Test: ubuntu.clang.cxx11thread.serialization.python38.PyRosetta.unit 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20656」
Test files: 「file-system-view」 「file-list-view」
Daemon: nobu-5     Started at: 2025-03-10 13:41:43     Run time: 0:36:09      State: failed

Failed sub-tests (click for more details):
C001_Carbohydrates_Demo01 D010_Pose_structure D020_Pose_scoring D030_Fold_tree D040_Movemap D050_Packer_task D060_Folding D070_Refinement D080_Loop_modeling D090_Ala_scan D100_Docking D110_DNA_interface D120_Ligand_interface T000_Imports T005_Bindings T006_Options T007_TracerIO T008_Serialization T009_Exceptions T010_LoadPDB T020_Pose_Bindings T040_Types T100_basic T110_numeric T120_core.RotamerSets T121_core.ResidueSelector T150_PyMOL_Integration T150_core.misc.lkball T190_Bindings_Utility T200_Scoring T201_Scoring_pre_talaris T220_AtomAtomPairEnergies T250_Constraints T300_PyJobDistributor T400_Refinement T500_Packing T600_Docking T650_LoopsKIC T660_LoopBuilding T700_FoldTree T800_ClassicRelax T850_SubClassing T860_SubClassing_EnergyMethods T870_SubClassing_EnergyMethods2 T880_Other Workshop2test Workshop3test Workshop4test Workshop5test Workshop6test Workshop7test Workshop8test Workshop9_my_shapes Workshop9test

Running: cd /home/benchmark/rosetta/source/src/python/PyRosetta && /home/benchmark/prefix/nobu-5/ubuntu/python-3.8.gcc/c366c4308e4154e0a853e031f172e220/bin/python3.8 build.py -j64 --compiler clang --type MinSizeRel --python-include-dir=/home/benchmark/prefix/nobu-5/ubuntu/python-3.8.gcc/c366c4308e4154e0a853e031f172e220/include/python3.8 --python-lib=/home/benchmark/prefix/nobu-5/ubuntu/python-3.8.gcc/c366c4308e4154e0a853e031f172e220/lib --multi-threaded --serialization Building PyRosetta MinSizeRel... Command line: cd /home/benchmark/rosetta/source/src/python/PyRosetta && /home/benchmark/prefix/nobu-5/ubuntu/python-3.8.gcc/c366c4308e4154e0a853e031f172e220/bin/python3.8 build.py -j64 --compiler clang --type MinSizeRel --python-include-dir=/home/benchmark/prefix/nobu-5/ubuntu/python-3.8.gcc/c366c4308e4154e0a853e031f172e220/include/python3.8 --python-lib=/home/benchmark/prefix/nobu-5/ubuntu/python-3.8.gcc/c366c4308e4154e0a853e031f172e220/lib --multi-threaded --serialization Creating PyRosetta in "MinSizeRel" mode in: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread Getting main repository root... cd /home/benchmark/rosetta/source && git rev-parse --show-toplevel /home/benchmark/rosetta Updating Pybind11 Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/external/pybind11 Updating Binder Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/src/python/PyRosetta/binder LLVM build detected, but config/binder version has changed, perfoming a clean rebuild... Download LLVM source... cd /home/benchmark/rosetta/source/build/prefix && mkdir llvm-6.0.1.src && curl -LJ https://releases.llvm.org/6.0.1/llvm-6.0.1.src.tar.xz | tar --strip-components=1 -Jxom -C llvm-6.0.1.src && mv llvm-6.0.1.src /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 47 24.1M 47 11.5M 0 0 8749k 0 0:00:02 0:00:01 0:00:01 8742k 84 24.1M 84 20.4M 0 0 8943k 0 0:00:02 0:00:02 --:--:-- 8940k 100 24.1M 100 24.1M 0 0 7749k 0 0:00:03 0:00:03 --:--:-- 7752k Download Clang source... cd /home/benchmark/rosetta/source/build/prefix && mkdir clang-6.0.1.src && curl -LJ https://releases.llvm.org/6.0.1/cfe-6.0.1.src.tar.xz | tar --strip-components=1 -Jxom -C clang-6.0.1.src && mv clang-6.0.1.src /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/tools/clang % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 11.3M 0 49152 0 0 941k 0 0:00:12 --:--:-- 0:00:12 923k 90 11.3M 90 10.2M 0 0 9611k 0 0:00:01 0:00:01 --:--:-- 9602k 100 11.3M 100 11.3M 0 0 9406k 0 0:00:01 0:00:01 --:--:-- 9406k Building tool: binder... cd /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-glibc2.27.release && cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER=`which clang` -DCMAKE_CXX_COMPILER=`which clang++` -DLLVM_ENABLE_EH=1 -DLLVM_ENABLE_RTTI=ON .. && ninja binder tools/clang/lib/Headers/clang-headers -j64 Updating compilation submodules, version, options and residue-type-enum files... cd /home/benchmark/rosetta/source && ./update_submodules.sh PyRosetta bcl zeromq && ./version.py && ./update_options.sh && ./update_ResidueType_enum_files.sh ...truncated... import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T870_SubClassing_EnergyMethods2 in 0:00:00.058590 Traceback (most recent call last): File "test/T300_PyJobDistributor.py", line 14, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T300_PyJobDistributor in 0:00:00.062897 Traceback (most recent call last): File "test/T850_SubClassing.py", line 16, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T850_SubClassing in 0:00:00.060910 Traceback (most recent call last): File "test/T700_FoldTree.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T700_FoldTree in 0:00:00.061257 Traceback (most recent call last): File "test/Workshop9_my_shapes.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop9_my_shapes in 0:00:00.057025 Traceback (most recent call last): File "test/Workshop5test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop5test in 0:00:00.057622 Traceback (most recent call last): File "test/Workshop8test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop8test in 0:00:00.060634 Traceback (most recent call last): File "test/T600_Docking.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T600_Docking in 0:00:00.065823 T900_distributed - passed Following PyRosetta Tests FAILED: C001_Carbohydrates_Demo01 - FAILED D010_Pose_structure - FAILED D020_Pose_scoring - FAILED D030_Fold_tree - FAILED D040_Movemap - FAILED D050_Packer_task - FAILED D060_Folding - FAILED D070_Refinement - FAILED D080_Loop_modeling - FAILED D090_Ala_scan - FAILED D100_Docking - FAILED D110_DNA_interface - FAILED D120_Ligand_interface - FAILED T000_Imports - FAILED T005_Bindings - FAILED T006_Options - FAILED T007_TracerIO - FAILED T008_Serialization - FAILED T009_Exceptions - FAILED T010_LoadPDB - FAILED T020_Pose_Bindings - FAILED T040_Types - FAILED T100_basic - FAILED T110_numeric - FAILED T120_core.RotamerSets - FAILED T121_core.ResidueSelector - FAILED T150_PyMOL_Integration - FAILED T150_core.misc.lkball - FAILED T190_Bindings_Utility - FAILED T200_Scoring - FAILED T201_Scoring_pre_talaris - FAILED T220_AtomAtomPairEnergies - FAILED T250_Constraints - FAILED T300_PyJobDistributor - FAILED T400_Refinement - FAILED T500_Packing - FAILED T600_Docking - FAILED T650_LoopsKIC - FAILED T660_LoopBuilding - FAILED T700_FoldTree - FAILED T800_ClassicRelax - FAILED T850_SubClassing - FAILED T860_SubClassing_EnergyMethods - FAILED T870_SubClassing_EnergyMethods2 - FAILED T880_Other - FAILED Workshop2test - FAILED Workshop3test - FAILED Workshop4test - FAILED Workshop5test - FAILED Workshop6test - FAILED Workshop7test - FAILED Workshop8test - FAILED Workshop9_my_shapes - FAILED Workshop9test - FAILED
Traceback (most recent call last): File "test/C001_Carbohydrates_Demo01.py", line 7, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished C001_Carbohydrates_Demo01 in 0:00:00.060240
Traceback (most recent call last): File "demo/D010_Pose_structure.py", line 57, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D010_Pose_structure in 0:00:00.054927
Traceback (most recent call last): File "demo/D020_Pose_scoring.py", line 66, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D020_Pose_scoring in 0:00:00.063848
Traceback (most recent call last): File "demo/D030_Fold_tree.py", line 65, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D030_Fold_tree in 0:00:00.066520
Traceback (most recent call last): File "demo/D040_Movemap.py", line 64, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D040_Movemap in 0:00:00.067560
Traceback (most recent call last): File "demo/D050_Packer_task.py", line 69, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D050_Packer_task in 0:00:00.064744
Traceback (most recent call last): File "demo/D060_Folding.py", line 95, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D060_Folding in 0:00:00.062728
Traceback (most recent call last): File "demo/D070_Refinement.py", line 89, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D070_Refinement in 0:00:00.066658
Traceback (most recent call last): File "demo/D080_Loop_modeling.py", line 122, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D080_Loop_modeling in 0:00:00.066590
demo/D090_Ala_scan.py:84: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'. from rosetta.protocols.scoring import Interface Traceback (most recent call last): File "demo/D090_Ala_scan.py", line 84, in <module> from rosetta.protocols.scoring import Interface File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/rosetta/__init__.py", line 21, in <module> import pyrosetta.rosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D090_Ala_scan in 0:00:00.067358
Traceback (most recent call last): File "demo/D100_Docking.py", line 90, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D100_Docking in 0:00:00.060283
Traceback (most recent call last): File "demo/D110_DNA_interface.py", line 73, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D110_DNA_interface in 0:00:00.066648
Traceback (most recent call last): File "demo/D120_Ligand_interface.py", line 79, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished D120_Ligand_interface in 0:00:00.064913
Traceback (most recent call last): File "test/T000_Imports.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T000_Imports in 0:00:00.060324
Traceback (most recent call last): File "test/T005_Bindings.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T005_Bindings in 0:00:00.060054
Traceback (most recent call last): File "test/T006_Options.py", line 3, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T006_Options in 0:00:00.060365
-------- Test/Demo for capturing Tracers output in PyRosetta -------- test/T007_TracerIO.py:14: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'. import rosetta, pyrosetta Traceback (most recent call last): File "test/T007_TracerIO.py", line 14, in <module> import rosetta, pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/rosetta/__init__.py", line 21, in <module> import pyrosetta.rosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T007_TracerIO in 0:00:00.064557
Traceback (most recent call last): File "test/T008_Serialization.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T008_Serialization in 0:00:00.057786
Traceback (most recent call last): File "test/T009_Exceptions.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T009_Exceptions in 0:00:00.058679
Traceback (most recent call last): File "test/T010_LoadPDB.py", line 18, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T010_LoadPDB in 0:00:00.058537
Traceback (most recent call last): File "test/T020_Pose_Bindings.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T020_Pose_Bindings in 0:00:00.057598
Traceback (most recent call last): File "test/T040_Types.py", line 17, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T040_Types in 0:00:00.065537
Traceback (most recent call last): File "test/T100_basic.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T100_basic in 0:00:00.060460
Traceback (most recent call last): File "test/T110_numeric.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T110_numeric in 0:00:00.061317
Traceback (most recent call last): File "test/T120_core.RotamerSets.py", line 14, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T120_core.RotamerSets in 0:00:00.058188
Traceback (most recent call last): File "test/T121_core.ResidueSelector.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T121_core.ResidueSelector in 0:00:00.052974
Traceback (most recent call last): File "test/T150_PyMOL_Integration.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T150_PyMOL_Integration in 0:00:00.058446
Traceback (most recent call last): File "test/T150_core.misc.lkball.py", line 17, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T150_core.misc.lkball in 0:00:00.057312
Traceback (most recent call last): File "test/T190_Bindings_Utility.py", line 10, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T190_Bindings_Utility in 0:00:00.055686
Traceback (most recent call last): File "test/T200_Scoring.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T200_Scoring in 0:00:00.053804
Traceback (most recent call last): File "test/T201_Scoring_pre_talaris.py", line 17, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T201_Scoring_pre_talaris in 0:00:00.056838
Traceback (most recent call last): File "test/T220_AtomAtomPairEnergies.py", line 5, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T220_AtomAtomPairEnergies in 0:00:00.054932
Traceback (most recent call last): File "test/T250_Constraints.py", line 3, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T250_Constraints in 0:00:00.054359
Traceback (most recent call last): File "test/T300_PyJobDistributor.py", line 14, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T300_PyJobDistributor in 0:00:00.062897
Traceback (most recent call last): File "test/T400_Refinement.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T400_Refinement in 0:00:00.057049
Traceback (most recent call last): File "test/T500_Packing.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T500_Packing in 0:00:00.057522
Traceback (most recent call last): File "test/T600_Docking.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T600_Docking in 0:00:00.065823
Traceback (most recent call last): File "test/T650_LoopsKIC.py", line 11, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T650_LoopsKIC in 0:00:00.056600
Traceback (most recent call last): File "test/T660_LoopBuilding.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T660_LoopBuilding in 0:00:00.055011
Traceback (most recent call last): File "test/T700_FoldTree.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T700_FoldTree in 0:00:00.061257
Traceback (most recent call last): File "test/T800_ClassicRelax.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T800_ClassicRelax in 0:00:00.053944
Traceback (most recent call last): File "test/T850_SubClassing.py", line 16, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T850_SubClassing in 0:00:00.060910
Traceback (most recent call last): File "test/T860_SubClassing_EnergyMethods.py", line 16, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T860_SubClassing_EnergyMethods in 0:00:00.052188
Traceback (most recent call last): File "test/T870_SubClassing_EnergyMethods2.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T870_SubClassing_EnergyMethods2 in 0:00:00.058590
Traceback (most recent call last): File "test/T880_Other.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished T880_Other in 0:00:00.058009
Traceback (most recent call last): File "test/Workshop2test.py", line 9, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop2test in 0:00:00.052591
Traceback (most recent call last): File "test/Workshop3test.py", line 8, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop3test in 0:00:00.052515
Traceback (most recent call last): File "test/Workshop4test.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop4test in 0:00:00.054963
Traceback (most recent call last): File "test/Workshop5test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop5test in 0:00:00.057622
Traceback (most recent call last): File "test/Workshop6test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop6test in 0:00:00.051874
Traceback (most recent call last): File "test/Workshop7test.py", line 8, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop7test in 0:00:00.053742
Traceback (most recent call last): File "test/Workshop8test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop8test in 0:00:00.060634
Traceback (most recent call last): File "test/Workshop9_my_shapes.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop9_my_shapes in 0:00:00.057025
Traceback (most recent call last): File "test/Workshop9test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE Finished Workshop9test in 0:00:00.050199
Unsupported python version for pyrosetta.distributed: sys.version_info(major=3, minor=8, micro=14, releaselevel='final', serial=0) Finished T900_distributed in 0:00:00.024754
{ "tests": { "C001_Carbohydrates_Demo01": { "log": "Traceback (most recent call last):\n File \"test/C001_Carbohydrates_Demo01.py\", line 7, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished C001_Carbohydrates_Demo01 in 0:00:00.060240", "state": "failed" }, "D010_Pose_structure": { "log": "Traceback (most recent call last):\n File \"demo/D010_Pose_structure.py\", line 57, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D010_Pose_structure in 0:00:00.054927", "state": "failed" }, "D020_Pose_scoring": { "log": "Traceback (most recent call last):\n File \"demo/D020_Pose_scoring.py\", line 66, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D020_Pose_scoring in 0:00:00.063848", "state": "failed" }, "D030_Fold_tree": { "log": "Traceback (most recent call last):\n File \"demo/D030_Fold_tree.py\", line 65, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D030_Fold_tree in 0:00:00.066520", "state": "failed" }, "D040_Movemap": { "log": "Traceback (most recent call last):\n File \"demo/D040_Movemap.py\", line 64, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D040_Movemap in 0:00:00.067560", "state": "failed" }, "D050_Packer_task": { "log": "Traceback (most recent call last):\n File \"demo/D050_Packer_task.py\", line 69, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D050_Packer_task in 0:00:00.064744", "state": "failed" }, "D060_Folding": { "log": "Traceback (most recent call last):\n File \"demo/D060_Folding.py\", line 95, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D060_Folding in 0:00:00.062728", "state": "failed" }, "D070_Refinement": { "log": "Traceback (most recent call last):\n File \"demo/D070_Refinement.py\", line 89, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D070_Refinement in 0:00:00.066658", "state": "failed" }, "D080_Loop_modeling": { "log": "Traceback (most recent call last):\n File \"demo/D080_Loop_modeling.py\", line 122, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D080_Loop_modeling in 0:00:00.066590", "state": "failed" }, "D090_Ala_scan": { "log": "demo/D090_Ala_scan.py:84: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n from rosetta.protocols.scoring import Interface\nTraceback (most recent call last):\n File \"demo/D090_Ala_scan.py\", line 84, in <module>\n from rosetta.protocols.scoring import Interface\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/rosetta/__init__.py\", line 21, in <module>\n import pyrosetta.rosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D090_Ala_scan in 0:00:00.067358", "state": "failed" }, "D100_Docking": { "log": "Traceback (most recent call last):\n File \"demo/D100_Docking.py\", line 90, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D100_Docking in 0:00:00.060283", "state": "failed" }, "D110_DNA_interface": { "log": "Traceback (most recent call last):\n File \"demo/D110_DNA_interface.py\", line 73, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D110_DNA_interface in 0:00:00.066648", "state": "failed" }, "D120_Ligand_interface": { "log": "Traceback (most recent call last):\n File \"demo/D120_Ligand_interface.py\", line 79, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished D120_Ligand_interface in 0:00:00.064913", "state": "failed" }, "T000_Imports": { "log": "Traceback (most recent call last):\n File \"test/T000_Imports.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T000_Imports in 0:00:00.060324", "state": "failed" }, "T005_Bindings": { "log": "Traceback (most recent call last):\n File \"test/T005_Bindings.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T005_Bindings in 0:00:00.060054", "state": "failed" }, "T006_Options": { "log": "Traceback (most recent call last):\n File \"test/T006_Options.py\", line 3, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T006_Options in 0:00:00.060365", "state": "failed" }, "T007_TracerIO": { "log": "-------- Test/Demo for capturing Tracers output in PyRosetta --------\ntest/T007_TracerIO.py:14: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n import rosetta, pyrosetta\nTraceback (most recent call last):\n File \"test/T007_TracerIO.py\", line 14, in <module>\n import rosetta, pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/rosetta/__init__.py\", line 21, in <module>\n import pyrosetta.rosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T007_TracerIO in 0:00:00.064557", "state": "failed" }, "T008_Serialization": { "log": "Traceback (most recent call last):\n File \"test/T008_Serialization.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T008_Serialization in 0:00:00.057786", "state": "failed" }, "T009_Exceptions": { "log": "Traceback (most recent call last):\n File \"test/T009_Exceptions.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T009_Exceptions in 0:00:00.058679", "state": "failed" }, "T010_LoadPDB": { "log": "Traceback (most recent call last):\n File \"test/T010_LoadPDB.py\", line 18, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T010_LoadPDB in 0:00:00.058537", "state": "failed" }, "T020_Pose_Bindings": { "log": "Traceback (most recent call last):\n File \"test/T020_Pose_Bindings.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T020_Pose_Bindings in 0:00:00.057598", "state": "failed" }, "T040_Types": { "log": "Traceback (most recent call last):\n File \"test/T040_Types.py\", line 17, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T040_Types in 0:00:00.065537", "state": "failed" }, "T100_basic": { "log": "Traceback (most recent call last):\n File \"test/T100_basic.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T100_basic in 0:00:00.060460", "state": "failed" }, "T110_numeric": { "log": "Traceback (most recent call last):\n File \"test/T110_numeric.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T110_numeric in 0:00:00.061317", "state": "failed" }, "T120_core.RotamerSets": { "log": "Traceback (most recent call last):\n File \"test/T120_core.RotamerSets.py\", line 14, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T120_core.RotamerSets in 0:00:00.058188", "state": "failed" }, "T121_core.ResidueSelector": { "log": "Traceback (most recent call last):\n File \"test/T121_core.ResidueSelector.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T121_core.ResidueSelector in 0:00:00.052974", "state": "failed" }, "T150_PyMOL_Integration": { "log": "Traceback (most recent call last):\n File \"test/T150_PyMOL_Integration.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T150_PyMOL_Integration in 0:00:00.058446", "state": "failed" }, "T150_core.misc.lkball": { "log": "Traceback (most recent call last):\n File \"test/T150_core.misc.lkball.py\", line 17, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T150_core.misc.lkball in 0:00:00.057312", "state": "failed" }, "T190_Bindings_Utility": { "log": "Traceback (most recent call last):\n File \"test/T190_Bindings_Utility.py\", line 10, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T190_Bindings_Utility in 0:00:00.055686", "state": "failed" }, "T200_Scoring": { "log": "Traceback (most recent call last):\n File \"test/T200_Scoring.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T200_Scoring in 0:00:00.053804", "state": "failed" }, "T201_Scoring_pre_talaris": { "log": "Traceback (most recent call last):\n File \"test/T201_Scoring_pre_talaris.py\", line 17, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T201_Scoring_pre_talaris in 0:00:00.056838", "state": "failed" }, "T220_AtomAtomPairEnergies": { "log": "Traceback (most recent call last):\n File \"test/T220_AtomAtomPairEnergies.py\", line 5, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T220_AtomAtomPairEnergies in 0:00:00.054932", "state": "failed" }, "T250_Constraints": { "log": "Traceback (most recent call last):\n File \"test/T250_Constraints.py\", line 3, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T250_Constraints in 0:00:00.054359", "state": "failed" }, "T300_PyJobDistributor": { "log": "Traceback (most recent call last):\n File \"test/T300_PyJobDistributor.py\", line 14, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T300_PyJobDistributor in 0:00:00.062897", "state": "failed" }, "T400_Refinement": { "log": "Traceback (most recent call last):\n File \"test/T400_Refinement.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T400_Refinement in 0:00:00.057049", "state": "failed" }, "T500_Packing": { "log": "Traceback (most recent call last):\n File \"test/T500_Packing.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T500_Packing in 0:00:00.057522", "state": "failed" }, "T600_Docking": { "log": "Traceback (most recent call last):\n File \"test/T600_Docking.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T600_Docking in 0:00:00.065823", "state": "failed" }, "T650_LoopsKIC": { "log": "Traceback (most recent call last):\n File \"test/T650_LoopsKIC.py\", line 11, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T650_LoopsKIC in 0:00:00.056600", "state": "failed" }, "T660_LoopBuilding": { "log": "Traceback (most recent call last):\n File \"test/T660_LoopBuilding.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T660_LoopBuilding in 0:00:00.055011", "state": "failed" }, "T700_FoldTree": { "log": "Traceback (most recent call last):\n File \"test/T700_FoldTree.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T700_FoldTree in 0:00:00.061257", "state": "failed" }, "T800_ClassicRelax": { "log": "Traceback (most recent call last):\n File \"test/T800_ClassicRelax.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T800_ClassicRelax in 0:00:00.053944", "state": "failed" }, "T850_SubClassing": { "log": "Traceback (most recent call last):\n File \"test/T850_SubClassing.py\", line 16, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T850_SubClassing in 0:00:00.060910", "state": "failed" }, "T860_SubClassing_EnergyMethods": { "log": "Traceback (most recent call last):\n File \"test/T860_SubClassing_EnergyMethods.py\", line 16, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T860_SubClassing_EnergyMethods in 0:00:00.052188", "state": "failed" }, "T870_SubClassing_EnergyMethods2": { "log": "Traceback (most recent call last):\n File \"test/T870_SubClassing_EnergyMethods2.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T870_SubClassing_EnergyMethods2 in 0:00:00.058590", "state": "failed" }, "T880_Other": { "log": "Traceback (most recent call last):\n File \"test/T880_Other.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished T880_Other in 0:00:00.058009", "state": "failed" }, "T900_distributed": { "log": "Unsupported python version for pyrosetta.distributed: sys.version_info(major=3, minor=8, micro=14, releaselevel='final', serial=0)\n\nFinished T900_distributed in 0:00:00.024754", "state": "passed" }, "Workshop2test": { "log": "Traceback (most recent call last):\n File \"test/Workshop2test.py\", line 9, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop2test in 0:00:00.052591", "state": "failed" }, "Workshop3test": { "log": "Traceback (most recent call last):\n File \"test/Workshop3test.py\", line 8, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop3test in 0:00:00.052515", "state": "failed" }, "Workshop4test": { "log": "Traceback (most recent call last):\n File \"test/Workshop4test.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop4test in 0:00:00.054963", "state": "failed" }, "Workshop5test": { "log": "Traceback (most recent call last):\n File \"test/Workshop5test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop5test in 0:00:00.057622", "state": "failed" }, "Workshop6test": { "log": "Traceback (most recent call last):\n File \"test/Workshop6test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop6test in 0:00:00.051874", "state": "failed" }, "Workshop7test": { "log": "Traceback (most recent call last):\n File \"test/Workshop7test.py\", line 8, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop7test in 0:00:00.053742", "state": "failed" }, "Workshop8test": { "log": "Traceback (most recent call last):\n File \"test/Workshop8test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop8test in 0:00:00.060634", "state": "failed" }, "Workshop9_my_shapes": { "log": "Traceback (most recent call last):\n File \"test/Workshop9_my_shapes.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop9_my_shapes in 0:00:00.057025", "state": "failed" }, "Workshop9test": { "log": "Traceback (most recent call last):\n File \"test/Workshop9test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.27/clang-6.0.0/python-3.8/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZN5devel4initERKN7utility7vector1INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEE\n\nFinished Workshop9test in 0:00:00.050199", "state": "failed" } } }