimize/log\r\n36c36\r\n< core.import_pose.import_pose: File 'noloop_mini_1alc_H.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noloop_mini_1alc_H.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_1alc.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_base_pair_constraints": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/log and /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/log differ\r\nFiles /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/nocst_log and /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/nocst_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/log /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/log\r\n22c22\r\n< core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB from contents.\r\n62c62\r\n< core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents.\r\n68c68\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n70c70\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n72c72\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n74c74\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n77c77\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n79c79\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n81c81\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_base_pair_constraints/nocst_log /home/benchmark/working_dir/main:62148/swm_rna_base_pair_constraints/nocst_log\r\n22c22\r\n< core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'farfar_loopE_354d_START.pdb' automatically determined to be of type PDB from contents.\r\n44c44\r\n< core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'farfar_loopE_354d_RNA.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n59c59\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n61c61\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n63c63\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_checkpoint_partition": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_checkpoint_partition/log and /home/benchmark/working_dir/main:62148/swm_rna_checkpoint_partition/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_checkpoint_partition/log /home/benchmark/working_dir/main:62148/swm_rna_checkpoint_partition/log\r\n24c24\r\n< core.import_pose.import_pose: File 'start_5n.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'start_5n.pdb' automatically determined to be of type PDB from contents.\r\n31c31\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n33c33\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n35c35\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n37c37\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_fourwayjunction": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_fourwayjunction/log and /home/benchmark/working_dir/main:62148/swm_rna_fourwayjunction/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_fourwayjunction/log /home/benchmark/working_dir/main:62148/swm_rna_fourwayjunction/log\r\n23,26c23,26\r\n< core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents.\r\n38c38\r\n< core.import_pose.import_pose: File 'fourway_reference.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'fourway_reference.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n55c55\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_loop_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_loop_design/log and /home/benchmark/working_dir/main:62148/swm_rna_loop_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_loop_design/log /home/benchmark/working_dir/main:62148/swm_rna_loop_design/log\r\n24c24\r\n< core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'no_loop5_j44a_2R8SR.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'j44a_2R8SR.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'j44a_2R8SR.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n55c55\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_move_align_dock": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_move_align_dock/log and /home/benchmark/working_dir/main:62148/swm_rna_move_align_dock/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_align_dock/log /home/benchmark/working_dir/main:62148/swm_rna_move_align_dock/log\r\n22c22\r\n< core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAQ.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAQ.pdb' automatically determined to be of type PDB from contents.\r\n26c26\r\n< core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAP.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'gaaa_minor_fixed_2oiu_RNAP.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'ALIGN_2bp_gaaa_minor_free_2oiu_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ALIGN_2bp_gaaa_minor_free_2oiu_RNA.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_move_inside_helix_by_bond": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_bond/log and /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_bond/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_bond/log /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_bond/log\r\n24,26c24,26\r\n< core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB from contents.\r\n28c28\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n30c30\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n32c32\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n34c34\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_move_inside_helix_by_jump": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_jump/log and /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_jump/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_inside_helix_by_jump/log /home/benchmark/working_dir/main:62148/swm_rna_move_inside_helix_by_jump/log\r\n24,26c24,26\r\n< core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'outside_full_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'inside_full_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB from contents.\r\n28c28\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n30c30\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n32c32\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n34c34\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_move_two_strands": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_move_two_strands/log and /home/benchmark/working_dir/main:62148/swm_rna_move_two_strands/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_move_two_strands/log /home/benchmark/working_dir/main:62148/swm_rna_move_two_strands/log\r\n24,26c24,26\r\n< core.import_pose.import_pose: File 'strandA_full_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'strandB_full_helix.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'strandA_full_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'strandB_full_helix.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'full_helix.pdb' automatically determined to be of type PDB from contents.\r\n28c28\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n30c30\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n32c32\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n34c34\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_nickedhelix": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_nickedhelix/log and /home/benchmark/working_dir/main:62148/swm_rna_nickedhelix/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_nickedhelix/log /home/benchmark/working_dir/main:62148/swm_rna_nickedhelix/log\r\n23,24c23,24\r\n< core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'helix_NEW.pdb' automatically determined to be of type PDB from contents.\r\n36c36\r\n< core.import_pose.import_pose: File 'twoparthelix_reference.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'twoparthelix_reference.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_protonated_adenosine": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_protonated_adenosine/log and /home/benchmark/working_dir/main:62148/swm_rna_protonated_adenosine/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_protonated_adenosine/log /home/benchmark/working_dir/main:62148/swm_rna_protonated_adenosine/log\r\n23c23\r\n< core.import_pose.import_pose: File 'noloop_4jrd_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noloop_4jrd_RNA.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File '4jrd_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '4jrd_RNA.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n45c45\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n47c47\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n51c51\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n53c53\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_singleloop": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_singleloop/log and /home/benchmark/working_dir/main:62148/swm_rna_singleloop/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_singleloop/log /home/benchmark/working_dir/main:62148/swm_rna_singleloop/log\r\n23c23\r\n< core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'noloop_mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'mini_3d2v_RNA.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n56c56\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n58c58\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n60c60\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "swm_rna_srl_triplet": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/swm_rna_srl_triplet/log and /home/benchmark/working_dir/main:62148/swm_rna_srl_triplet/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/swm_rna_srl_triplet/log /home/benchmark/working_dir/main:62148/swm_rna_srl_triplet/log\r\n19c19\r\n< core.import_pose.import_pose: File 'srl_free_bulgedG_HELIX2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'srl_free_bulgedG_HELIX2.pdb' automatically determined to be of type PDB from contents.\r\n32c32\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n37c37\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n41c41\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n46c46\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n50c50\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n335c335\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n338c338\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n340c340\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n342c342\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n344c344\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n346c346\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n348c348\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n350c350\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n630c630\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n633c633\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n635c635\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n637c637\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n639c639\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n641c641\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n643c643\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n645c645\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n926c926\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n929c929\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n931c931\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n933c933\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n935c935\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n937c937\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n939c939\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n941c941\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n1221c1221\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1224c1224\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n1226c1226\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n1228c1228\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1230c1230\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1232c1232\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1234c1234\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n1236c1236\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n1522c1522\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1525c1525\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n1527c1527\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n1529c1529\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1531c1531\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1533c1533\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1535c1535\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n1537c1537\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n1822c1822\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1825c1825\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n1827c1827\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n1829c1829\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1831c1831\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1833c1833\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n1835c1835\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n1837c1837\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n2116c2116\r\n< core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'TRIPLET_srl_free_bulgedG_1q9a_RNA.pdb' automatically determined to be of type PDB from contents.\r\n2119c2119\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/cg_standard.pdb' automatically determined to be of type PDB from contents.\r\n2121c2121\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/ua_handle_1q9a.pdb' automatically determined to be of type PDB from contents.\r\n2123c2123\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_1raw_RNA.pdb' automatically determined to be of type PDB from contents.\r\n2125c2125\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//base_pairs/gg_2grb_RNA.pdb' automatically determined to be of type PDB from contents.\r\n2127c2127\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA.pdb' automatically determined to be of type PDB from contents.\r\n2129c2129\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//uturns/uturn_t_loop_3l0u_RNA_thread_to_uaa.pdb' automatically determined to be of type PDB from contents.\r\n2131c2131\r\n< core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'ROSETTA/database/sampling/rna/submotif//srl/GUA_GA_430d.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "symm_disulfidize": { "log": "", "state": "passed" }, "symm_rotamer_boltzmann": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/symm_rotamer_boltzmann/log and /home/benchmark/working_dir/main:62148/symm_rotamer_boltzmann/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symm_rotamer_boltzmann/log /home/benchmark/working_dir/main:62148/symm_rotamer_boltzmann/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/trpcage.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "symmetric_cycpep_align_and_symmetrize": { "log": "", "state": "passed" }, "symmetric_docking": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/symmetric_docking/log and /home/benchmark/working_dir/main:62148/symmetric_docking/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetric_docking/log /home/benchmark/working_dir/main:62148/symmetric_docking/log\r\n37c37\r\n< core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB from contents.\r\n43c43\r\n< core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/native_test_in.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "symmetrical_residue_selector": { "log": "", "state": "passed" }, "symmetry_data_resource": { "log": "", "state": "passed" }, "symmetry_multicomponent": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log1 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log1 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log2 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log2 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log3 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log3 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log4 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log4 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log5 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log5 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log6 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log6 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log7 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log7 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log8 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log8 differ\r\nFiles /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log9 and /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log9 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log1 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log1\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test1.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log2 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log2\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test1_ij1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test1_ij1.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log3 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log3\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test1_ij2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test1_ij2.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log4 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log4\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test1_ij8.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test1_ij8.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log5 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log5\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log6 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log6\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test2.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log7 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log7\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test2_ij1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test2_ij1.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log8 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log8\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test3.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test3.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/symmetry_multicomponent/log9 /home/benchmark/working_dir/main:62148/symmetry_multicomponent/log9\r\n8c8\r\n< core.import_pose.import_pose: File 'input/test7.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test7.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "target_clash": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/target_clash/log and /home/benchmark/working_dir/main:62148/target_clash/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/target_clash/log /home/benchmark/working_dir/main:62148/target_clash/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n70c70\r\n< core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/1l2y.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "task_selector": { "log": "", "state": "passed" }, "tcrmodel": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/tcrmodel/log and /home/benchmark/working_dir/main:62148/tcrmodel/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/tcrmodel/log /home/benchmark/working_dir/main:62148/tcrmodel/log\r\n33c33\r\n< core.import_pose.import_pose: File 'input/ora_tmplt_piece.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/ora_tmplt_piece.pdb' automatically determined to be of type PDB from contents.\r\n35c35\r\n< core.import_pose.import_pose: File 'input/orb_tmplt_piece.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/orb_tmplt_piece.pdb' automatically determined to be of type PDB from contents.\r\n37c37\r\n< core.import_pose.import_pose: File 'input/gma_tmplt_piece.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/gma_tmplt_piece.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File 'input/cdr3a_tmplt_piece.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/cdr3a_tmplt_piece.pdb' automatically determined to be of type PDB from contents.\r\n41,42c41,42\r\n< core.import_pose.import_pose: File 'input/gmb_tmplt_piece.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/cdr3b_tmplt_piece.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/gmb_tmplt_piece.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/cdr3b_tmplt_piece.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "template_features": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/template_features/log and /home/benchmark/working_dir/main:62148/template_features/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/template_features/log /home/benchmark/working_dir/main:62148/template_features/log\r\n8,9c8,9\r\n< core.import_pose.import_pose: File 'input/1VYHA.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File 'input/1FXWF.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1VYHA.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File 'input/1FXWF.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "tensorflow_connection_test": { "log": "", "state": "passed" }, "tensorflow_manager": { "log": "", "state": "passed" }, "tensorflow_simple_model_load_and_evaluate": { "log": "", "state": "passed" }, "test1_benchmark": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/test1_benchmark/log and /home/benchmark/working_dir/main:62148/test1_benchmark/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test1_benchmark/log /home/benchmark/working_dir/main:62148/test1_benchmark/log\r\n9c9\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n22c22\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n40c40\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n49c49\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n55c55\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n62c62\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n66c66\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n69c69\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n71c71\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n7178c7178\r\n< core.import_pose.import_pose: File 'input/test_in_w_termini.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in_w_termini.pdb' automatically determined to be of type PDB from contents.\r\n7180c7180\r\n< core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents.\r\n7188c7188\r\n< core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents.\r\n7227c7227\r\n< core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents.\r\n7248c7248\r\n< core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/test_in.pdb' automatically determined to be of type PDB from contents.\r\n7273c7273\r\n< core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/1aay.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "test_computed_saxs_spectrum": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS and /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS differ\r\nFiles /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS_fa and /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS_fa differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS\r\n43c43\r\n< core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test_computed_saxs_spectrum/log_SAXS_fa /home/benchmark/working_dir/main:62148/test_computed_saxs_spectrum/log_SAXS_fa\r\n62c62\r\n< core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1a62A-ideal.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "test_d_l_readin": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/test_d_l_readin/log and /home/benchmark/working_dir/main:62148/test_d_l_readin/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/test_d_l_readin/log /home/benchmark/working_dir/main:62148/test_d_l_readin/log\r\n8c8\r\n< core.import_pose.import_pose: File 'inputs/a98.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/a98.pdb' automatically determined to be of type PDB from contents.\r\n13c13\r\n< core.import_pose.import_pose: File 'inputs/d98.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/d98.pdb' automatically determined to be of type PDB from contents.\r\n17c17\r\n< core.import_pose.import_pose: File 'inputs/nlu.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/nlu.pdb' automatically determined to be of type PDB from contents.\r\n20c20\r\n< core.import_pose.import_pose: File 'inputs/dnlu.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/dnlu.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "test_degreaser": { "log": "", "state": "passed" }, "test_energy_method_options": { "log": "", "state": "passed" }, "test_idealize": { "log": "", "state": "passed" }, "test_rosetta_thread_manager_advanced_API": { "log": "", "state": "passed" }, "test_rosetta_thread_manager_basic_API": { "log": "", "state": "passed" }, "thermal_sampler": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/thermal_sampler/log and /home/benchmark/working_dir/main:62148/thermal_sampler/log differ\r\nFiles /home/benchmark/working_dir/main:62147/thermal_sampler/log2 and /home/benchmark/working_dir/main:62148/thermal_sampler/log2 differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/thermal_sampler/log /home/benchmark/working_dir/main:62148/thermal_sampler/log\r\n13c13\r\n< core.import_pose.import_pose: File 'uucg_native.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'uucg_native.pdb' automatically determined to be of type PDB from contents.\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/thermal_sampler/log2 /home/benchmark/working_dir/main:62148/thermal_sampler/log2\r\n13c13\r\n< core.import_pose.import_pose: File 'gaaa_nonnative.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'gaaa_nonnative.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "thread_local_tracers_check": { "log": "", "state": "passed" }, "threefold_symm_peptide_design": { "log": "", "state": "passed" }, "threefoldlinkermover_tbmb": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb/log and /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb/log /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb/log\r\n37c37\r\n< core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "threefoldlinkermover_tbmb_symmetric": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb_symmetric/log and /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb_symmetric/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/threefoldlinkermover_tbmb_symmetric/log /home/benchmark/working_dir/main:62148/threefoldlinkermover_tbmb_symmetric/log\r\n37c37\r\n< core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/TBStest1.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "tna_base_pairs": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/tna_base_pairs/log and /home/benchmark/working_dir/main:62148/tna_base_pairs/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/tna_base_pairs/log /home/benchmark/working_dir/main:62148/tna_base_pairs/log\r\n14c14\r\n< core.import_pose.import_pose: File 'long.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'long.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "torsion_restricted_sampling": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/torsion_restricted_sampling/log and /home/benchmark/working_dir/main:62148/torsion_restricted_sampling/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/torsion_restricted_sampling/log /home/benchmark/working_dir/main:62148/torsion_restricted_sampling/log\r\n43c43\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n52c52\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n54c54\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n64c64\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n66c66\r\n< core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'input/4fxn.start.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "trRosetta": { "log": "", "state": "passed" }, "trRosettaConstraintGenerator": { "log": "", "state": "passed" }, "trRosettaConstraintGenerator_rosettascripts": { "log": "", "state": "passed" }, "trRosettaProtocolMover": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite_only": { "log": "", "state": "passed" }, "trRosetta_test_predict": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write_only": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_init_by_bins": { "log": "", "state": "passed" }, "unfolded_state_energy_calc": { "log": "", "state": "passed" }, "validate_database": { "log": "", "state": "passed" }, "vancomycin": { "log": "", "state": "passed" }, "vip": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/vip/log and /home/benchmark/working_dir/main:62148/vip/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/vip/log /home/benchmark/working_dir/main:62148/vip/log\r\n8c8\r\n< core.import_pose.import_pose: File 'Start_Lambda_Model.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'Start_Lambda_Model.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "voids_penalty_energy_design": { "log": "", "state": "passed" }, "voids_penalty_energy_design_symmetry": { "log": "", "state": "passed" }, "write_mol_file": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/write_mol_file/log and /home/benchmark/working_dir/main:62148/write_mol_file/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/write_mol_file/log /home/benchmark/working_dir/main:62148/write_mol_file/log\r\n14c14\r\n< core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File 'inputs/7cpa_input.pdb.gz' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "zinc_heterodimer": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/zinc_heterodimer/log and /home/benchmark/working_dir/main:62148/zinc_heterodimer/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/zinc_heterodimer/log /home/benchmark/working_dir/main:62148/zinc_heterodimer/log\r\n29c29\r\n< core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161.pdb' automatically determined to be of type PDB from contents.\r\n33,34c33,34\r\n< core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB\r\n< core.import_pose.import_pose: File '2D4X.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1UBQ.pdb' automatically determined to be of type PDB from contents.\r\n> core.import_pose.import_pose: File '2D4X.pdb' automatically determined to be of type PDB from contents.\r\n48c48\r\n< core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB from contents.\r\n73c73\r\n< core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '2D4X.C135-C137-H192_match_00161_1UBQ_2D4X.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "zinc_homodimer_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/zinc_homodimer_design/log and /home/benchmark/working_dir/main:62148/zinc_homodimer_design/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/zinc_homodimer_design/log /home/benchmark/working_dir/main:62148/zinc_homodimer_design/log\r\n35c35\r\n< core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.1YZM_1_H35H39_1_ZNX_360_INPUT.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.1YZM_1_H35H39_1_ZNX_360_INPUT.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" }, "zinc_homodimer_setup": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62147/zinc_homodimer_setup/log and /home/benchmark/working_dir/main:62148/zinc_homodimer_setup/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/zinc_homodimer_setup/log /home/benchmark/working_dir/main:62148/zinc_homodimer_setup/log\r\n12c12\r\n< core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1YZM_1_H12H16_1_ZNX.pdb' automatically determined to be of type PDB from contents.\r\n15c15\r\n< core.import_pose.import_pose: File '1YZM_1_H35H39_1_ZNX.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1YZM_1_H35H39_1_ZNX.pdb' automatically determined to be of type PDB from contents.\r\n39c39\r\n< core.import_pose.import_pose: File '1YZM_WT.pdb' automatically determined to be of type PDB\r\n---\r\n> core.import_pose.import_pose: File '1YZM_WT.pdb' automatically determined to be of type PDB from contents.\r\n", "state": "failed" } } }